Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0410121 Rosa chinensis HOM05D007184 ORTHO05D008987 1.6e-115 419.5 218 100.0
RcHm_v2.0_Chr5g0037571 Rosa chinensis HOM05D007184 ORTHO05D008987 2.6e-113 412.1 218 98.2
FvH4_3g21830 Fragaria vesca HOM05D007184 ORTHO05D008987 2.2e-104 382.5 218 91.3
FAN11G2616 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.2e-104 382.5 218 91.3
FAN25G3727 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.2e-102 376.7 218 90.4
FAN21G0378 Fragaria x ananassa HOM05D007184 ORTHO05D008987 2.7e-102 375.6 218 89.9
Prupe.4G202500 Prunus persica HOM05D007184 ORTHO05D008987 4.4e-89 331.6 219 82.2
MD03G1211500 Malus domestica HOM05D007184 ORTHO05D008987 1.5e-76 290.0 220 75.5
CiPaw.11G183700 Carya illinoinensis HOM05D007184 ORTHO05D008987 4.9e-72 275.0 227 70.5
CSS0032425 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.0e-69 267.3 224 69.2
CSS0036378 Camellia sinensis var. sinensis HOM05D007184 ORTHO05D008987 1.0e-69 267.3 224 69.2
Gohir.D13G146000 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.7e-69 266.5 221 70.6
Oeu062614.1 Olea europaea HOM05D007184 ORTHO05D008987 8.7e-69 264.2 222 68.5
Cfa020415 Carpinus fangiana HOM05D007184 ORTHO05D008987 1.1e-68 263.8 222 68.5
Gohir.A13G141300 Gossypium hirsutum HOM05D007184 ORTHO05D008987 1.5e-68 263.5 221 70.1
Gorai.013G163800 Gossypium raimondii HOM05D007184 ORTHO05D008987 1.5e-68 263.5 221 70.1
Lj3g0025244 Lotus japonicus HOM05D007184 ORTHO05D008987 4.3e-68 261.9 217 69.1
TAR624G0273 Trochodendron aralioides HOM05D007184 ORTHO05D008987 1.1e-66 257.3 224 67.0
Ciclev10009433m.g Citrus clementina HOM05D007184 ORTHO05D008987 4.0e-66 255.4 228 65.8
Hma1.2p1_1869F.1_g306030 Hydrangea macrophylla HOM05D007184 ORTHO05D008987 4.0e-66 255.4 229 66.8
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 6.9e-66 254.6 184 74.5
Lalb_Chr14g0366141 Lupinus albus HOM05D007184 ORTHO05D008987 1.5e-65 253.4 222 67.1
Thecc.07G052800 Theobroma cacao HOM05D007184 ORTHO05D008987 2.6e-65 252.7 223 67.3
COL.COLO4_09571 Corchorus olitorius HOM05D007184 ORTHO05D008987 3.4e-65 252.3 186 74.2
QL08p013337 Quercus lobata HOM05D007184 ORTHO05D008987 3.4e-65 252.3 230 65.2
QL08p013467 Quercus lobata HOM05D007184 ORTHO05D008987 5.8e-65 251.5 217 69.1
Nitab4.5_0000397g0060 Nicotiana tabacum HOM05D007184 ORTHO05D008987 7.6e-65 251.1 215 68.4
Potri.011G132900 Populus trichocarpa HOM05D007184 ORTHO05D008987 1.3e-64 250.4 226 65.0
Solyc07g064100.1 Solanum lycopersicum HOM05D007184 ORTHO05D008987 2.9e-64 249.2 193 70.5
Sopen07g032240 Solanum pennellii HOM05D007184 ORTHO05D008987 2.9e-64 249.2 193 70.5
EL10Ac4g07971 Beta vulgaris HOM05D007184 ORTHO05D008987 6.4e-64 248.1 228 65.8
Medtr2g082930 Medicago truncatula HOM05D007184 ORTHO05D008987 6.4e-64 248.1 216 63.9
BcaC08g43280 Brassica carinata HOM05D007184 ORTHO05D008987 8.4e-64 247.7 212 68.9
C06p06300 Brassica napus HOM05D007184 ORTHO05D008987 8.4e-64 247.7 212 68.9
BolC6t35739H Brassica oleracea HOM05D007184 ORTHO05D008987 8.4e-64 247.7 212 68.9
AUR62015645 Chenopodium quinoa HOM05D007184 ORTHO05D008987 8.4e-64 247.7 236 62.7
AT1G51100 Arabidopsis thaliana HOM05D007184 ORTHO05D008987 1.1e-63 247.3 209 68.4
