Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 1.8e-199 699.1 369 100.0
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 5.4e-180 634.4 369 92.1
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 6.2e-168 594.3 369 86.4
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.6e-160 569.7 401 79.1
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 6.7e-138 494.6 321 82.9
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 2.9e-117 426.0 381 64.6
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 6.3e-96 355.1 333 61.9
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.2e-92 342.4 393 56.0
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 9.5e-84 314.7 417 49.6
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 5.2e-82 308.9 381 51.7
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 8.9e-82 308.1 380 49.5
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.6e-81 306.6 395 49.9
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 5.7e-81 305.4 398 49.5
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.7e-80 303.9 381 49.1
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 2.2e-80 303.5 375 49.6
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 4.1e-79 299.3 416 45.9
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 5.9e-78 295.4 398 48.0
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 7.8e-78 295.0 377 49.6
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 6.6e-77 292.0 404 48.3
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 8.6e-77 291.6 406 47.8
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 8.6e-77 291.6 394 48.2
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.9e-76 290.4 414 49.3
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.8e-75 286.6 423 44.7
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 4.7e-75 285.8 577 38.0
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 5.2e-74 282.3 419 47.0
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 6.8e-74 282.0 442 43.9
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.2e-73 281.2 376 48.9
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.0e-73 280.4 407 45.2
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 5.8e-73 278.9 406 44.8
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 7.5e-73 278.5 406 45.3
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.3e-72 277.7 376 48.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.3e-72 277.7 421 44.2
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 2.2e-72 276.9 380 48.7
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 8.3e-72 275.0 430 47.0
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.1e-71 274.6 408 45.6
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.4e-71 274.2 383 47.8
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 3.2e-71 273.1 380 47.1
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 5.4e-71 272.3 384 47.4
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 5.4e-71 272.3 422 42.9
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 2.7e-70 270.0 386 46.6
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 3.5e-70 269.6 371 47.4
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.1e-68 264.6 389 47.6
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 9.5e-68 261.5 395 44.6
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.2e-67 261.2 408 45.6
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 2.3e-66 256.9 372 45.2
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 2.3e-66 256.9 356 46.1
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 3.1e-66 256.5 387 45.0
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 8.9e-66 255.0 367 46.3
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.2e-65 254.6 447 41.2
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 3.4e-65 253.1 445 41.8
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 4.4e-65 252.7 217 65.4
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 9.8e-65 251.5 200 66.0
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.1e-63 248.1 370 45.4
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.4e-63 247.7 382 45.5
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 3.2e-63 246.5 380 46.1
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 7.1e-63 245.4 373 44.0
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.2e-62 244.6 394 43.1
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 3.5e-62 243.0 391 43.2
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 2.3e-61 240.4 250 54.8
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 6.6e-61 238.8 407 38.6
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.1e-60 238.0 406 42.4
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 2.5e-60 236.9 199 62.8
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.5e-60 236.9 215 60.5
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 3.3e-60 236.5 408 41.2
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.4e-58 231.1 388 41.8
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 3.1e-58 229.9 207 59.9
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 3.1e-58 229.9 255 52.5
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 1.5e-57 227.6 383 40.7
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 7.6e-57 225.3 416 38.2
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 7.6e-57 225.3 379 42.2
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.2e-56 223.8 388 40.2
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.9e-56 223.4 493 36.9
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 4.9e-56 222.6 368 43.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 6.4e-56 222.2 390 42.8
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.4e-55 221.1 374 40.9
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 3.2e-55 219.9 228 54.4
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 5.4e-55 219.2 407 37.1
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 9.2e-55 218.4 368 45.1
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.2e-54 218.0 393 38.7
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-54 218.0 430 38.1
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-54 218.0 428 36.7
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.0e-53 214.9 406 38.4
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.7e-53 214.2 382 42.1
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.5e-52 210.3 389 41.6
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 3.3e-52 209.9 156 66.0
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 4.3e-52 209.5 343 39.4
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 6.2e-51 205.7 370 41.4
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.4e-50 203.8 371 42.6
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 4.0e-50 203.0 373 40.2
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 3.4e-49 199.9 412 35.7
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 3.8e-48 196.4 328 44.8
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 8.4e-48 195.3 422 35.3
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.1e-47 194.9 225 46.7
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 4.3e-44 183.0 378 35.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.8e-42 177.6 130 66.2
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 4.0e-42 176.4 303 43.6
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 5.3e-42 176.0 248 46.4
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.5e-41 174.5 157 59.2
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 2.0e-41 174.1 165 56.4
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 3.4e-41 173.3 203 48.8
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.2e-40 170.6 375 36.0
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 1.1e-39 168.3 376 34.8
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 1.4e-39 167.9 376 34.8
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 1.4e-39 167.9 376 34.6
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.3e-37 161.4 378 34.7
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.9e-36 157.5 226 42.5
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.4e-34 150.6 151 51.7
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.2e-31 140.2 366 33.6
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.6e-30 137.9 145 51.7
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 6.0e-30 136.0 192 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 3.0e-29 133.7 127 53.5
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 3.0e-29 133.7 308 36.7
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 3.7e-27 126.7 234 36.3
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 6.2e-27 125.9 129 49.6
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 1.5e-25 121.3 212 41.0
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 2.1e-22 110.9 109 51.4
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.6e-22 109.8 199 38.7
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.3e-21 108.2 81 66.7
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.8e-21 107.8 83 57.8
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 3.9e-21 106.7 343 31.2
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 3.9e-21 106.7 76 68.4
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.2e-15 87.0 119 41.2
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.2e-15 86.7 165 39.4
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 1.2e-14 85.1 63 65.1
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.0e-13 82.0 317 28.4
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.1e-12 78.6 105 41.9
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.5e-12 78.2 109 41.3
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 1.9e-12 77.8 247 36.8
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.3e-12 77.0 292 30.8
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 5.7e-12 76.3 186 32.8
Zm00001eb363750 Zea mays HOM05D005116 ORTHO05D005937 1.3e-11 75.1 291 30.2
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 4.8e-11 73.2 219 30.6
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.4e-10 71.6 324 27.2
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 4.1e-10 70.1 43 69.8
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 5.0e-08 63.2 52 57.7
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 6.5e-08 62.8 55 56.4
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 1.9e-07 61.2 86 40.7
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 7.2e-07 59.3 84 40.5
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 9.4e-07 58.9 84 39.3
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.2e-06 58.5 55 49.1
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 1.6e-06 58.2 84 39.3
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 3.6e-06 57.0 65 47.7


User provided reference genes

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