Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0411281 Rosa chinensis HOM05D007205 ORTHO05D009175 2.8e-88 328.6 162 100.0
RcHm_v2.0_Chr1g0324271 Rosa chinensis HOM05D007205 ORTHO05D009175 6.2e-80 300.8 162 92.6
RcHm_v2.0_Chr6g0278031 Rosa chinensis HOM05D007205 ORTHO05D009175 1.6e-56 223.0 128 87.5
FvH4_6g43900 Fragaria vesca HOM05D007205 ORTHO05D009175 2.4e-55 219.2 161 72.0
FAN02G3251 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.4e-55 219.2 160 73.1
FAN14G2816 Fragaria x ananassa HOM05D007205 ORTHO05D009175 2.4e-55 219.2 161 72.0
FAN09G0942 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.1e-52 210.3 160 71.2
MD09G1127600 Malus domestica HOM05D007205 ORTHO05D009175 8.2e-40 167.5 156 57.1
Prupe.3G223600 Prunus persica HOM05D007205 ORTHO05D009175 1.3e-37 160.2 152 56.6
FAN05G3426 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.1e-36 157.1 158 58.9
FAN05G5134 Fragaria x ananassa HOM05D007205 ORTHO05D009175 1.1e-36 157.1 158 58.9
Manes.12G078600 Manihot esculenta HOM05D007205 ORTHO05D009175 5.3e-31 138.3 151 50.3
Lj3g0018731 Lotus japonicus HOM05D007205 ORTHO05D009175 4.5e-30 135.2 151 49.7
RcHm_v2.0_Chr2g0160671 Rosa chinensis HOM05D007205 ORTHO05D009175 1.7e-29 133.3 86 81.4
Nn5g28818 Nelumbo nucifera HOM05D007205 ORTHO05D009175 2.9e-29 132.5 155 45.2
Thecc.02G165600 Theobroma cacao HOM05D007205 ORTHO05D009175 6.5e-29 131.3 155 45.2
Potri.013G152200 Populus trichocarpa HOM05D007205 ORTHO05D009175 1.5e-28 130.2 151 49.7
Haze_12995 Corylus avellana HOM05D007205 ORTHO05D009175 2.5e-28 129.4 148 48.6
Duzib132G1034 Durio zibethinus HOM05D007205 ORTHO05D009175 7.2e-28 127.9 154 46.8
Atru.chr6.3107 Acer truncatum HOM05D007205 ORTHO05D009175 9.4e-28 127.5 152 46.1
CANSAT64G0219 Cannabis sativa HOM05D007205 ORTHO05D009175 1.6e-27 126.7 151 49.0
Gohir.A03G162500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 2.1e-27 126.3 160 45.6
TAR626G1876 Trochodendron aralioides HOM05D007205 ORTHO05D009175 2.1e-27 126.3 153 45.8
Cfa014480 Carpinus fangiana HOM05D007205 ORTHO05D009175 8.0e-27 124.4 149 49.0
Gohir.D02G185500 Gossypium hirsutum HOM05D007205 ORTHO05D009175 1.0e-26 124.0 160 45.0
Ca_01558_v3 Cicer arietinum L. HOM05D007205 ORTHO05D009175 1.4e-26 123.6 152 42.8
Gorai.005G208100 Gossypium raimondii HOM05D007205 ORTHO05D009175 1.4e-26 123.6 160 45.0
Sabra13G0122300 Salix brachista HOM05D007205 ORTHO05D009175 1.4e-26 123.6 151 48.3
DCAR_019203 Daucus carota HOM05D007205 ORTHO05D009175 2.3e-26 122.9 156 42.3
COL.COLO4_13041 Corchorus olitorius HOM05D007205 ORTHO05D009175 4.0e-26 122.1 155 44.5
TPR.G18059 Trifolium pratense HOM05D007205 ORTHO05D009175 8.8e-26 120.9 154 42.9
TWI75G1301 Tripterygium wilfordii HOM05D007205 ORTHO05D009175 2.0e-25 119.8 149 47.7
arahy.Tifrunner.gnm1.ann1.G6KXX8 Arachis hypogaea HOM05D007205 ORTHO05D009175 3.3e-25 119.0 135 45.9
arahy.Tifrunner.gnm1.ann1.WFU09D Arachis hypogaea HOM05D007205 ORTHO05D009175 3.3e-25 119.0 135 45.9
