Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0410241 Rosa chinensis HOM05D001260 ORTHO05D004134 3.4e-36 154.5 77 100.0
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 1.6e-25 119.0 62 95.2
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 3.0e-24 114.8 62 91.9
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.0e-24 114.8 62 91.9
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.0e-24 114.8 62 91.9
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.0e-24 114.8 62 91.9
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 1.1e-23 112.8 62 88.7
FvH4_7g23851 Fragaria vesca HOM05D001260 ORTHO05D004134 2.5e-23 111.7 62 88.7
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.3e-23 111.3 61 90.2
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 3.3e-23 111.3 61 90.2
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 6.3e-22 107.1 61 85.2
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 1.4e-21 105.9 61 85.2
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 6.9e-21 103.6 66 77.3
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 1.0e-19 99.8 63 79.4
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 1.3e-19 99.4 61 78.7
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 1.7e-19 99.0 66 74.2
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 1.7e-19 99.0 61 80.3
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 1.7e-19 99.0 61 80.3
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 1.7e-19 99.0 61 78.7
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 2.9e-19 98.2 61 80.3
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 3.8e-19 97.8 66 75.8
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 3.8e-19 97.8 66 75.8
Manes.07G121400 Manihot esculenta HOM05D001260 ORTHO05D004134 3.8e-19 97.8 61 80.3
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 3.8e-19 97.8 61 78.7
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 3.8e-19 97.8 61 78.7
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 5.0e-19 97.4 62 75.8
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 5.0e-19 97.4 66 74.2
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 6.5e-19 97.1 61 77.0
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 6.5e-19 97.1 61 80.3
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 8.5e-19 96.7 66 72.7
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 1.1e-18 96.3 61 77.0
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 1.4e-18 95.9 61 75.4
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 2.5e-18 95.1 61 80.3
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 2.5e-18 95.1 66 72.7
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 3.2e-18 94.7 59 78.0
Gorai.011G270300 Gossypium raimondii HOM05D001260 ORTHO05D004134 3.2e-18 94.7 66 72.7
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 3.2e-18 94.7 66 71.2
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 5.5e-18 94.0 61 75.4
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 5.5e-18 94.0 61 75.4
Gorai.011G270500 Gossypium raimondii HOM05D001260 ORTHO05D004134 7.2e-18 93.6 66 72.7
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 7.2e-18 93.6 64 70.3
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 9.3e-18 93.2 62 77.4
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 1.6e-17 92.4 60 78.3
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 2.1e-17 92.0 60 81.7
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 2.1e-17 92.0 61 77.0
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 2.7e-17 91.7 62 72.6
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 2.7e-17 91.7 65 69.2
Gohir.D10G236624 Gossypium hirsutum HOM05D001260 ORTHO05D004134 3.6e-17 91.3 66 69.7
Thecc.10G033600 Theobroma cacao HOM05D001260 ORTHO05D004134 4.6e-17 90.9 66 69.7
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 6.1e-17 90.5 61 75.4
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 6.1e-17 90.5 66 66.7
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 7.9e-17 90.1 62 74.2
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 7.9e-17 90.1 61 75.4
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 1.0e-16 89.7 60 78.3
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 1.8e-16 89.0 62 74.2
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 2.3e-16 88.6 61 73.8
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 6.7e-16 87.0 62 72.6
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 8.7e-16 86.7 61 73.8
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 8.7e-16 86.7 62 72.6
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 8.7e-16 86.7 62 72.6
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 1.5e-15 85.9 61 72.1
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 1.9e-15 85.5 58 77.6
Ciclev10030832m.g Citrus clementina HOM05D001260 ORTHO05D004134 1.9e-15 85.5 52 76.9
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 4.3e-15 84.3 58 75.9
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 4.3e-15 84.3 58 74.1
TPR.G25828 Trifolium pratense HOM05D001260 ORTHO05D004134 7.4e-15 83.6 61 68.9
