Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0409411 Rosa chinensis HOM05D006838 ORTHO05D008915 4.6e-76 287.7 137 100.0
FAN22G1840 Fragaria x ananassa HOM05D006838 ORTHO05D008915 1.1e-58 229.9 135 78.5
FvH4_1g03680 Fragaria vesca HOM05D006838 ORTHO05D008915 1.3e-57 226.5 135 77.0
FAN19G3212 Fragaria x ananassa HOM05D006838 ORTHO05D008915 2.8e-57 225.3 136 77.2
FAN17G0416 Fragaria x ananassa HOM05D006838 ORTHO05D001690 2.3e-43 179.1 128 68.8
RcHm_v2.0_Chr4g0416051 Rosa chinensis HOM05D006838 ORTHO05D008915 1.1e-42 176.8 137 65.0
FvH4_4g16340 Fragaria vesca HOM05D006838 ORTHO05D008915 5.7e-42 174.5 138 63.8
FAN12G2261 Fragaria x ananassa HOM05D006838 ORTHO05D008915 5.7e-42 174.5 138 63.8
MD13G1194100 Malus domestica HOM05D006838 ORTHO05D008915 3.1e-40 168.7 137 59.9
Haze_00889 Corylus avellana HOM05D000001 ORTHO05D000003 3.4e-39 165.2 138 59.4
TWI73G0194 Tripterygium wilfordii HOM05D006838 ORTHO05D008915 4.5e-39 164.9 135 59.3
Cfa015659 Carpinus fangiana HOM05D006838 ORTHO05D008915 3.8e-38 161.8 138 58.0
Prupe.1G014900 Prunus persica HOM05D006838 ORTHO05D008915 7.2e-37 157.5 138 59.4
CANSAT78G0040 Cannabis sativa HOM05D006838 ORTHO05D008915 9.4e-37 157.1 129 60.5
Gohir.D01G021700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 9.4e-37 157.1 135 55.6
Gorai.002G024200 Gossypium raimondii HOM05D006838 ORTHO05D008915 9.4e-37 157.1 135 55.6
Medtr5g006360 Medicago truncatula HOM05D006838 ORTHO05D008915 1.6e-36 156.4 134 59.0
QL06p002133 Quercus lobata HOM05D006838 ORTHO05D008915 1.6e-36 156.4 138 58.0
Manes.03G177700 Manihot esculenta HOM05D006838 ORTHO05D008915 2.7e-36 155.6 135 55.6
Atru.chr4.2454 Acer truncatum HOM05D006838 ORTHO05D008915 7.9e-36 154.1 129 56.6
TPR.G37905 Trifolium pratense HOM05D006838 ORTHO05D008915 1.0e-35 153.7 138 56.5
Cpa.g.sc58.98 Carica papaya HOM05D006838 ORTHO05D008915 1.8e-35 152.9 135 54.1
CARHR125890 Cardamine hirsuta HOM05D006838 ORTHO05D008915 3.0e-35 152.1 129 55.0
Gohir.A01G023700 Gossypium hirsutum HOM05D006838 ORTHO05D008915 3.0e-35 152.1 134 54.5
Sed0026467 Sechium edule HOM05D006838 ORTHO05D008915 8.8e-35 150.6 140 55.7
Thhalv10017983m.g Eutrema salsugineum HOM05D006838 ORTHO05D008915 2.0e-34 149.4 129 55.0
Duzib052G0907 Durio zibethinus HOM05D006838 ORTHO05D008915 2.6e-34 149.1 135 52.6
Sp4g14500 Schrenkiella parvula HOM05D006838 ORTHO05D008915 3.3e-34 148.7 129 55.0
CsaV3_7G022460 Cucumis sativus L. HOM05D006838 ORTHO05D008915 5.7e-34 147.9 140 55.7
Eucgr.H03460 Eucalyptus grandis HOM05D006838 ORTHO05D008915 5.7e-34 147.9 129 58.1
Psat4g210280 Pisum sativum HOM05D006838 ORTHO05D008915 5.7e-34 147.9 131 55.7
