Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0409331 Rosa chinensis HOM05D004666 ORTHO05D005822 0.0e+00 2140.2 1111 100.0
FvH4_6g18260 Fragaria vesca HOM05D004666 ORTHO05D005822 0.0e+00 1648.3 1117 79.2
FAN06G2408 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1518.8 1099 78.1
FAN03G3209 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1507.7 1152 74.7
FvH4_7g02500 Fragaria vesca HOM05D004666 ORTHO05D005822 0.0e+00 1505.7 1137 73.9
FAN02G3237 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1277.3 893 77.4
RcHm_v2.0_Chr3g0472691 Rosa chinensis HOM05D004666 ORTHO05D005822 0.0e+00 1223.4 618 96.3
FAN05G5602 Fragaria x ananassa HOM05D004666 ORTHO05D005822 0.0e+00 1185.2 907 73.0
Prupe.7G114200 Prunus persica HOM05D004666 ORTHO05D005822 1.4e-295 1020.0 1238 52.6
MD09G1081300 Malus domestica HOM05D004666 ORTHO05D005822 5.2e-287 991.5 1145 54.6
MD12G1022600 Malus domestica HOM05D004666 ORTHO05D005822 1.3e-264 917.1 1077 50.5
COL.COLO4_15658 Corchorus olitorius HOM05D004666 ORTHO05D005822 1.2e-254 884.0 1087 46.7
Cfa002067 Carpinus fangiana HOM05D004666 ORTHO05D005822 1.3e-248 864.0 1137 46.0
QL07p039593 Quercus lobata HOM05D004666 ORTHO05D005822 2.5e-244 849.7 1135 46.7
Dinv21227 Davidia involucrata HOM05D004666 ORTHO05D005822 3.6e-243 845.9 1142 44.0
CiPaw.09G011000 Carya illinoinensis HOM05D004666 ORTHO05D005822 8.2e-240 834.7 1141 43.9
FAN05G4874 Fragaria x ananassa HOM05D004666 ORTHO05D005822 4.8e-232 808.9 1103 49.1
Manes.13G012000 Manihot esculenta HOM05D004666 ORTHO05D005822 5.0e-229 798.9 1078 46.4
Potri.008G200900 Populus trichocarpa HOM05D004666 ORTHO05D005822 4.2e-228 795.8 1082 46.4
Thecc.01G223300 Theobroma cacao HOM05D004666 ORTHO05D005822 3.3e-225 786.2 1090 45.8
TAR365G1212 Trochodendron aralioides HOM05D004666 ORTHO05D005822 1.3e-224 784.3 1051 43.2
Lalb_Chr02g0155381 Lupinus albus HOM05D004666 ORTHO05D005822 2.2e-224 783.5 1115 43.0
Gorai.001G233200 Gossypium raimondii HOM05D004666 ORTHO05D005822 5.9e-222 775.4 1076 42.6
Gohir.A07G200500 Gossypium hirsutum HOM05D004666 ORTHO05D005822 1.7e-221 773.9 1083 44.0
Rhsim05G0022800 Rhododendron simsii HOM05D004666 ORTHO05D005822 2.7e-219 766.5 1120 43.1
Lj2C133G10 Lonicera japonica HOM05D004666 ORTHO05D005822 2.0e-217 760.4 1092 42.5
CANSAT54G2995 Cannabis sativa HOM05D004666 ORTHO05D005822 1.4e-215 754.2 1075 41.3
Gohir.D07G206800 Gossypium hirsutum HOM05D004666 ORTHO05D005822 2.4e-215 753.4 1075 42.4
GSVIVG01032069001 Vitis vinifera HOM05D004666 ORTHO05D005822 6.1e-211 738.8 1061 42.3
EL10Ac7g16949 Beta vulgaris HOM05D004666 ORTHO05D005822 5.2e-210 735.7 1067 41.5
TWI34G1071 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 1.2e-209 734.6 1057 43.7
Cc06_g05530 Coffea canephora HOM05D004666 ORTHO05D005822 1.1e-207 728.0 1036 44.8
Glyma.10G068100 Glycine max HOM05D004666 ORTHO05D005822 7.0e-207 725.3 1131 43.8
MELO3C009457.2 Cucumis melo HOM05D004666 ORTHO05D005822 1.2e-206 724.5 1066 40.8
Aqoxy3G00997 Aquilegia oxysepala HOM05D004666 ORTHO05D005822 2.7e-206 723.4 1081 42.0
Phvul.011G176600 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 5.0e-205 719.2 1134 42.9
Sed0022470 Sechium edule HOM05D004666 ORTHO05D005822 6.5e-205 718.8 1072 39.7
Atru.chr8.1588 Acer truncatum HOM05D004666 ORTHO05D005822 4.2e-204 716.1 881 47.2
