Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0412841 Rosa chinensis HOM05D007741 ORTHO05D011461 3.3e-46 188.0 90 100.0
FvH4_5g00140 Fragaria vesca HOM05D007761 ORTHO05D015647 2.4e-20 102.1 92 63.0
RcHm_v2.0_Chr4g0422711 Rosa chinensis HOM05D007741 ORTHO05D011461 3.1e-20 101.7 87 59.8
RcHm_v2.0_Chr1g0330531 Rosa chinensis HOM05D007741 ORTHO05D011461 2.0e-19 99.0 96 58.3
RcHm_v2.0_Chr6g0280101 Rosa chinensis HOM05D007741 ORTHO05D343715 2.0e-19 99.0 96 58.3
FAN01G0683 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.4e-17 92.8 92 56.5
FAN10G3275 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.4e-17 92.8 92 56.5
FAN12G0192 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.4e-17 92.8 92 56.5
FAN25G1610 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.4e-17 92.8 92 56.5
RcHm_v2.0_Chr1g0351211 Rosa chinensis HOM05D007741 ORTHO05D015647 1.6e-16 89.4 86 58.1
FAN24G2207 Fragaria x ananassa HOM05D007761 ORTHO05D015647 6.0e-16 87.4 90 55.6
RcHm_v2.0_Chr6g0280951 Rosa chinensis HOM05D007761 ORTHO05D011461 4.3e-14 81.3 85 55.3
FAN04G2389 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.2e-13 79.7 79 53.2
FAN12G3955 Fragaria x ananassa HOM05D007761 ORTHO05D015647 8.1e-13 77.0 88 54.5
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.4e-12 76.3 80 56.2
RcHm_v2.0_Chr3g0465101 Rosa chinensis HOM05D007741 ORTHO05D342996 1.8e-12 75.9 95 47.4
FvH4_5g02251 Fragaria vesca HOM05D000005 ORTHO05D000294 5.3e-12 74.3 82 54.9
FAN14G3085 Fragaria x ananassa HOM05D007741 ORTHO05D201723 9.0e-12 73.6 96 41.7
FAN02G2687 Fragaria x ananassa HOM05D007741 ORTHO05D211123 1.2e-11 73.2 93 50.5
RcHm_v2.0_Chr1g0346381 Rosa chinensis HOM05D007741 ORTHO05D016318 4.4e-11 71.2 100 46.0
RcHm_v2.0_Chr2g0160901 Rosa chinensis HOM05D007741 ORTHO05D011461 5.8e-11 70.9 86 50.0
RcHm_v2.0_Chr4g0423141 Rosa chinensis HOM05D007741 ORTHO05D016318 7.6e-11 70.5 100 46.0
FAN09G1022 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.3e-10 69.7 70 51.4
FAN15G3031 Fragaria x ananassa HOM05D007741 ORTHO05D014215 2.2e-10 68.9 95 48.4
RcHm_v2.0_Chr2g0140171 Rosa chinensis HOM05D007741 ORTHO05D015647 1.4e-09 66.2 59 57.6
RcHm_v2.0_Chr7g0204801 Rosa chinensis HOM05D007741 ORTHO05D016318 1.4e-09 66.2 68 54.4
FAN09G0722 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.9e-09 65.9 70 48.6
RcHm_v2.0_Chr4g0424711 Rosa chinensis HOM05D007741 ORTHO05D006912 1.9e-09 65.9 86 50.0
FAN06G3290 Fragaria x ananassa HOM05D007741 ORTHO05D203466 4.2e-09 64.7 68 55.9
FAN05G5109 Fragaria x ananassa HOM05D007761 ORTHO05D011461 5.4e-09 64.3 76 50.0
FAN14G5656 Fragaria x ananassa HOM05D008445 ORTHO05D011083 9.3e-09 63.5 86 44.2
FAN23G2308 Fragaria x ananassa HOM05D007741 ORTHO05D014215 1.2e-08 63.2 66 51.5
