Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0411211 Rosa chinensis HOM05D001235 ORTHO05D005684 2.6e-55 218.4 102 100.0
FAN22G1075 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.0e-43 179.9 88 92.0
MD04G1025900 Malus domestica HOM05D001235 ORTHO05D005684 1.0e-43 179.9 88 92.0
FAN07G2568 Fragaria x ananassa HOM05D001235 ORTHO05D005684 1.3e-43 179.5 88 92.0
Prupe.1G175200 Prunus persica HOM05D001235 ORTHO05D005684 1.3e-43 179.5 88 90.9
FvH4_4g12510 Fragaria vesca HOM05D001235 ORTHO05D005684 2.2e-43 178.7 88 90.9
RcHm_v2.0_Chr4g0411331 Rosa chinensis HOM05D001235 ORTHO05D005684 6.5e-43 177.2 88 90.9
Ciclev10004968m.g Citrus clementina HOM05D001235 ORTHO05D005684 8.5e-43 176.8 89 88.8
Dinv13678 Davidia involucrata HOM05D001235 ORTHO05D005684 2.5e-42 175.3 88 88.6
FAN12G0235 Fragaria x ananassa HOM05D001235 ORTHO05D005684 3.2e-42 174.9 88 89.8
CiPaw.01G110000 Carya illinoinensis HOM05D001235 ORTHO05D005684 7.2e-42 173.7 88 88.6
COL.COLO4_08689 Corchorus olitorius HOM05D001235 ORTHO05D005684 7.2e-42 173.7 94 85.1
Eucgr.H00494 Eucalyptus grandis HOM05D001235 ORTHO05D005684 7.2e-42 173.7 88 86.4
Aqoxy5G00036 Aquilegia oxysepala HOM05D001235 ORTHO05D005684 1.2e-41 172.9 88 87.5
Gohir.A10G133100 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.2e-41 172.9 88 88.6
Gohir.D10G133800 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.2e-41 172.9 88 88.6
Gorai.011G147600 Gossypium raimondii HOM05D001235 ORTHO05D005684 1.2e-41 172.9 88 88.6
Lsat_1_v5_gn_1_69940 Lactuca sativa HOM05D001235 ORTHO05D005684 1.6e-41 172.6 88 88.6
Oeu001997.1 Olea europaea HOM05D001235 ORTHO05D005684 1.6e-41 172.6 88 88.6
Potri.002G234500 Populus trichocarpa HOM05D001235 ORTHO05D005684 1.6e-41 172.6 88 88.6
PSO170G5672 Papaver somniferum HOM05D001235 ORTHO05D005684 2.1e-41 172.2 88 88.6
PSO357G0146 Papaver somniferum HOM05D001235 ORTHO05D005684 2.1e-41 172.2 88 88.6
TWI73G0237 Tripterygium wilfordii HOM05D001235 ORTHO05D005684 2.1e-41 172.2 88 88.6
HanXRQChr01g0021711 Helianthus annuus HOM05D001235 ORTHO05D005684 2.7e-41 171.8 88 88.6
Thecc.04G188100 Theobroma cacao HOM05D001235 ORTHO05D005684 2.7e-41 171.8 88 89.8
GSVIVG01031639001 Vitis vinifera HOM05D001235 ORTHO05D005684 3.6e-41 171.4 88 87.5
Dinv27164 Davidia involucrata HOM05D001235 ORTHO05D005684 4.7e-41 171.0 88 87.5
Rhsim01G0114000 Rhododendron simsii HOM05D001235 ORTHO05D005684 4.7e-41 171.0 88 87.5
Sabra02G0178900 Salix brachista HOM05D001235 ORTHO05D005684 4.7e-41 171.0 88 86.4
Atru.chr3.1828 Acer truncatum HOM05D001235 ORTHO05D005684 6.1e-41 170.6 88 86.4
CANSAT78G1591 Cannabis sativa HOM05D001235 ORTHO05D005684 6.1e-41 170.6 88 88.6
Hma1.2p1_0349F.1_g132360 Hydrangea macrophylla HOM05D001235 ORTHO05D005684 6.1e-41 170.6 88 88.6
Manes.05G194300 Manihot esculenta HOM05D001235 ORTHO05D005684 6.1e-41 170.6 88 87.5
TAR362G0786 Trochodendron aralioides HOM05D001235 ORTHO05D005684 8.0e-41 170.2 88 87.5
Cfa008685 Carpinus fangiana HOM05D001235 ORTHO05D005684 1.0e-40 169.9 88 87.5
Haze_11704 Corylus avellana HOM05D001235 ORTHO05D005684 1.0e-40 169.9 88 87.5
Duzib151G0601 Durio zibethinus HOM05D001235 ORTHO05D005684 1.0e-40 169.9 89 87.6
SalBow6G1240 Salvia bowleyana HOM05D001235 ORTHO05D005684 1.4e-40 169.5 88 87.5
QL06p027955 Quercus lobata HOM05D001235 ORTHO05D005684 1.8e-40 169.1 88 85.2
Sabra14G0111700 Salix brachista HOM05D001235 ORTHO05D005684 1.8e-40 169.1 88 85.2
Hund19034 Selenicereus undatus HOM05D001235 ORTHO05D005684 1.8e-40 169.1 88 88.6
Ah.04g149690 Amaranthus hybridus HOM05D001235 ORTHO05D005684 2.3e-40 168.7 88 87.5