Hma1.2p1_0712F.1_g207580 Hydrangea macrophylla HOM05D007205 ORTHO05D009175 4.4e-25 118.6 152 44.1
Lj8P120T45 Lonicera japonica HOM05D007205 ORTHO05D009175 4.4e-25 118.6 156 45.5
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 4.4e-25 118.6 156 45.5
Ciclev10018085m.g Citrus clementina HOM05D007205 ORTHO05D009175 9.7e-25 117.5 153 44.4
Psat5g266880 Pisum sativum HOM05D007205 ORTHO05D009175 9.7e-25 117.5 160 42.5
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 2.2e-24 116.3 154 44.2
Medtr2g089200 Medicago truncatula HOM05D007205 ORTHO05D009175 3.7e-24 115.5 155 42.6
Nitab4.5_0001134g0050 Nicotiana tabacum HOM05D007205 ORTHO05D009175 4.8e-24 115.2 154 47.4
Peaxi162Scf00007g00153 Petunia axillaris HOM05D007205 ORTHO05D009175 8.2e-24 114.4 155 42.6
Phvul.002G284500 Phaseolus vulgaris HOM05D007205 ORTHO05D009175 8.2e-24 114.4 149 43.0
Glyma.13G304100 Glycine max HOM05D007205 ORTHO05D009175 1.4e-23 113.6 149 43.6
Sed0009741 Sechium edule HOM05D007205 ORTHO05D009175 4.1e-23 112.1 150 44.0
ClCG02G001450 Citrullus lanatus HOM05D007205 ORTHO05D009175 5.3e-23 111.7 155 42.6
CAN.G86.36 Capsicum annuum HOM05D007205 ORTHO05D009175 7.0e-23 111.3 156 47.4
VMungo0251G0055 Vigna mungo HOM05D007205 ORTHO05D009175 7.0e-23 111.3 149 41.6
Oeu040642.1 Olea europaea HOM05D007205 ORTHO05D009175 1.6e-22 110.2 155 43.2
Solyc07g053000.1 Solanum lycopersicum HOM05D007205 ORTHO05D009175 2.2e-21 106.3 156 42.3
THA.LOC104826759 Tarenaya hassleriana HOM05D007205 ORTHO05D009175 2.2e-21 106.3 152 39.5
Cpa.g.sc34.48 Carica papaya HOM05D007205 ORTHO05D009175 5.0e-21 105.1 152 42.8
MELO3C018783.2 Cucumis melo HOM05D007205 ORTHO05D009175 1.1e-20 104.0 156 37.8
Sopen07g026550 Solanum pennellii HOM05D007205 ORTHO05D009175 1.1e-20 104.0 158 43.0
PGSC0003DMG400040434 Solanum tuberosum HOM05D007205 ORTHO05D009175 1.9e-20 103.2 156 41.7
ECA233G0199 Erigeron canadensis HOM05D007205 ORTHO05D009175 5.5e-20 101.7 145 40.7
Sc12g0002500 Simmondsia chinensis HOM05D007205 ORTHO05D009175 5.5e-20 101.7 155 40.0
CsaV3_7G003940 Cucumis sativus L. HOM05D007205 ORTHO05D009175 7.2e-20 101.3 156 36.5
Rhsim06G0154800 Rhododendron simsii HOM05D007205 ORTHO05D009175 1.2e-19 100.5 154 39.0
BcaB01g02893 Brassica carinata HOM05D007205 ORTHO05D009175 2.1e-19 99.8 161 35.4
Lalb_Chr24g0393611 Lupinus albus HOM05D007205 ORTHO05D009175 2.7e-19 99.4 150 39.3
A03p03030 Brassica napus HOM05D007205 ORTHO05D009175 4.7e-19 98.6 160 37.5
SalBow2G2732 Salvia bowleyana HOM05D007205 ORTHO05D009175 8.0e-19 97.8 147 42.9
Eucgr.A01741 Eucalyptus grandis HOM05D007205 ORTHO05D009175 1.0e-18 97.4 136 41.2
BraA03t09662Z Brassica rapa HOM05D007205 ORTHO05D009175 5.2e-18 95.1 154 37.7
Lsat_1_v5_gn_3_42520 Lactuca sativa HOM05D007205 ORTHO05D009175 5.2e-18 95.1 155 36.8
MBI18_g38398_MAGBIO Magnolia biondii HOM05D007205 ORTHO05D009175 1.5e-17 93.6 150 34.0
