Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 4.8e-80 301.2 163 100.0
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.0e-65 252.7 162 85.8
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.4e-63 246.5 162 84.0
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.1e-63 245.0 162 83.3
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.3e-63 244.6 161 83.2
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.0e-42 177.2 107 87.9
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 1.1e-36 157.1 167 58.1
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 4.7e-35 151.8 158 59.5
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 9.1e-31 137.5 160 51.9
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 7.7e-30 134.4 160 55.0
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 2.9e-29 132.5 161 57.1
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.9e-28 129.8 156 49.4
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 3.3e-28 129.0 166 54.8
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 3.0e-26 122.5 158 55.1
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 5.2e-26 121.7 139 53.2
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 6.8e-26 121.3 156 48.7
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 8.9e-26 120.9 144 50.0
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.5e-25 120.2 147 49.0
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 2.6e-25 119.4 153 47.7
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 3.4e-25 119.0 149 48.3
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 1.7e-24 116.7 150 48.0
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 4.9e-24 115.2 153 48.4
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 1.1e-23 114.0 166 44.6
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 3.2e-23 112.5 138 50.7
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 3.2e-23 112.5 147 46.3
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 7.0e-23 111.3 148 47.3
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 2.0e-22 109.8 171 43.9
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 2.0e-22 109.8 161 43.5
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.0e-21 107.5 154 46.8
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 5.0e-21 105.1 119 52.9
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 8.6e-21 104.4 158 44.9
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 1.5e-20 103.6 156 42.9
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 1.5e-20 103.6 152 44.7
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 1.9e-20 103.2 158 43.7
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 1.9e-20 103.2 152 46.1
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 2.5e-20 102.8 144 43.8
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 3.3e-20 102.4 147 43.5
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 7.3e-20 101.3 152 44.1
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 9.5e-20 100.9 167 43.1
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.1e-19 99.8 151 45.0
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.8e-19 99.4 147 44.2
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 4.7e-19 98.6 157 45.2
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 6.1e-19 98.2 162 43.2
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.1e-19 98.2 157 44.6
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.0e-18 97.4 157 44.6
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.0e-18 97.4 157 44.6
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 1.8e-18 96.7 144 46.5
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.3e-18 96.3 149 40.9
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 2.3e-18 96.3 146 39.7
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 4.0e-18 95.5 164 43.3
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 5.2e-18 95.1 143 42.7
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 6.8e-18 94.7 147 44.9
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 6.8e-18 94.7 150 43.3
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.2e-17 94.0 144 45.1
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 1.5e-17 93.6 146 43.2
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 2.0e-17 93.2 106 50.9
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 2.0e-17 93.2 160 40.0
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.6e-17 92.8 149 40.3
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.4e-17 92.4 154 40.3
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 3.4e-17 92.4 155 43.9
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 4.4e-17 92.0 170 42.4
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 4.4e-17 92.0 162 39.5
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 5.8e-17 91.7 149 43.6
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 7.5e-17 91.3 151 39.7
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 9.8e-17 90.9 154 43.5
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 9.8e-17 90.9 154 43.5
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 9.8e-17 90.9 162 41.4
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 1.7e-16 90.1 173 39.3
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 1.7e-16 90.1 144 45.1
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.2e-16 89.7 140 46.4
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.2e-16 89.7 154 40.3
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 3.7e-16 89.0 143 40.6
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 4.9e-16 88.6 140 42.1
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 4.9e-16 88.6 158 41.8
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.3e-16 87.8 169 40.8
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 8.3e-16 87.8 146 37.0
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 1.4e-15 87.0 141 42.6
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 1.4e-15 87.0 141 42.6
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.4e-15 87.0 154 38.3
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.4e-15 87.0 154 38.3
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.4e-15 87.0 170 41.8
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.4e-15 87.0 152 41.4
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 1.9e-15 86.7 146 40.4
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 2.4e-15 86.3 170 40.0
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.4e-15 86.3 151 39.1
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 3.2e-15 85.9 142 43.7
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.2e-15 85.9 170 40.6
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 5.4e-15 85.1 140 42.9
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 5.4e-15 85.1 145 43.4
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 5.4e-15 85.1 159 39.0
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 7.0e-15 84.7 142 38.7
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 1.2e-14 84.0 154 40.3
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.2e-14 84.0 119 45.4
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 1.6e-14 83.6 139 43.2
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 1.6e-14 83.6 150 44.0
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 1.6e-14 83.6 153 39.2
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 2.7e-14 82.8 147 40.8
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 2.7e-14 82.8 152 39.5
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 3.5e-14 82.4 156 39.1
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 4.6e-14 82.0 151 42.4
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 6.0e-14 81.6 141 42.6
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 6.0e-14 81.6 141 42.6
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 1.3e-13 80.5 141 41.1
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 1.3e-13 80.5 155 38.1
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 1.3e-13 80.5 123 41.5
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 2.3e-13 79.7 160 40.0
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 3.0e-13 79.3 141 39.7
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 3.9e-13 79.0 142 43.0
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 3.9e-13 79.0 166 37.3
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 8.6e-13 77.8 141 42.6
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 8.6e-13 77.8 149 38.3
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 1.1e-12 77.4 147 37.4
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 1.5e-12 77.0 146 39.7
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 1.9e-12 76.6 99 43.4
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 3.3e-12 75.9 114 41.2
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 4.3e-12 75.5 141 39.0
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 4.3e-12 75.5 141 39.0
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 5.6e-12 75.1 139 41.7
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 7.3e-12 74.7 142 38.7
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 1.6e-11 73.6 167 36.5
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 2.1e-11 73.2 144 41.0
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 2.1e-11 73.2 144 41.0
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 2.1e-11 73.2 100 46.0
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 4.7e-11 72.0 137 36.5
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 6.2e-11 71.6 97 45.4
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 6.2e-11 71.6 140 38.6
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 8.0e-11 71.2 162 36.4
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 8.0e-11 71.2 116 42.2
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 1.1e-10 70.9 140 40.7
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 1.1e-10 70.9 140 40.7
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 1.8e-10 70.1 149 35.6
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 2.3e-10 69.7 109 40.4
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.2e-09 67.4 110 44.5
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 2.0e-09 66.6 142 38.0
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 3.4e-09 65.9 120 37.5
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 9.8e-09 64.3 86 47.7
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.9e-08 62.8 100 43.0
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 9.2e-07 57.8 68 52.9
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 9.2e-07 57.8 170 31.2
Nn3g21745 Nelumbo nucifera HOM05D001624 ORTHO05D001530 2.1e-06 56.6 152 34.9
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.7e-06 56.2 138 31.9
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 2.7e-06 56.2 137 32.1
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 2.7e-06 56.2 137 32.1
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 2.7e-06 56.2 168 30.4
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 7.8e-06 54.7 166 30.1
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 7.8e-06 54.7 182 29.7


User provided reference genes

Program Settings