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 2.3e-40 168.7 88 85.2
Sc19g0007550 Simmondsia chinensis HOM05D001235 ORTHO05D005684 2.3e-40 168.7 95 81.1
TPR.G8889 Trifolium pratense HOM05D001235 ORTHO05D005684 2.3e-40 168.7 88 86.4
AUR62018504 Chenopodium quinoa HOM05D001235 ORTHO05D005684 3.0e-40 168.3 88 86.4
Duzib212G0549 Durio zibethinus HOM05D001235 ORTHO05D005684 4.0e-40 167.9 88 87.5
Actinidia35919 Actinidia chinensis HOM05D001235 ORTHO05D005684 5.2e-40 167.5 88 84.1
EL10Ac3g07409 Beta vulgaris HOM05D001235 ORTHO05D005684 5.2e-40 167.5 88 86.4
Ca_11427_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 5.2e-40 167.5 89 83.1
Ca_29863_v3 Cicer arietinum L. HOM05D001235 ORTHO05D005684 5.2e-40 167.5 89 83.1
Lj6C311G3 Lonicera japonica HOM05D001235 ORTHO05D005684 5.2e-40 167.5 88 87.5
Potri.014G147900 Populus trichocarpa HOM05D001235 ORTHO05D005684 5.2e-40 167.5 88 84.1
Medtr6g093240 Medicago truncatula HOM05D001235 ORTHO05D005684 6.7e-40 167.2 88 85.2
Gohir.D09G202400 Gossypium hirsutum HOM05D001235 ORTHO05D005684 1.2e-39 166.4 88 84.1
Gorai.006G226300 Gossypium raimondii HOM05D001235 ORTHO05D005684 1.2e-39 166.4 88 84.1
Phvul.007G001400 Phaseolus vulgaris HOM05D001235 ORTHO05D005684 1.2e-39 166.4 89 84.3
CSS0039330 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 1.5e-39 166.0 88 84.1
Cc03_g10000 Coffea canephora HOM05D001235 ORTHO05D005684 1.5e-39 166.0 88 86.4
SGA_v2.0_scaffold28G12047 Striga asiatica HOM05D001235 ORTHO05D005684 1.5e-39 166.0 88 87.5
VMungo0720G0937 Vigna mungo HOM05D001235 ORTHO05D005684 1.5e-39 166.0 89 84.3
MELO3C017735.2 Cucumis melo HOM05D001235 ORTHO05D005684 2.0e-39 165.6 88 83.0
ECA248G1402 Erigeron canadensis HOM05D001235 ORTHO05D005684 2.0e-39 165.6 88 85.2
Lalb_Chr02g0144531 Lupinus albus HOM05D001235 ORTHO05D005684 2.0e-39 165.6 88 85.2
Psat6g244000 Pisum sativum HOM05D001235 ORTHO05D005684 2.0e-39 165.6 88 84.1
CsaV3_4G003110 Cucumis sativus L. HOM05D001235 ORTHO05D005684 2.6e-39 165.2 88 81.8
vmacro20797 Vaccinium macrocarpon HOM05D001235 ORTHO05D005684 3.3e-39 164.9 88 85.2
Gohir.A09G209000 Gossypium hirsutum HOM05D001235 ORTHO05D005684 5.7e-39 164.1 88 83.0
MSTRG.22434 Avicennia marina HOM05D001235 ORTHO05D005684 9.7e-39 163.3 88 85.2
FAN17G0427 Fragaria x ananassa HOM05D001235 ORTHO05D005684 9.7e-39 163.3 80 93.8
Lj5g0010068 Lotus japonicus HOM05D001235 ORTHO05D005684 9.7e-39 163.3 88 81.8
Cpa.g.sc8.311 Carica papaya HOM05D001235 ORTHO05D005684 1.3e-38 162.9 88 84.1
Peaxi162Scf00286g00547 Petunia axillaris HOM05D001235 ORTHO05D005684 1.3e-38 162.9 88 81.8
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.3e-38 162.9 88 86.4
AT5G26570 Arabidopsis thaliana HOM05D001235 ORTHO05D005684 1.7e-38 162.5 88 80.7
DCAR_027478 Daucus carota HOM05D001235 ORTHO05D005684 1.7e-38 162.5 88 84.1
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 3.7e-38 161.4 88 80.7
Migut.N03329 Erythranthe guttata HOM05D001235 ORTHO05D005684 3.7e-38 161.4 88 84.1
BcaB07g29956 Brassica carinata HOM05D001235 ORTHO05D005684 6.3e-38 160.6 88 80.7
BcaC03g17860 Brassica carinata HOM05D001235 ORTHO05D005684 6.3e-38 160.6 88 80.7
C02p59020 Brassica napus HOM05D001235 ORTHO05D005684 6.3e-38 160.6 88 80.7
BolC2t11957H Brassica oleracea HOM05D001235 ORTHO05D005684 6.3e-38 160.6 88 80.7
BraA02t08895Z Brassica rapa HOM05D001235 ORTHO05D005684 6.3e-38 160.6 88 80.7
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 6.3e-38 160.6 88 80.7
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 6.3e-38 160.6 88 80.7
Thhalv10003634m.g Eutrema salsugineum HOM05D001235 ORTHO05D005684 8.2e-38 160.2 88 80.7