CiPaw.01G167000 Carya illinoinensis HOM05D006838 ORTHO05D008915 7.4e-34 147.5 138 58.0
Hund12124 Selenicereus undatus HOM05D006838 ORTHO05D008915 7.4e-34 147.5 130 56.2
Thecc.04G232900 Theobroma cacao HOM05D006838 ORTHO05D008915 7.4e-34 147.5 135 54.8
Cc03_g03870 Coffea canephora HOM05D006838 ORTHO05D008915 9.7e-34 147.1 138 55.8
arahy.Tifrunner.gnm1.ann1.00V3DL Arachis hypogaea HOM05D006838 ORTHO05D008915 1.3e-33 146.7 131 56.5
BolC4t23300H Brassica oleracea HOM05D006838 ORTHO05D008915 1.3e-33 146.7 129 55.0
Eucgr.H03458 Eucalyptus grandis HOM05D006838 ORTHO05D008915 1.3e-33 146.7 129 58.1
Aa31LG5G4930 Aethionema arabicum HOM05D006838 ORTHO05D008915 1.7e-33 146.4 135 50.4
C04p17530 Brassica napus HOM05D006838 ORTHO05D008915 1.7e-33 146.4 129 54.3
LjContig00408g0014048 Lotus japonicus HOM05D006838 ORTHO05D008915 1.7e-33 146.4 131 54.2
THA.LOC104816050 Tarenaya hassleriana HOM05D006838 ORTHO05D008915 1.7e-33 146.4 136 54.4
AL103U10040 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 2.8e-33 145.6 129 53.5
AL4G27470 Arabidopsis lyrata HOM05D006838 ORTHO05D008915 2.8e-33 145.6 129 53.5
A05p13410 Brassica napus HOM05D006838 ORTHO05D008915 2.8e-33 145.6 129 54.3
arahy.Tifrunner.gnm1.ann1.08EL86 Arachis hypogaea HOM05D006838 ORTHO05D008915 3.7e-33 145.2 131 55.0
AT2G32090 Arabidopsis thaliana HOM05D006838 ORTHO05D008915 4.8e-33 144.8 129 52.7
BraA05t20279Z Brassica rapa HOM05D006838 ORTHO05D008915 6.3e-33 144.4 129 54.3
BcaB02g10450 Brassica carinata HOM05D006838 ORTHO05D008915 1.1e-32 143.7 130 53.8
Nitab4.5_0000316g0010 Nicotiana tabacum HOM05D006838 ORTHO05D008915 1.4e-32 143.3 129 58.1
CAN.G1094.4 Capsicum annuum HOM05D006838 ORTHO05D008915 2.4e-32 142.5 128 55.5
TAR365G1174 Trochodendron aralioides HOM05D006838 ORTHO05D008915 2.4e-32 142.5 130 54.6
FAN17G0591 Fragaria x ananassa HOM05D006838 ORTHO05D008915 3.1e-32 142.1 107 63.6
Nitab4.5_0001342g0050 Nicotiana tabacum HOM05D006838 ORTHO05D008915 4.1e-32 141.7 129 56.6
Sabra08G0117200 Salix brachista HOM05D006838 ORTHO05D008915 7.0e-32 141.0 128 56.2
Ca_24400_v3 Cicer arietinum L. HOM05D006838 ORTHO05D008915 9.1e-32 140.6 131 55.7
Carub.0004s1344 Capsella rubella HOM05D006838 ORTHO05D008915 1.2e-31 140.2 129 51.2
PGR004G0798 Punica granatum HOM05D006838 ORTHO05D008915 1.5e-31 139.8 130 56.2
EL10Ac3g06416 Beta vulgaris HOM05D006838 ORTHO05D008915 2.0e-31 139.4 130 52.3
CSS0050318 Camellia sinensis var. sinensis HOM05D006838 ORTHO05D008915 2.6e-31 139.0 137 54.7
AUR62033621 Chenopodium quinoa HOM05D006838 ORTHO05D008915 2.6e-31 139.0 135 50.4
