Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 9.5e-147 523.5 261 100.0
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 9.5e-147 523.5 261 100.0
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 3.1e-145 518.5 261 98.9
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 3.1e-145 518.5 261 98.9
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.1e-145 518.5 261 98.9
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 3.0e-140 501.9 261 95.4
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.2e-138 496.5 260 94.6
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.6e-138 496.1 277 91.7
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.8e-138 495.4 261 93.9
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.1e-137 493.4 261 93.1
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 1.4e-137 493.0 261 93.5
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 2.3e-137 492.3 261 93.9
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 2.3e-137 492.3 261 93.9
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 2.3e-137 492.3 260 93.8
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 93.1
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 92.3
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 93.5
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 92.3
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 91.6
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.3
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 91.6
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.0
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 91.2
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.9e-135 485.3 260 92.3
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 92.0
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 91.6
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 91.6
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 92.0
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 92.0
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.2
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 8.3e-135 483.8 260 91.9
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 90.8
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 91.6
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 91.2
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 92.0
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 91.6
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 91.6
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 91.6
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 90.8
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 90.8
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 91.2
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 91.2
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 91.2
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 90.8
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 90.0
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 91.2
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 90.4
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 89.7
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.2e-133 479.9 265 89.4
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.0
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 2.7e-133 478.8 260 91.2
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.8
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.8
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.8
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 90.4
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 90.0
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 7.8e-133 477.2 258 91.1
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.0e-132 476.9 241 98.3
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 90.4
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.0e-132 475.3 241 97.9
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 90.4
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 6.6e-132 474.2 260 90.4
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.3
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 8.6e-132 473.8 259 91.1
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.3
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 88.5
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.5
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.9
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 88.9
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.1
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.1
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.5
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.5
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 88.9
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.1
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 7.3e-131 470.7 261 88.1
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.5
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 9.5e-131 470.3 261 88.5
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 88.5
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.6e-130 469.5 269 87.4
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.5
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 88.5
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.5
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 2.8e-130 468.8 256 89.5
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 88.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 88.9
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 87.4
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 88.1
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.3e-129 465.7 285 83.2
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.4
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 87.7
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 85.8
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 5.2e-129 464.5 264 87.5
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 85.8
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 88.5
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 85.1
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 86.6
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.8
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 84.7
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 86.6
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 86.6
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 86.6
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 86.2
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 86.2
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.4e-126 455.7 261 86.6
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 86.2
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 4.1e-126 454.9 261 86.6
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 85.4
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 86.2
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 82.8
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 2.7e-125 452.2 260 86.9
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 3.5e-125 451.8 260 85.4
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 3.5e-125 451.8 260 85.4
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.1
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 85.1
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 83.1
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 84.7
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.3e-124 449.9 240 92.5
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 3.0e-124 448.7 259 85.3
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 3.0e-124 448.7 259 85.3
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 6.6e-124 447.6 260 84.6
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 85.1
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 9.6e-123 443.7 261 84.3
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 2.8e-122 442.2 261 83.9
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 82.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.4e-121 439.9 261 83.1
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.1e-121 438.7 261 83.5
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 6.8e-121 437.6 261 83.9
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.2e-120 436.8 256 84.0
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.7e-119 433.0 337 69.7
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 6.0e-117 424.5 276 78.6
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 2.5e-115 419.1 261 75.9
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 78.2
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.4e-113 413.3 261 80.5
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 1.4e-113 413.3 261 79.3
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 1.4e-113 413.3 261 79.3
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 2.0e-112 409.5 261 77.8
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-111 406.4 261 79.7
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.2e-109 400.2 266 75.2
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 4.6e-109 398.3 213 90.6
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 7.9e-109 397.5 261 78.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 6.6e-108 394.4 222 87.8
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.4e-105 386.0 309 68.9
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 5.3e-105 384.8 201 92.5
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 9.0e-105 384.0 254 77.2
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 3.4e-104 382.1 240 80.0
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 8.1e-98 360.9 200 88.5
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.4e-97 360.1 195 87.7
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-95 353.6 177 97.2
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 1.4e-94 350.1 257 73.9
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 6.9e-89 331.3 260 62.3
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 1.4e-81 307.0 160 90.6
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 1.2e-72 277.3 229 62.0
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 7.4e-67 258.1 240 60.0
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.7e-58 230.3 135 86.7
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.3e-58 228.4 113 94.7
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 5.9e-56 221.9 143 79.7
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 2.2e-55 219.9 142 78.9
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.5e-51 207.2 271 52.0
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.7e-48 196.4 98 92.9
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 9.8e-43 177.9 108 83.3
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 3.7e-42 176.0 140 67.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 1.2e-40 171.0 196 51.0
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.2e-37 161.0 135 63.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.6e-37 160.6 92 85.9
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 5.7e-35 152.1 195 47.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 8.3e-34 148.3 100 78.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 5.2e-28 129.0 81 79.0
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.2e-27 127.9 92 70.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.7e-23 114.0 111 58.6
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 2.3e-20 103.6 64 81.2
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 3.7e-18 96.3 81 66.7
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.2e-10 70.5 56 67.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 8.4e-10 68.6 59 61.0
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 7.1e-09 65.5 62 61.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 3.5e-08 63.2 44 75.0
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.0e-07 61.6 35 80.0
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.0e-07 60.1 52 63.5
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 4.3e-06 56.2 38 65.8
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 9.6e-06 55.1 34 73.5


User provided reference genes

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