CsaV3_3G037120 Cucumis sativus L. HOM05D004666 ORTHO05D005822 1.2e-201 708.0 1080 39.5
Oeu040521.1 Olea europaea HOM05D004666 ORTHO05D005822 1.2e-201 708.0 1036 42.2
vmacro17219 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 1.5e-201 707.6 1263 37.2
PSO384G1605 Papaver somniferum HOM05D004666 ORTHO05D005822 3.7e-200 703.0 1106 41.5
Hund26220 Selenicereus undatus HOM05D004666 ORTHO05D005822 4.5e-198 696.0 1132 39.0
DCAR_013376 Daucus carota HOM05D004666 ORTHO05D005822 2.9e-197 693.3 1049 41.4
vmacro22687 Vaccinium macrocarpon HOM05D004666 ORTHO05D005822 3.8e-197 693.0 1271 36.2
Phvul.007G229800 Phaseolus vulgaris HOM05D004666 ORTHO05D005822 6.6e-197 692.2 1134 42.8
Lj5g0013478 Lotus japonicus HOM05D004666 ORTHO05D005822 2.5e-196 690.3 1123 39.4
Medtr1g060580 Medicago truncatula HOM05D004666 ORTHO05D005822 2.5e-196 690.3 1088 39.8
Ca_26672_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.0e-195 685.3 1087 40.2
Ca_30723_v3 Cicer arietinum L. HOM05D004666 ORTHO05D005822 8.0e-195 685.3 1087 40.2
ClCG10G019140 Citrullus lanatus HOM05D004666 ORTHO05D005822 2.3e-194 683.7 1070 40.2
PSO425G0050 Papaver somniferum HOM05D004666 ORTHO05D005822 1.5e-193 681.0 1111 40.3
Sp1g17360 Schrenkiella parvula HOM05D004666 ORTHO05D005822 4.4e-193 679.5 1042 40.7
AUR62033523 Chenopodium quinoa HOM05D004666 ORTHO05D005822 1.7e-192 677.6 1120 37.7
Nitab4.5_0000794g0050 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.2e-192 677.2 1063 40.7
VMungo0720G2175 Vigna mungo HOM05D004666 ORTHO05D005822 3.7e-192 676.4 1182 40.7
TPR.G35431 Trifolium pratense HOM05D004666 ORTHO05D005822 1.1e-191 674.9 1103 39.1
BolC8t49572H Brassica oleracea HOM05D004666 ORTHO05D005822 9.2e-191 671.8 1068 40.4
arahy.Tifrunner.gnm1.ann1.G8H5C8 Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-190 671.4 1109 38.5
arahy.Tifrunner.gnm1.ann1.T4KAXF Arachis hypogaea HOM05D004666 ORTHO05D005822 1.2e-190 671.4 1108 38.4
A08p29790 Brassica napus HOM05D004666 ORTHO05D005822 1.3e-189 667.9 1068 39.8
C08p19490 Brassica napus HOM05D004666 ORTHO05D005822 3.9e-189 666.4 1072 39.7
Thhalv10006802m.g Eutrema salsugineum HOM05D004666 ORTHO05D005822 3.9e-189 666.4 1070 38.7
C05p17890 Brassica napus HOM05D004666 ORTHO05D005822 5.0e-189 666.0 1049 39.4
Ciclev10011197m.g Citrus clementina HOM05D004666 ORTHO05D005822 1.9e-188 664.1 843 46.5
arahy.Tifrunner.gnm1.ann1.WFL2XE Arachis hypogaea HOM05D004666 ORTHO05D005822 3.3e-188 663.3 1087 38.6
BraA08t34913Z Brassica rapa HOM05D004666 ORTHO05D005822 7.3e-188 662.1 1067 39.6
THA.LOC104827512 Tarenaya hassleriana HOM05D004666 ORTHO05D005822 7.3e-188 662.1 1066 40.0
CARHR020050 Cardamine hirsuta HOM05D004666 ORTHO05D005822 1.2e-187 661.4 1045 38.9
ECA248G3102 Erigeron canadensis HOM05D004666 ORTHO05D005822 1.2e-187 661.4 1122 40.9
A06p15660 Brassica napus HOM05D004666 ORTHO05D005822 4.7e-187 659.4 1055 38.8
BraA06t24675Z Brassica rapa HOM05D004666 ORTHO05D005822 4.7e-187 659.4 1055 38.8
BolC5t30496H Brassica oleracea HOM05D004666 ORTHO05D005822 3.1e-186 656.8 1057 39.1
Carub.0001s1905 Capsella rubella HOM05D004666 ORTHO05D005822 4.0e-186 656.4 1046 39.6
Psat6g082920 Pisum sativum HOM05D004666 ORTHO05D005822 3.4e-185 653.3 1073 38.6
BcaB03g12912 Brassica carinata HOM05D004666 ORTHO05D005822 4.4e-185 652.9 1061 38.5