AUR62038604 Chenopodium quinoa HOM05D006838 ORTHO05D008915 2.6e-31 139.0 135 51.1
FvH4_4g16350 Fragaria vesca HOM05D006838 ORTHO05D046149 2.6e-31 139.0 146 52.1
Lsat_1_v5_gn_5_35600 Lactuca sativa HOM05D006838 ORTHO05D008915 5.9e-31 137.9 128 56.2
Ah.13g072770 Amaranthus hybridus HOM05D006838 ORTHO05D008915 7.7e-31 137.5 132 55.3
MELO3C012654.2 Cucumis melo HOM05D006838 ORTHO05D008915 1.3e-30 136.7 166 48.2
Potri.010G087000 Populus trichocarpa HOM05D006838 ORTHO05D008915 1.3e-30 136.7 135 48.9
Actinidia08489 Actinidia chinensis HOM05D006838 ORTHO05D008915 1.7e-30 136.3 127 55.1
Dinv13999 Davidia involucrata HOM05D006838 ORTHO05D008915 1.7e-30 136.3 128 55.5
Peaxi162Scf00092g00717 Petunia axillaris HOM05D006838 ORTHO05D008915 1.7e-30 136.3 129 55.0
SGA_v2.0_scaffold39G15215 Striga asiatica HOM05D006838 ORTHO05D008915 2.9e-30 135.6 137 54.7
Sc13g0004470 Simmondsia chinensis HOM05D006838 ORTHO05D008915 5.0e-30 134.8 130 51.5
Ciclev10006131m.g Citrus clementina HOM05D006838 ORTHO05D008915 6.5e-30 134.4 99 59.6
Migut.G00344 Erythranthe guttata HOM05D006838 ORTHO05D008915 6.5e-30 134.4 129 51.9
Nn4g26336 Nelumbo nucifera HOM05D006838 ORTHO05D008915 6.5e-30 134.4 129 51.2
PGSC0003DMG400032255 Solanum tuberosum HOM05D006838 ORTHO05D008915 1.1e-29 133.7 128 52.3
PSO832G4526 Papaver somniferum HOM05D006838 ORTHO05D008915 1.4e-29 133.3 132 48.5
PSO210G6947 Papaver somniferum HOM05D006838 ORTHO05D008915 3.2e-29 132.1 132 47.7
Solyc09g082115.1 Solanum lycopersicum HOM05D006838 ORTHO05D008915 3.2e-29 132.1 128 50.0
DCAR_030640 Daucus carota HOM05D006838 ORTHO05D008915 4.2e-29 131.7 137 52.6
unitig_32.g11729 Utricularia gibba HOM05D006838 ORTHO05D008915 4.2e-29 131.7 135 51.9
Sopen09g031000 Solanum pennellii HOM05D006838 ORTHO05D008915 5.5e-29 131.3 128 49.2
MSTRG.4035 Avicennia marina HOM05D006838 ORTHO05D008915 9.4e-29 130.6 128 51.6
RcHm_v2.0_Chr4g0416061 Rosa chinensis HOM05D006838 ORTHO05D008915 1.2e-28 130.2 95 70.5
Aqoxy5G00461 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 2.3e-27 125.9 132 48.5
ECA246G0107 Erigeron canadensis HOM05D006838 ORTHO05D008915 2.3e-27 125.9 140 47.1
CDE05G3614 Ceratophyllum demersum HOM05D006838 ORTHO05D008915 3.0e-27 125.6 156 44.2
SalBow2G1460 Salvia bowleyana HOM05D001359 ORTHO05D001200 3.9e-27 125.2 138 47.1
Medtr5g006370 Medicago truncatula HOM05D006838 ORTHO05D008915 2.6e-26 122.5 130 50.0
MBI12_g03925_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 4.4e-26 121.7 140 44.3
HanXRQChr10g0288871 Helianthus annuus HOM05D006838 ORTHO05D008915 7.4e-26 120.9 138 49.3
TPR.G38007 Trifolium pratense HOM05D006838 ORTHO05D008915 1.3e-25 120.2 143 43.4