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 1.6e-14 82.4 60 75.0
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 1.6e-14 82.4 63 73.0
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 2.2e-14 82.0 63 65.1
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 2.8e-14 81.6 61 63.9
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 8.2e-14 80.1 62 69.4
Duzib128G0118 Durio zibethinus HOM05D001260 ORTHO05D004134 1.1e-13 79.7 61 67.2
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 1.1e-13 79.7 61 67.2
Oeu031370.1 Olea europaea HOM05D001260 ORTHO05D004134 1.1e-13 79.7 60 68.3
Hund22801 Selenicereus undatus HOM05D001260 ORTHO05D004134 1.1e-13 79.7 61 67.2
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 1.4e-13 79.3 61 67.2
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 1.8e-13 79.0 61 63.9
CAN.G986.45 Capsicum annuum HOM05D001260 ORTHO05D004134 1.8e-13 79.0 61 60.7
CAN.G986.46 Capsicum annuum HOM05D001260 ORTHO05D004134 1.8e-13 79.0 61 60.7
RcHm_v2.0_Chr1g0315431 Rosa chinensis HOM05D001260 ORTHO05D004134 1.8e-13 79.0 60 71.7
RcHm_v2.0_Chr1g0324411 Rosa chinensis HOM05D001260 ORTHO05D004134 1.8e-13 79.0 60 71.7
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 1.8e-13 79.0 62 62.9
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 1.8e-13 79.0 53 69.8
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 2.4e-13 78.6 64 60.9
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 2.4e-13 78.6 54 75.9
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 2.4e-13 78.6 63 69.8
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 3.1e-13 78.2 60 65.0
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 3.1e-13 78.2 50 70.0
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 5.3e-13 77.4 63 71.4
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 9.1e-13 76.6 62 61.3
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 9.1e-13 76.6 60 63.3
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 1.5e-12 75.9 64 62.5
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 2.0e-12 75.5 59 64.4
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 2.6e-12 75.1 65 63.1
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 3.4e-12 74.7 61 62.3
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 3.4e-12 74.7 59 62.7
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 3.4e-12 74.7 65 60.0
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 3.4e-12 74.7 58 60.3
RcHm_v2.0_Chr1g0369591 Rosa chinensis HOM05D001260 ORTHO05D004134 3.4e-12 74.7 60 68.3
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 4.5e-12 74.3 64 60.9
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 5.9e-12 73.9 61 62.3
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 1.0e-11 73.2 61 65.6
Sabra10G0152200 Salix brachista HOM05D001260 ORTHO05D004134 1.0e-11 73.2 60 65.0
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 2.9e-11 71.6 63 61.9
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 2.9e-11 71.6 61 60.7
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 3.8e-11 71.2 61 57.4
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 5.0e-11 70.9 61 62.3
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 5.0e-11 70.9 61 62.3
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 5.0e-11 70.9 61 62.3
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 5.0e-11 70.9 61 62.3
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 6.5e-11 70.5 63 63.5
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 8.5e-11 70.1 61 62.3
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 8.5e-11 70.1 63 63.5
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 1.4e-10 69.3 61 62.3
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 1.4e-10 69.3 61 62.3
HPP92_020548 Vanilla planifolia HOM05D001260 ORTHO05D004134 7.2e-10 67.0 65 52.3
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 4.6e-09 64.3 47 66.0
Rhsim04G0027700 Rhododendron simsii HOM05D001260 ORTHO05D004134 7.9e-09 63.5 67 50.7
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 7.9e-09 63.5 50 60.0
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 1.0e-08 63.2 49 57.1
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 2.3e-08 62.0 51 58.8
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 3.9e-08 61.2 65 55.4
Rhsim08G0019600 Rhododendron simsii HOM05D001260 ORTHO05D004134 5.1e-08 60.8 51 58.8
Nitab4.5_0000779g0070 Nicotiana tabacum HOM05D001260 ORTHO05D004134 1.1e-07 59.7 68 47.1
Nitab4.5_0004474g0060 Nicotiana tabacum HOM05D001260 ORTHO05D004134 3.3e-07 58.2 59 47.5
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 1.3e-06 56.2 54 50.0
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.7e-06 55.8 52 51.9
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 2.2e-06 55.5 60 53.3
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 6.3e-06 53.9 63 41.3
AagrBONN_evm.TU.Sc2ySwM_344.891 Anthoceros agrestis HOM05D001260 ORTHO05D004134 8.2e-06 53.5 59 44.1


User provided reference genes

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