BcaC02g10449 Brassica carinata HOM05D007205 ORTHO05D009175 2.0e-17 93.2 145 38.6
HanXRQChr17g0564241 Helianthus annuus HOM05D007205 ORTHO05D009175 2.0e-17 93.2 154 39.0
C04p28790 Brassica napus HOM05D007205 ORTHO05D009175 3.4e-17 92.4 145 38.6
SGA_v2.0_scaffold10G05347 Striga asiatica HOM05D007205 ORTHO05D009175 5.7e-17 91.7 152 38.2
Aa31sc1365G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 7.5e-17 91.3 154 35.1
CARHR206230 Cardamine hirsuta HOM05D007205 ORTHO05D009175 9.8e-17 90.9 159 33.3
Carub.0006s0584 Capsella rubella HOM05D007205 ORTHO05D009175 1.3e-16 90.5 167 35.9
Carub.0130s0001 Capsella rubella HOM05D007205 ORTHO05D009175 1.3e-16 90.5 167 35.9
Thhalv10015696m.g Eutrema salsugineum HOM05D007205 ORTHO05D009175 1.7e-16 90.1 158 36.1
AT5G06920 Arabidopsis thaliana HOM05D007205 ORTHO05D009175 2.8e-16 89.4 161 34.2
Migut.F01128 Erythranthe guttata HOM05D007205 ORTHO05D009175 6.3e-16 88.2 124 41.9
Aa31sc535G20 Aethionema arabicum HOM05D007205 ORTHO05D009175 8.3e-16 87.8 154 34.4
A03p67950 Brassica napus HOM05D007205 ORTHO05D009175 8.3e-16 87.8 130 40.8
BraA01t02676Z Brassica rapa HOM05D007205 ORTHO05D009175 8.3e-16 87.8 130 40.8
Aqoxy2G00583 Aquilegia oxysepala HOM05D007205 ORTHO05D009175 1.1e-15 87.4 152 37.5
Aa31sc352G60 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.4e-15 87.0 154 34.4
AL6G17070 Arabidopsis lyrata HOM05D007205 ORTHO05D009175 1.8e-15 86.7 128 39.1
PSO675G8316 Papaver somniferum HOM05D007205 ORTHO05D009175 1.8e-15 86.7 148 41.2
Aa31sc352G30 Aethionema arabicum HOM05D007205 ORTHO05D009175 3.1e-15 85.9 154 33.8
Aa31sc947G10 Aethionema arabicum HOM05D007205 ORTHO05D009175 9.1e-15 84.3 154 35.1
Sp6g35950 Schrenkiella parvula HOM05D007205 ORTHO05D009175 1.6e-14 83.6 157 33.8
PSO017G6138 Papaver somniferum HOM05D007205 ORTHO05D009175 3.5e-14 82.4 148 39.9
SGA_v2.0_scaffold70G23481 Striga asiatica HOM05D007205 ORTHO05D009175 1.0e-13 80.9 118 42.4
Dinv18560 Davidia involucrata HOM05D007205 ORTHO05D009175 1.3e-13 80.5 155 34.8
HanXRQChr17g0542941 Helianthus annuus HOM05D007205 ORTHO05D009175 7.2e-12 74.7 128 35.2
Aa31LG5G24200 Aethionema arabicum HOM05D007205 ORTHO05D009175 1.6e-11 73.6 109 38.5
BcaB01g05708 Brassica carinata HOM05D007205 ORTHO05D009175 1.8e-10 70.1 117 37.6
unitig_0.g450 Utricularia gibba HOM05D007205 ORTHO05D009175 2.3e-10 69.7 121 35.5
Actinidia12481 Actinidia chinensis HOM05D007205 ORTHO05D009175 5.2e-10 68.6 101 42.6
PGR042G1067 Punica granatum HOM05D007205 ORTHO05D009175 9.8e-09 64.3 165 28.5
CAN.G86.39 Capsicum annuum HOM05D007205 ORTHO05D009175 8.3e-08 61.2 101 39.6
C03p03430 Brassica napus HOM05D007205 ORTHO05D009175 5.4e-07 58.5 65 50.8
BolC3t12884H Brassica oleracea HOM05D007205 ORTHO05D009175 5.4e-07 58.5 65 50.8
BcaB01g06014 Brassica carinata HOM05D007205 ORTHO05D009175 9.2e-07 57.8 86 41.9


User provided reference genes

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