Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 1.1e-53 213.0 104 100.0
RcHm_v2.0_Chr1g0381071 Rosa chinensis HOM05D003461 ORTHO05D004386 7.1e-45 183.7 104 89.4
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 1.1e-21 106.7 57 91.2
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 1.1e-21 106.7 57 91.2
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 1.4e-21 106.3 57 89.5
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 87.7
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 4.2e-21 104.8 57 89.5
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 87.7
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 87.7
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 87.7
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 87.7
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 89.5
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 89.5
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 89.5
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 5.5e-21 104.4 57 89.5
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 7.2e-21 104.0 57 87.7
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 9.3e-21 103.6 57 87.7
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 1.2e-20 103.2 57 87.7
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 1.6e-20 102.8 57 87.7
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 1.6e-20 102.8 57 87.7
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 1.6e-20 102.8 57 87.7
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 2.1e-20 102.4 57 87.7
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 2.1e-20 102.4 57 84.2
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 87.7
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 2.7e-20 102.1 57 86.0
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 3.5e-20 101.7 57 86.0
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 3.5e-20 101.7 57 86.0
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 3.5e-20 101.7 57 84.2
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 4.6e-20 101.3 57 86.0
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 4.6e-20 101.3 57 86.0
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 4.6e-20 101.3 57 84.2
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 6.1e-20 100.9 57 84.2
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 6.1e-20 100.9 57 86.0
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 6.1e-20 100.9 57 86.0
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 6.1e-20 100.9 57 86.0
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 7.9e-20 100.5 57 87.7
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 1.0e-19 100.1 57 82.5
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 1.3e-19 99.8 57 84.2
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 1.8e-19 99.4 57 84.2
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 3.9e-19 98.2 57 82.5
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 3.9e-19 98.2 57 80.7
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 8.7e-19 97.1 57 82.5
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 8.7e-19 97.1 57 82.5
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 1.1e-18 96.7 57 80.7
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 1.1e-18 96.7 57 80.7
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 1.9e-18 95.9 57 78.9
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 2.5e-18 95.5 57 77.2
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 3.3e-18 95.1 57 80.7
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 5.7e-18 94.4 57 77.2
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 7.4e-18 94.0 57 77.2
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 7.4e-18 94.0 57 77.2
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 3.7e-17 91.7 57 78.9
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 4.8e-17 91.3 57 75.4
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 6.3e-17 90.9 62 71.0
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 1.1e-16 90.1 57 75.4
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 1.1e-16 90.1 57 75.4
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 1.8e-16 89.4 57 78.9
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 2.4e-16 89.0 57 78.9
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 1.2e-15 86.7 57 75.4
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 1.5e-15 86.3 61 72.1
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 2.0e-15 85.9 57 73.7
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 2.6e-15 85.5 57 66.7
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 5.9e-15 84.3 57 73.7
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 1.3e-14 83.2 57 73.7
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 3.8e-14 81.6 57 70.2
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 8.5e-14 80.5 57 66.7
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 8.5e-14 80.5 57 64.9
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 1.9e-13 79.3 57 63.2
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 5.5e-13 77.8 57 68.4
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 9.4e-13 77.0 57 63.2
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 1.2e-12 76.6 57 63.2
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 6.1e-12 74.3 57 61.4
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 1.0e-11 73.6 57 64.9
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 5.3e-08 61.2 58 55.2
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 6.5e-06 54.3 57 45.6


User provided reference genes

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