Ah.08g210700 Amaranthus hybridus HOM05D004666 ORTHO05D005822 2.9e-184 650.2 1117 37.1
PGR142G0825 Punica granatum HOM05D004666 ORTHO05D005822 1.1e-183 648.3 1080 39.3
Sed0014063 Sechium edule HOM05D004666 ORTHO05D005822 4.1e-183 646.4 1071 40.4
TWI73G1120 Tripterygium wilfordii HOM05D004666 ORTHO05D005822 4.1e-183 646.4 1061 38.8
AT1G19485 Arabidopsis thaliana HOM05D004666 ORTHO05D005822 1.6e-182 644.4 1060 38.4
Sopen09g004490 Solanum pennellii HOM05D004666 ORTHO05D005822 2.5e-180 637.1 1109 37.8
Aa31LG7G4140 Aethionema arabicum HOM05D004666 ORTHO05D005822 5.6e-180 636.0 1054 38.3
Solyc09g009710.4 Solanum lycopersicum HOM05D004666 ORTHO05D005822 2.8e-179 633.6 1109 37.8
Sc02g0001000 Simmondsia chinensis HOM05D004666 ORTHO05D005822 1.9e-175 620.9 1046 41.6
ECA248G2596 Erigeron canadensis HOM05D004666 ORTHO05D005822 5.4e-175 619.4 1110 41.1
HanXRQChr01g0029141 Helianthus annuus HOM05D004666 ORTHO05D005822 1.2e-174 618.2 1049 38.1
arahy.Tifrunner.gnm1.ann1.LSN657 Arachis hypogaea HOM05D004666 ORTHO05D005822 6.2e-171 605.9 1093 36.7
Nitab4.5_0009916g0020 Nicotiana tabacum HOM05D004666 ORTHO05D005822 2.4e-170 604.0 1064 39.2
Haze_19573 Corylus avellana HOM05D004666 ORTHO05D005822 1.5e-169 601.3 775 46.3
Lsat_1_v5_gn_1_48480 Lactuca sativa HOM05D004666 ORTHO05D005822 1.7e-168 597.8 1044 35.9
Lj5g0018797 Lotus japonicus HOM05D004666 ORTHO05D005822 1.7e-168 597.8 1103 36.6
AL1G32230 Arabidopsis lyrata HOM05D004666 ORTHO05D005822 1.4e-167 594.7 942 39.8
Migut.J00966 Erythranthe guttata HOM05D004666 ORTHO05D005822 1.8e-162 577.8 1041 35.2
Peaxi162Scf00015g00639 Petunia axillaris HOM05D004666 ORTHO05D005822 1.2e-158 565.1 1059 36.4
FAN10G4251 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-157 561.2 558 66.7
RcHm_v2.0_Chr3g0472701 Rosa chinensis HOM05D004666 ORTHO05D005822 1.5e-156 558.1 359 91.9
MBI17_g35786_MAGBIO Magnolia biondii HOM05D004666 ORTHO05D005822 5.6e-156 556.2 1063 35.6
HPP92_015079 Vanilla planifolia HOM05D004666 ORTHO05D005822 8.1e-155 552.4 1199 32.0
SGA_v2.0_scaffold147G36363 Striga asiatica HOM05D004666 ORTHO05D005822 3.2e-151 540.4 1032 35.3
SalBow3G3865 Salvia bowleyana HOM05D004666 ORTHO05D005822 3.3e-148 530.4 1074 33.2
Duzib114G0569 Durio zibethinus HOM05D004666 ORTHO05D005822 4.3e-148 530.0 1070 35.9
Nn2g14084 Nelumbo nucifera HOM05D004666 ORTHO05D005822 5.6e-148 529.6 810 38.6
Potri.006G036601 Populus trichocarpa HOM05D004666 ORTHO05D005822 6.0e-142 509.6 683 44.5
Sabra08G0160300 Salix brachista HOM05D004666 ORTHO05D005822 2.7e-134 484.2 736 43.8
Peaxi162Scf00036g00125 Petunia axillaris HOM05D004666 ORTHO05D005822 1.6e-131 474.9 1085 33.4
Sabra12G0045300 Salix brachista HOM05D004666 ORTHO05D005822 8.2e-131 472.6 773 41.9
AUR62028568 Chenopodium quinoa HOM05D004666 ORTHO05D005822 7.7e-129 466.1 828 38.6
Zm00001eb147330 Zea mays HOM05D004666 ORTHO05D005822 1.0e-128 465.7 1448 27.8
CDE08G1659 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 3.8e-120 437.2 1043 29.1
unitig_749.g14294 Utricularia gibba HOM05D004666 ORTHO05D005822 3.2e-119 434.1 1042 30.6
Eucgr.K02035 Eucalyptus grandis HOM05D004666 ORTHO05D005822 4.2e-119 433.7 307 63.8
FAN09G1276 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.7e-115 421.8 282 76.2
