Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 1.0e-88 330.1 174 100.0
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.2e-75 285.8 174 88.5
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.9e-74 282.7 174 87.4
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 4.2e-74 281.6 174 87.4
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 1.4e-69 266.5 174 83.9
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 5.3e-69 264.6 174 81.0
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 5.3e-61 238.0 148 85.1
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.7e-54 216.5 174 68.4
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 4.8e-54 214.9 173 67.6
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 2.2e-51 206.1 174 62.6
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 2.5e-50 202.6 174 62.1
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 4.2e-50 201.8 174 62.6
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 2.7e-49 199.1 174 63.2
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 2.7e-49 199.1 174 59.8
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 2.7e-49 199.1 174 60.9
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 8.8e-48 194.1 175 59.4
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 2.0e-47 193.0 108 93.5
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 3.3e-47 192.2 174 58.6
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 4.4e-47 191.8 174 57.5
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.1e-45 187.2 176 58.0
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 1.4e-45 186.8 174 56.3
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 1.8e-45 186.4 174 56.3
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 4.1e-45 185.3 174 56.9
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 5.3e-45 184.9 175 57.7
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 2.0e-44 183.0 175 58.3
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 3.5e-44 182.2 176 57.4
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 3.5e-44 182.2 174 56.9
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 7.7e-44 181.0 176 56.8
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 2.2e-43 179.5 174 55.2
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 2.9e-43 179.1 184 55.4
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 1.9e-42 176.4 164 57.9
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 1.9e-42 176.4 171 56.1
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 2.5e-42 176.0 174 53.4
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 1.6e-41 173.3 174 56.9
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 2.7e-41 172.6 172 54.7
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 6.1e-41 171.4 172 53.5
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 3.0e-40 169.1 179 50.3
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 8.8e-40 167.5 171 52.6
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 1.2e-39 167.2 176 52.3
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 1.2e-39 167.2 172 52.3
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 3.3e-39 165.6 164 53.7
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 4.4e-39 165.2 164 53.7
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 7.5e-39 164.5 171 52.0
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 7.5e-39 164.5 174 57.5
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 7.5e-39 164.5 172 51.7
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 7.5e-39 164.5 171 52.6
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 9.7e-39 164.1 176 52.3
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 2.8e-38 162.5 176 50.6
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 5.3e-37 158.3 172 49.4
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 5.3e-37 158.3 175 53.1
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 7.0e-37 157.9 171 51.5
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 1.6e-36 156.8 174 50.0
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 4.5e-36 155.2 125 65.6
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 4.5e-36 155.2 174 48.3
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 4.5e-36 155.2 174 48.3
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 7.7e-36 154.5 144 57.6
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 5.5e-34 148.3 171 46.2
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 7.2e-34 147.9 176 47.7
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 2.1e-33 146.4 174 48.9
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 2.7e-33 146.0 171 46.8
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.4e-32 143.7 173 49.1
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 1.8e-32 143.3 173 47.4
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 4.0e-32 142.1 174 45.4
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 5.2e-32 141.7 173 49.1
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 5.2e-32 141.7 173 49.1
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 2.0e-31 139.8 174 44.3
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 2.0e-31 139.8 90 80.0
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 3.4e-31 139.0 136 55.9
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 4.4e-31 138.7 174 44.3
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 4.4e-31 138.7 174 44.3
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 4.4e-31 138.7 174 44.3
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 7.5e-31 137.9 174 44.3
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 7.5e-31 137.9 182 44.0
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.7e-30 136.7 178 46.1
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 2.2e-30 136.3 180 45.0
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 2.8e-30 136.0 176 44.3
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 2.8e-30 136.0 176 44.3
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 3.7e-30 135.6 174 44.3
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 3.7e-30 135.6 172 44.8
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 8.3e-30 134.4 174 44.3
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 8.3e-30 134.4 217 38.2
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 1.4e-29 133.7 174 44.3
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 7.0e-29 131.3 174 43.1
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 7.0e-29 131.3 173 45.7
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 2.0e-28 129.8 182 41.2
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 2.7e-28 129.4 182 41.2
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 4.5e-28 128.6 182 43.4
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 7.7e-28 127.9 181 42.0
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 7.7e-28 127.9 182 45.1
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 1.0e-27 127.5 179 43.6
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 1.3e-27 127.1 147 51.7
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.9e-26 123.2 122 53.3
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 9.5e-26 120.9 180 41.1
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 1.2e-25 120.6 172 44.2
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 1.6e-25 120.2 182 43.4
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 2.8e-25 119.4 114 52.6
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 1.4e-24 117.1 203 37.9
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 6.8e-24 114.8 170 41.8
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 4.9e-22 108.6 113 50.4
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 6.3e-22 108.2 128 46.9
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 8.3e-22 107.8 173 35.8
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 1.1e-21 107.5 161 42.2
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 1.7e-19 100.1 174 38.5
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 2.3e-19 99.8 111 50.5
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 2.9e-19 99.4 165 39.4
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 1.5e-18 97.1 112 46.4
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 4.3e-18 95.5 145 40.0
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 5.6e-18 95.1 174 33.9
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 6.1e-17 91.7 158 34.8
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 2.6e-15 86.3 168 31.5
CiPaw.05G217800 Carya illinoinensis HOM05D006478 ORTHO05D008071 3.4e-15 85.9 73 58.9
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 7.0e-13 78.2 78 55.1
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 2.3e-11 73.2 174 30.5
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 5.6e-10 68.6 144 34.7
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 1.6e-09 67.0 193 29.5
Medtr1g069420 Medicago truncatula HOM05D002356 ORTHO05D002546 8.0e-09 64.7 89 39.3
Nitab4.5_0001780g0030 Nicotiana tabacum HOM05D006478 ORTHO05D008071 5.2e-08 62.0 64 46.9
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 2.6e-07 59.7 45 62.2
HPP92_020994 Vanilla planifolia HOM05D006478 ORTHO05D008071 2.2e-06 56.6 102 35.3
Actinidia03077 Actinidia chinensis HOM05D006478 ORTHO05D008071 6.4e-06 55.1 175 30.9


User provided reference genes

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