FAN07G1261 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.6e-08 62.8 92 45.7
FAN14G1493 Fragaria x ananassa HOM05D001253 ORTHO05D001086 1.6e-08 62.8 70 51.4
FAN12G2273 Fragaria x ananassa HOM05D007741 ORTHO05D209008 3.5e-08 61.6 89 43.8
FAN19G0161 Fragaria x ananassa HOM05D007741 ORTHO05D204998 3.5e-08 61.6 84 42.9
RcHm_v2.0_Chr5g0050261 Rosa chinensis HOM05D007741 ORTHO05D014215 3.5e-08 61.6 92 41.3
FAN11G1101 Fragaria x ananassa HOM05D008445 ORTHO05D010376 7.8e-08 60.5 82 45.1
RcHm_v2.0_Chr7g0213041 Rosa chinensis HOM05D007741 ORTHO05D014215 1.0e-07 60.1 65 53.8
FAN09G4565 Fragaria x ananassa HOM05D007761 ORTHO05D015647 1.3e-07 59.7 77 48.1
RcHm_v2.0_Chr4g0427731 Rosa chinensis HOM05D007741 ORTHO05D006912 1.7e-07 59.3 86 43.0
FAN15G1618 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.3e-07 58.9 92 45.7
RcHm_v2.0_Chr1g0339901 Rosa chinensis HOM05D007741 ORTHO05D016318 2.3e-07 58.9 91 42.9
RcHm_v2.0_Chr2g0119361 Rosa chinensis HOM05D007741 ORTHO05D016318 2.3e-07 58.9 91 42.9
FAN08G3144 Fragaria x ananassa HOM05D007761 ORTHO05D011461 3.0e-07 58.5 96 45.8
FAN16G3080 Fragaria x ananassa HOM05D007761 ORTHO05D000537 3.0e-07 58.5 95 43.2
RcHm_v2.0_Chr4g0422751 Rosa chinensis HOM05D007741 ORTHO05D016318 3.9e-07 58.2 89 40.4
RcHm_v2.0_Chr7g0215471 Rosa chinensis HOM05D007741 ORTHO05D346134 5.1e-07 57.8 91 41.8
FAN22G0864 Fragaria x ananassa HOM05D007741 ORTHO05D014215 6.6e-07 57.4 99 41.4
FAN24G0486 Fragaria x ananassa HOM05D007761 ORTHO05D011461 6.6e-07 57.4 92 44.6
FAN27G1253 Fragaria x ananassa HOM05D007761 ORTHO05D011461 1.1e-06 56.6 92 43.5
FAN27G1171 Fragaria x ananassa HOM05D007761 ORTHO05D011083 1.9e-06 55.8 63 50.8
FAN06G3287 Fragaria x ananassa HOM05D007761 ORTHO05D011461 2.5e-06 55.5 57 57.9
FvH4_4g07610 Fragaria vesca HOM05D008445 ORTHO05D011083 3.3e-06 55.1 75 45.3
FAN12G3425 Fragaria x ananassa HOM05D008445 ORTHO05D011083 3.3e-06 55.1 85 45.9
FAN15G0259 Fragaria x ananassa HOM05D007741 ORTHO05D200480 3.3e-06 55.1 83 44.6
FAN04G2478 Fragaria x ananassa HOM05D007761 ORTHO05D011461 4.3e-06 54.7 63 50.8
RcHm_v2.0_Chr7g0201181 Rosa chinensis HOM05D007741 ORTHO05D014215 4.3e-06 54.7 65 49.2
FAN10G3035 Fragaria x ananassa HOM05D010166 ORTHO05D207531 5.6e-06 54.3 93 39.8
FAN17G1839 Fragaria x ananassa HOM05D010166 ORTHO05D204969 5.6e-06 54.3 93 39.8
RcHm_v2.0_Chr7g0204591 Rosa chinensis HOM05D007741 ORTHO05D016318 5.6e-06 54.3 86 40.7
RcHm_v2.0_Chr6g0295101 Rosa chinensis HOM05D007741 ORTHO05D035834 7.3e-06 53.9 91 39.6
FAN11G1680 Fragaria x ananassa HOM05D007741 ORTHO05D204100 9.6e-06 53.5 93 41.9


User provided reference genes

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