COL.COLO4_21487 Corchorus olitorius HOM05D006838 ORTHO05D000003 1.7e-25 119.8 109 55.0
Dinv44539 Davidia involucrata HOM05D006838 ORTHO05D008915 2.2e-25 119.4 104 53.8
GSVIVG01017987001 Vitis vinifera HOM05D006838 ORTHO05D008915 2.2e-25 119.4 119 49.6
Actinidia36957 Actinidia chinensis HOM05D006838 ORTHO05D008915 2.8e-25 119.0 128 50.8
TPR.G14291 Trifolium pratense HOM05D006838 ORTHO05D008915 3.7e-25 118.6 143 44.8
Lsat_1_v5_gn_5_35680 Lactuca sativa HOM05D006838 ORTHO05D008915 1.1e-24 117.1 126 50.0
FAN12G2595 Fragaria x ananassa HOM05D006838 ORTHO05D046149 1.4e-24 116.7 86 67.4
Rhsim02G0025700 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.0e-24 114.4 97 56.7
SalBow2G1378 Salvia bowleyana HOM05D006838 ORTHO05D008915 9.1e-24 114.0 158 41.1
Os03g0659300 Oryza sativa ssp. japonica HOM05D006838 ORTHO05D008915 2.6e-23 112.5 133 41.4
SHI00446 Sapria himalayana HOM05D006838 ORTHO05D008915 3.5e-23 112.1 99 51.5
vmacro15346 Vaccinium macrocarpon HOM05D006838 ORTHO05D008915 5.0e-22 108.2 97 54.6
Zm00001eb052640 Zea mays HOM05D006838 ORTHO05D008915 5.0e-22 108.2 133 40.6
AagrBONN_evm.TU.Sc2ySwM_362.295 Anthoceros agrestis HOM05D006838 ORTHO05D008915 2.5e-21 105.9 136 36.0
MBI11_g31275_MAGBIO Magnolia biondii HOM05D006838 ORTHO05D008915 4.2e-21 105.1 111 44.1
MBI11_g31274_MAGBIO Magnolia biondii HOM05D002513 ORTHO05D002720 7.2e-21 104.4 107 46.7
SEGI_21646 Sequoiadendron giganteum HOM05D006838 ORTHO05D008915 7.2e-21 104.4 132 41.7
SMO304G0126 Selaginella moellendorffii HOM05D006838 ORTHO05D008915 1.6e-20 103.2 135 37.8
Aqoxy6G02670 Aquilegia oxysepala HOM05D006838 ORTHO05D008915 1.8e-19 99.8 136 40.4
Mapoly0185s0021 Marchantia polymorpha HOM05D006838 ORTHO05D008915 2.6e-18 95.9 131 36.6
AagrBONN_evm.TU.Sc2ySwM_362.293 Anthoceros agrestis HOM05D000001 ORTHO05D000003 3.4e-18 95.5 136 33.8
Pp3c10_20820 Physcomitrium patens HOM05D006838 ORTHO05D008915 3.4e-18 95.5 132 37.1
ATR0697G082 Amborella trichopoda HOM05D006838 ORTHO05D008915 1.8e-16 89.7 95 41.1
Potri.008G153602 Populus trichocarpa HOM05D006838 ORTHO05D008915 1.6e-15 86.7 85 52.9
Aqoxy4G00384 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 9.4e-13 77.4 58 55.2
RcHm_v2.0_Chr4g0432191 Rosa chinensis HOM05D006838 ORTHO05D008915 2.3e-11 72.8 55 63.6
Potri.009G055500 Populus trichocarpa HOM05D000986 ORTHO05D000794 3.0e-11 72.4 131 29.8
FAN06G1695 Fragaria x ananassa HOM05D000986 ORTHO05D000794 5.7e-10 68.2 128 30.5
FAN10G0340 Fragaria x ananassa HOM05D000986 ORTHO05D000794 9.8e-10 67.4 128 30.5
Atru.chr11.2542 Acer truncatum HOM05D000986 ORTHO05D000794 1.3e-09 67.0 128 30.5