HanXRQChr05g0159221 Helianthus annuus HOM05D007184 ORTHO05D008987 1.1e-63 247.3 217 67.3
Glyma.12G214300 Glycine max HOM05D007184 ORTHO05D008987 1.4e-63 246.9 212 67.0
Peaxi162Scf01086g00015 Petunia axillaris HOM05D007184 ORTHO05D008987 1.4e-63 246.9 218 67.4
CARHR041120 Cardamine hirsuta HOM05D007184 ORTHO05D008987 1.9e-63 246.5 184 73.9
Manes.03G122800 Manihot esculenta HOM05D007184 ORTHO05D008987 1.9e-63 246.5 225 64.9
PGSC0003DMG400019260 Solanum tuberosum HOM05D007184 ORTHO05D008987 4.2e-63 245.4 196 68.9
Carub.0001s4001 Capsella rubella HOM05D007184 ORTHO05D008987 7.1e-63 244.6 184 72.8
AUR62020554 Chenopodium quinoa HOM05D007184 ORTHO05D008987 7.1e-63 244.6 236 62.7
TPR.G36807 Trifolium pratense HOM05D007184 ORTHO05D008987 7.1e-63 244.6 216 64.8
GSVIVG01014606001 Vitis vinifera HOM05D007184 ORTHO05D008987 7.1e-63 244.6 210 66.2
Glyma.13G287300 Glycine max HOM05D007184 ORTHO05D008987 9.3e-63 244.2 213 66.2
Cc05_g13240 Coffea canephora HOM05D007184 ORTHO05D008987 1.6e-62 243.4 204 68.6
Nitab4.5_0009192g0030 Nicotiana tabacum HOM05D007184 ORTHO05D008987 2.1e-62 243.0 205 68.3
AL1G58900 Arabidopsis lyrata HOM05D007184 ORTHO05D008987 2.7e-62 242.7 179 74.9
A06p02680 Brassica napus HOM05D007184 ORTHO05D008987 2.7e-62 242.7 160 81.9
Sabra11G0119700 Salix brachista HOM05D007184 ORTHO05D008987 2.7e-62 242.7 225 63.1
Sp1g37830 Schrenkiella parvula HOM05D007184 ORTHO05D008987 2.7e-62 242.7 178 75.3
Thhalv10011779m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 3.5e-62 242.3 176 76.1
BcaB07g33556 Brassica carinata HOM05D007184 ORTHO05D008987 4.6e-62 241.9 180 74.4
Duzib268G1070 Durio zibethinus HOM05D007184 ORTHO05D008987 4.6e-62 241.9 179 74.9
CANSAT11G2419 Cannabis sativa HOM05D007184 ORTHO05D008987 6.0e-62 241.5 178 73.6
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 7.9e-62 241.1 163 78.5
MELO3C016627.2 Cucumis melo HOM05D007184 ORTHO05D008987 1.3e-61 240.4 224 65.2
THA.LOC104817896 Tarenaya hassleriana HOM05D007184 ORTHO05D008987 1.3e-61 240.4 156 83.3
BraA06t23477Z Brassica rapa HOM05D007184 ORTHO05D008987 1.8e-61 240.0 160 80.6
ClCG10G005800 Citrullus lanatus HOM05D007184 ORTHO05D008987 1.8e-61 240.0 222 65.3
CsaV3_3G005480 Cucumis sativus L. HOM05D007184 ORTHO05D008987 1.8e-61 240.0 224 64.3
Migut.H01857 Erythranthe guttata HOM05D007184 ORTHO05D008987 1.8e-61 240.0 222 65.8
Phvul.005G091600 Phaseolus vulgaris HOM05D007184 ORTHO05D008987 3.0e-61 239.2 213 65.7
VMungo1080G0323 Vigna mungo HOM05D007184 ORTHO05D008987 3.0e-61 239.2 209 67.5
SalBow7G0016 Salvia bowleyana HOM05D007184 ORTHO05D008987 1.3e-59 233.8 191 68.1
PGR031G2970 Punica granatum HOM05D007184 ORTHO05D008987 2.8e-59 232.6 207 66.7
Nn1g03662 Nelumbo nucifera HOM05D007184 ORTHO05D008987 4.8e-59 231.9 150 82.0
QL08p013286 Quercus lobata HOM05D007184 ORTHO05D008987 4.8e-59 231.9 223 63.2
arahy.Tifrunner.gnm1.ann1.538Z4G Arachis hypogaea HOM05D007184 ORTHO05D008987 1.8e-58 229.9 241 58.1
TWI38G1172 Tripterygium wilfordii HOM05D007184 ORTHO05D008987 1.2e-57 227.3 215 61.9
Aa31LG10G3410 Aethionema arabicum HOM05D006358 ORTHO05D008185 5.8e-57 224.9 179 72.1
unitig_52.g17357 Utricularia gibba HOM05D007184 ORTHO05D008987 5.8e-57 224.9 165 74.5