Os01g0858000 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 5.3e-106 390.2 642 38.3
FAN14G5421 Fragaria x ananassa HOM05D004666 ORTHO05D005822 1.0e-96 359.4 235 78.7
Mapoly0021s0027 Marchantia polymorpha HOM05D004666 ORTHO05D005822 8.8e-93 346.3 498 39.2
Cpa.g.sc5.49 Carica papaya HOM05D004666 ORTHO05D005822 1.3e-91 342.4 354 52.8
Pp3c1_31470 Physcomitrium patens HOM05D004666 ORTHO05D005822 8.3e-91 339.7 500 36.8
AagrBONN_evm.TU.Sc2ySwM_344.3422 Anthoceros agrestis HOM05D004666 ORTHO05D005822 3.3e-87 327.8 519 37.4
Hma1.2p1_2087F.1_g313760 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 1.4e-77 295.8 326 51.2
PGSC0003DMG400008959 Solanum tuberosum HOM05D004666 ORTHO05D005822 8.0e-70 270.0 668 31.9
Haze_16425 Corylus avellana HOM05D004666 ORTHO05D005822 3.7e-59 234.6 340 44.1
Cpa.g.c36918 Carica papaya HOM05D004666 ORTHO05D005822 4.6e-57 227.6 219 54.8
ATR0820G266 Amborella trichopoda HOM05D004666 ORTHO05D005822 6.6e-56 223.8 307 44.6
CBR_g38478 Chara braunii HOM05D004666 ORTHO05D005822 8.7e-48 196.8 262 40.8
RhsimUnG0189100 Rhododendron simsii HOM05D004666 ORTHO05D005822 1.1e-45 189.9 247 47.4
SEGI_09998 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 6.4e-43 180.6 131 61.1
Hma1.2p1_2087F.1_g313780 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 8.4e-43 180.3 263 41.8
QL03p004438 Quercus lobata HOM05D004666 ORTHO05D005822 1.1e-42 179.9 191 51.3
Hma1.2p1_0084F.1_g043480 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 7.1e-42 177.2 244 44.7
CDE08G0899 Ceratophyllum demersum HOM05D007279 ORTHO05D009212 1.6e-41 176.0 181 44.8
Rhsim09G0020300 Rhododendron simsii HOM05D004666 ORTHO05D005822 3.5e-41 174.9 656 26.4
QL03p004414 Quercus lobata HOM05D004666 ORTHO05D005822 1.8e-37 162.5 191 47.1
Hma1.2p1_0084F.1_g043500 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 5.3e-37 161.0 484 30.0
Eucgr.L02043 Eucalyptus grandis HOM05D004666 ORTHO05D005822 1.2e-36 159.8 243 41.2
Hma1.2p1_0084F.1_g043490 Hydrangea macrophylla HOM05D004666 ORTHO05D005822 6.2e-30 137.5 113 57.5
ATR0820G291 Amborella trichopoda HOM05D004666 ORTHO05D005822 1.2e-28 133.3 115 47.8
SHI23868 Sapria himalayana HOM05D004666 ORTHO05D005822 1.7e-27 129.4 248 37.1
SEGI_32780 Sequoiadendron giganteum HOM05D004666 ORTHO05D005822 8.7e-24 117.1 231 36.8
CSS0049785 Camellia sinensis var. sinensis HOM05D004666 ORTHO05D005822 8.2e-22 110.5 152 47.4
CDE08G0815 Ceratophyllum demersum HOM05D004666 ORTHO05D005822 1.1e-21 110.2 184 37.5
Sabra06G0024800 Salix brachista HOM05D004666 ORTHO05D005822 5.5e-18 97.8 218 33.0
Haze_16424 Corylus avellana HOM05D004666 ORTHO05D005822 4.6e-17 94.7 208 35.1
RcHm_v2.0_Chr7g0223981 Rosa chinensis HOM05D004666 ORTHO05D005822 6.1e-17 94.4 51 86.3
arahy.Tifrunner.gnm1.ann1.AE8L4W Arachis hypogaea HOM05D004666 ORTHO05D005822 3.0e-16 92.0 108 45.4
Os07g0454400 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 3.7e-14 85.1 90 46.7
QL04p079053 Quercus lobata HOM05D004666 ORTHO05D005822 9.0e-13 80.5 145 35.2
Os02g0307300 Oryza sativa ssp. japonica HOM05D004666 ORTHO05D005822 2.0e-12 79.3 210 31.9
Sabra16G0037300 Salix brachista HOM05D004666 ORTHO05D017783 2.1e-09 69.3 71 54.9
MD03G1008700 Malus domestica HOM05D004666 ORTHO05D005822 3.9e-08 65.1 31 80.6


User provided reference genes

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