SEGI_29879 Sequoiadendron giganteum HOM05D001235 ORTHO05D005684 8.2e-38 160.2 88 80.7
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 1.1e-37 159.8 88 79.5
Glyma.10G298000 Glycine max HOM05D001235 ORTHO05D005684 1.1e-37 159.8 94 79.8
Aa31LG11G10130 Aethionema arabicum HOM05D001235 ORTHO05D005684 1.4e-37 159.5 88 80.7
BcaC04g23619 Brassica carinata HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 79.5
A09p05840 Brassica napus HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 79.5
C09p06430 Brassica napus HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 79.5
BolC9t53563H Brassica oleracea HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 79.5
BraA09t36226Z Brassica rapa HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 79.5
Sed0003584 Sechium edule HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 79.5
Sed0023516 Sechium edule HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 79.5
Solyc09g098040.3 Solanum lycopersicum HOM05D001235 ORTHO05D005684 2.4e-37 158.7 88 80.7
BcaB04g19735 Brassica carinata HOM05D001235 ORTHO05D005684 3.1e-37 158.3 88 79.5
ATR0686G153 Amborella trichopoda HOM05D001235 ORTHO05D005684 4.1e-37 157.9 88 81.8
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 5.3e-37 157.5 88 79.5
PGSC0003DMG400016613 Solanum tuberosum HOM05D001235 ORTHO05D005684 5.3e-37 157.5 88 79.5
A02p39300 Brassica napus HOM05D001235 ORTHO05D005684 9.1e-37 156.8 88 79.5
THA.LOC104818773 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 9.1e-37 156.8 88 81.8
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 1.6e-36 156.0 88 78.4
Nitab4.5_0012294g0010 Nicotiana tabacum HOM05D001235 ORTHO05D005684 2.0e-36 155.6 96 72.9
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 2.7e-36 155.2 88 78.4
Sopen09g035960 Solanum pennellii HOM05D001235 ORTHO05D005684 2.7e-36 155.2 88 79.5
Zm00001eb409850 Zea mays HOM05D001235 ORTHO05D005684 4.5e-36 154.5 88 79.5
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 1.7e-35 152.5 88 77.3
CDE07G0946 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 2.2e-35 152.1 88 77.3
Nn1g08260 Nelumbo nucifera HOM05D001235 ORTHO05D005684 2.2e-35 152.1 88 80.7
HPP92_009959 Vanilla planifolia HOM05D001235 ORTHO05D005684 5.0e-35 151.0 88 76.1
Mapoly0096s0069 Marchantia polymorpha HOM05D001235 ORTHO05D005684 3.2e-34 148.3 88 75.0
Pp3c18_14870 Physcomitrium patens HOM05D001235 ORTHO05D005684 9.4e-34 146.7 88 76.1
Os12g0297500 Oryza sativa ssp. japonica HOM05D001235 ORTHO05D005684 8.0e-33 143.7 88 75.0
SMO146G0043 Selaginella moellendorffii HOM05D001235 ORTHO05D005684 1.8e-32 142.5 89 74.2
CSS0015752 Camellia sinensis var. sinensis HOM05D001235 ORTHO05D005684 3.0e-32 141.7 82 80.5
CBR_g30239 Chara braunii HOM05D001235 ORTHO05D005684 1.8e-29 132.5 88 68.2
BcaC04g23551 Brassica carinata HOM05D001235 ORTHO05D005684 2.4e-29 132.1 94 66.0
AUR62020915 Chenopodium quinoa HOM05D001235 ORTHO05D005684 2.4e-29 132.1 165 45.5
Pp3c14_19150 Physcomitrium patens HOM05D001235 ORTHO05D005684 3.4e-23 111.7 88 61.4
MCO13G077 Micromonas commoda HOM05D001235 ORTHO05D005684 3.3e-18 95.1 93 50.5
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 1.4e-16 89.7 94 44.7
Medtr1g117000 Medicago truncatula HOM05D001235 ORTHO05D005684 1.7e-14 82.8 45 75.6
ClCG07G015490 Citrullus lanatus HOM05D001235 ORTHO05D005684 4.9e-14 81.3 40 90.0
Pp3c17_18900 Physcomitrium patens HOM05D001235 ORTHO05D005684 1.1e-10 70.1 87 41.4
PRCOL_00000902 Prasinoderma coloniale HOM05D001235 ORTHO05D005684 1.5e-10 69.7 85 40.0


User provided reference genes

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