Haze_09610 Corylus avellana HOM05D007184 ORTHO05D008987 7.6e-57 224.6 214 61.2
Psat5g251800 Pisum sativum HOM05D007184 ORTHO05D008987 9.9e-57 224.2 217 62.2
Cpa.g.sc97.69 Carica papaya HOM05D007184 ORTHO05D008987 1.1e-55 220.7 151 79.5
Ca_01753_v3 Cicer arietinum L. HOM05D007184 ORTHO05D008987 1.9e-55 219.9 184 70.1
Atru.BG.150.p Acer truncatum HOM05D007184 ORTHO05D008987 5.5e-55 218.4 162 74.7
Lj1P863T33 Lonicera japonica HOM05D007184 ORTHO05D008987 5.5e-55 218.4 175 70.3
PSO675G5359 Papaver somniferum HOM05D007184 ORTHO05D008987 1.8e-53 213.4 223 59.6
Aqoxy4G02072 Aquilegia oxysepala HOM05D007184 ORTHO05D008987 6.7e-53 211.5 221 57.5
ClCG03G004100 Citrullus lanatus HOM05D007184 ORTHO05D008987 8.7e-53 211.1 169 69.2
PSO541G2827 Papaver somniferum HOM05D007184 ORTHO05D008987 8.7e-53 211.1 223 59.2
Sed0004555 Sechium edule HOM05D007184 ORTHO05D008987 1.8e-50 203.4 196 61.2
MBI12_g14496_MAGBIO Magnolia biondii HOM05D007184 ORTHO05D008987 2.5e-47 193.0 161 67.1
ATR0073G001 Amborella trichopoda HOM05D007184 ORTHO05D008987 5.5e-47 191.8 141 72.3
QL08p013784 Quercus lobata HOM05D007184 ORTHO05D008987 7.1e-47 191.4 231 58.4
CDE05G0960 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 8.7e-45 184.5 214 51.9
CDE11G0483 Ceratophyllum demersum HOM05D007184 ORTHO05D008987 2.8e-43 179.5 150 66.0
Os01g0676200 Oryza sativa ssp. japonica HOM05D007184 ORTHO05D008987 6.3e-43 178.3 164 61.0
Zm00001eb156870 Zea mays HOM05D007184 ORTHO05D008987 2.4e-42 176.4 169 60.4
Eucgr.F03426 Eucalyptus grandis HOM05D007184 ORTHO05D008987 5.0e-40 168.7 118 74.6
DCAR_010017 Daucus carota HOM05D007184 ORTHO05D008987 3.0e-37 159.5 107 80.4
EL10Ac1g02068 Beta vulgaris HOM05D007184 ORTHO05D008987 3.7e-35 152.5 108 73.1
BcaB07g33555 Brassica carinata HOM05D007184 ORTHO05D008987 7.4e-28 128.3 105 66.7
QL08p060543 Quercus lobata HOM05D000807 ORTHO05D008987 6.3e-27 125.2 82 81.7
QL08p060183 Quercus lobata HOM05D000807 ORTHO05D008987 4.1e-26 122.5 82 80.5
Thhalv10012149m.g Eutrema salsugineum HOM05D007184 ORTHO05D008987 5.0e-24 115.5 81 72.8
Nn1g08505 Nelumbo nucifera HOM05D007184 ORTHO05D008987 5.5e-23 112.1 88 67.0
Potri.001G417350 Populus trichocarpa HOM05D007184 ORTHO05D008987 2.0e-20 103.6 73 72.6
SEGI_35792 Sequoiadendron giganteum HOM05D007184 ORTHO05D008987 1.1e-18 97.8 134 41.8
Sc03g0008930 Simmondsia chinensis HOM05D007184 ORTHO05D008987 2.2e-16 90.1 103 55.3
Lju3590C0T1 Lonicera japonica HOM05D007184 ORTHO05D008987 1.2e-14 84.3 58 75.9
Pp3c11_19690 Physcomitrium patens HOM05D007184 ORTHO05D008987 4.0e-13 79.3 111 38.7
FvH4_7g08050 Fragaria vesca HOM05D007184 ORTHO05D008987 1.2e-12 77.8 46 91.3
FAN01G2498 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.2e-12 77.8 46 91.3
CBR_g19283 Chara braunii HOM05D007184 ORTHO05D008987 1.0e-08 64.7 98 38.8
FAN06G0875 Fragaria x ananassa HOM05D007184 ORTHO05D008987 5.0e-08 62.4 35 94.3
Mapoly0032s0044 Marchantia polymorpha HOM05D007184 ORTHO05D008987 1.1e-07 61.2 107 40.2
FAN03G3196 Fragaria x ananassa HOM05D007184 ORTHO05D008987 1.2e-06 57.8 38 81.6


User provided reference genes

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