CiPaw.14G003900 Carya illinoinensis HOM05D000986 ORTHO05D000794 1.3e-09 67.0 128 28.9
FvH4_7g01840 Fragaria vesca HOM05D000986 ORTHO05D000794 1.3e-09 67.0 128 30.5
Aqoxy2G00216 Aquilegia oxysepala HOM05D000986 ORTHO05D000794 1.7e-09 66.6 128 30.5
FAN03G1256 Fragaria x ananassa HOM05D000986 ORTHO05D000794 2.2e-09 66.2 130 30.8
TWI09G1595 Tripterygium wilfordii HOM05D000986 ORTHO05D000794 3.7e-09 65.5 129 28.7
PGR142G1246 Punica granatum HOM05D000986 ORTHO05D000794 8.3e-09 64.3 128 30.5
Nn7g36347 Nelumbo nucifera HOM05D000986 ORTHO05D000794 1.1e-08 63.9 128 28.9
ECA234G2712 Erigeron canadensis HOM05D000986 ORTHO05D000794 7.0e-08 61.2 128 28.1
Hma1.2p1_0266F.1_g106920 Hydrangea macrophylla HOM05D000986 ORTHO05D000794 1.2e-07 60.5 128 30.5
Sabra10G0056600 Salix brachista HOM05D006838 ORTHO05D008915 1.6e-07 60.1 127 35.4
Phvul.002G111300 Phaseolus vulgaris HOM05D000986 ORTHO05D000794 2.0e-07 59.7 128 29.7
VMungo1215G1040 Vigna mungo HOM05D000986 ORTHO05D000794 2.7e-07 59.3 128 28.9
Ca_24901_v3 Cicer arietinum L. HOM05D000986 ORTHO05D000794 3.5e-07 58.9 128 28.9
PSO541G2049 Papaver somniferum HOM05D000986 ORTHO05D000794 3.5e-07 58.9 128 28.9
Nn6g32251 Nelumbo nucifera HOM05D000986 ORTHO05D000794 4.5e-07 58.5 128 29.7
Peaxi162Scf00010g00512 Petunia axillaris HOM05D000986 ORTHO05D000794 4.5e-07 58.5 128 30.5
GSVIVG01023260001 Vitis vinifera HOM05D000986 ORTHO05D000794 4.5e-07 58.5 128 28.9
Glyma.11G075000 Glycine max HOM05D000986 ORTHO05D000794 7.7e-07 57.8 128 28.1
Psat2g155800 Pisum sativum HOM05D000986 ORTHO05D000794 7.7e-07 57.8 128 28.1
CiPaw.08G135000 Carya illinoinensis HOM05D000986 ORTHO05D000794 1.0e-06 57.4 128 29.7
Nn6g32248 Nelumbo nucifera HOM05D000986 ORTHO05D000794 1.0e-06 57.4 129 28.7
Nitab4.5_0012096g0010 Nicotiana tabacum HOM05D000986 ORTHO05D000794 1.0e-06 57.4 128 29.7
TAR376G1094 Trochodendron aralioides HOM05D000986 ORTHO05D000794 1.0e-06 57.4 128 28.9
HPP92_017391 Vanilla planifolia HOM05D006838 ORTHO05D008915 1.0e-06 57.4 54 44.4
Nitab4.5_0012660g0020 Nicotiana tabacum HOM05D000986 ORTHO05D000794 1.7e-06 56.6 128 29.7
TPR.G2382 Trifolium pratense HOM05D000986 ORTHO05D000794 1.7e-06 56.6 128 28.1
Actinidia15788 Actinidia chinensis HOM05D000986 ORTHO05D000794 2.9e-06 55.8 127 27.6
Hma1.2p1_0042F.1_g025480 Hydrangea macrophylla HOM05D000986 ORTHO05D000794 3.8e-06 55.5 127 29.1
THA.LOC104818034 Tarenaya hassleriana HOM05D000986 ORTHO05D000794 3.8e-06 55.5 128 25.8
TWI73G0648 Tripterygium wilfordii HOM05D000986 ORTHO05D000794 6.6e-06 54.7 129 31.0


User provided reference genes

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