Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 4.8e-282 973.8 473 100.0
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.2e-179 633.6 411 77.9
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.1e-164 582.0 327 86.5
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 4.5e-163 578.6 414 70.8
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.0e-162 577.4 423 69.0
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 7.2e-161 571.2 419 70.2
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 8.8e-159 564.3 419 69.5
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.3e-157 560.5 420 68.6
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.5e-155 552.0 456 64.3
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.9e-154 549.3 415 66.7
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.7e-149 533.5 305 84.3
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.7e-146 523.5 425 63.3
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 3.2e-145 519.2 428 64.0
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 1.2e-144 517.3 428 62.9
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.7e-144 516.2 422 64.5
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.7e-144 516.2 417 65.0
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 4.0e-143 512.3 430 61.4
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 5.2e-143 511.9 413 64.4
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 8.8e-143 511.1 409 63.3
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.5e-142 510.4 421 63.2
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 2.0e-142 510.0 417 63.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 4.4e-142 508.8 428 61.2
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 5.7e-142 508.4 414 63.3
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 1.3e-141 507.3 418 62.7
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 2.8e-141 506.1 417 62.4
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 8.3e-141 504.6 428 62.1
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 8.3e-141 504.6 432 61.3
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 8.3e-141 504.6 424 61.3
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.1e-140 504.2 421 62.9
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.8e-140 503.4 414 62.6
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 3.1e-140 502.7 417 62.4
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 3.1e-140 502.7 412 62.4
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 4.1e-140 502.3 419 62.8
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 4.1e-140 502.3 418 62.7
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 9.1e-140 501.1 424 62.3
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 1.2e-139 500.7 409 62.8
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.0e-139 500.0 419 62.5
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 2.7e-139 499.6 414 60.6
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 3.5e-139 499.2 418 62.2
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 5.9e-139 498.4 411 62.5
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 1.0e-138 497.7 421 62.5
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.7e-138 496.9 411 62.8
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 3.8e-138 495.7 404 63.1
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 5.0e-138 495.4 422 60.7
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 1.1e-137 494.2 412 60.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.1e-137 494.2 414 62.1
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 1.9e-137 493.4 416 61.1
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.9e-137 493.4 416 61.1
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.9e-137 493.4 416 61.8
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.2e-137 492.3 280 84.3
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 5.5e-137 491.9 420 59.3
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 9.5e-137 491.1 416 60.8
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.2e-136 490.7 430 59.1
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 2.1e-136 490.0 409 61.1
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.1e-136 490.0 417 60.2
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.1e-136 490.0 422 59.7
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 8.0e-136 488.0 425 60.9
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.8e-135 486.9 419 59.4
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 1.8e-135 486.9 416 60.3
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.8e-135 486.9 411 61.6
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 4.0e-135 485.7 434 58.1
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 6.8e-135 485.0 427 58.1
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 6.8e-135 485.0 384 65.4
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 8.9e-135 484.6 419 59.9
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 8.9e-135 484.6 447 58.8
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.5e-134 483.8 417 60.0
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 4.4e-134 482.3 400 61.0
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.7e-133 480.3 333 70.0
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.7e-133 480.3 425 58.8
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 2.8e-133 479.6 425 58.6
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 6.3e-133 478.4 379 64.6
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 6.3e-133 478.4 450 58.0
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 8.3e-133 478.0 416 58.4
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 8.3e-133 478.0 423 59.1
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.2e-131 474.2 425 58.6
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 2.0e-131 473.4 452 56.4
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.5e-131 472.6 423 57.7
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 3.5e-131 472.6 428 57.5
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 1.7e-130 470.3 393 62.8
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.7e-130 470.3 425 57.9
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 2.9e-130 469.5 420 57.6
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 6.6e-130 468.4 393 62.1
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.1e-129 467.6 426 57.3
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 1.5e-129 467.2 408 59.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 9.5e-129 464.5 411 57.9
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.2e-128 464.2 404 58.9
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 8.0e-128 461.5 401 58.4
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 8.9e-127 458.0 486 54.1
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.2e-126 457.6 426 56.3
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 9.2e-124 448.0 422 58.1
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 3.9e-122 442.6 314 66.9
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 3.3e-121 439.5 445 55.3
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.6e-120 437.2 426 53.8
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 1.6e-120 437.2 476 52.9
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 9.8e-118 427.9 418 56.9
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.7e-117 427.2 289 69.2
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 2.7e-115 419.9 387 57.4
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 6.0e-115 418.7 301 67.4
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 2.3e-114 416.8 415 52.0
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.5e-113 414.1 324 64.2
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.3e-113 412.5 303 67.3
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 6.4e-109 398.7 334 59.6
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.1e-105 387.9 393 50.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 4.3e-105 386.0 420 49.0
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 2.1e-104 383.6 429 49.4
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 2.8e-104 383.3 412 51.9
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 9.9e-102 374.8 337 56.7
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.6e-99 367.5 306 61.4
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.2e-94 351.3 400 48.0
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 4.4e-94 349.4 236 75.0
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.3e-93 347.8 423 46.1
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 6.7e-82 308.9 316 50.9
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.2e-76 290.0 276 56.9
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 2.3e-66 257.3 396 40.7
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.3e-65 253.4 183 62.8
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 1.7e-61 241.1 228 50.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.3e-58 230.7 284 51.1
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 6.1e-51 206.1 371 37.5
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 5.7e-49 199.5 485 30.1
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 5.7e-49 199.5 445 33.7
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.2e-37 161.0 126 63.5
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 2.9e-37 160.6 251 45.0
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 4.2e-36 156.8 211 42.7
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.2e-34 149.8 119 68.1
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.2e-30 138.7 117 61.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 2.6e-25 120.9 106 59.4
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 6.3e-16 89.7 142 44.4
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 2.0e-14 84.7 125 47.2
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.3e-10 71.2 58 62.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 8.9e-10 69.3 46 58.7
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.4e-07 62.0 59 54.2
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 2.4e-07 61.2 59 54.2
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.4e-07 61.2 62 56.5
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.4e-07 61.2 59 54.2
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 4.1e-07 60.5 59 54.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 5.4e-07 60.1 59 54.2
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 5.4e-07 60.1 59 54.2
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 5.4e-07 60.1 59 54.2
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 5.4e-07 60.1 59 54.2
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 9.2e-07 59.3 59 50.8
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.2e-06 58.9 59 52.5
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.6e-06 58.5 59 50.8
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.6e-06 58.5 59 52.5
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 2.0e-06 58.2 59 52.5
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.0e-06 58.2 60 50.0
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.7e-06 57.8 59 50.8
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 2.7e-06 57.8 66 47.0
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 3.5e-06 57.4 59 52.5
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 3.5e-06 57.4 59 52.5
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 4.6e-06 57.0 59 47.5
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 4.6e-06 57.0 59 50.8
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 4.6e-06 57.0 59 50.8
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.6e-06 57.0 59 50.8
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.6e-06 57.0 59 50.8
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 4.6e-06 57.0 59 50.8
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.0e-06 56.6 59 50.8
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 7.8e-06 56.2 59 50.8


User provided reference genes

Program Settings