Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0409161 Rosa chinensis HOM05D000539 ORTHO05D000233 1.2e-45 186.0 89 100.0
RcHm_v2.0_Chr6g0267111 Rosa chinensis HOM05D000539 ORTHO05D000233 2.4e-25 118.6 79 73.4
DCAR_031676 Daucus carota HOM05D000539 ORTHO05D000233 2.0e-19 99.0 79 54.4
RcHm_v2.0_Chr2g0123111 Rosa chinensis HOM05D000539 ORTHO05D000233 2.1e-13 79.0 79 50.6
RcHm_v2.0_Chr6g0271081 Rosa chinensis HOM05D000539 ORTHO05D000233 2.8e-13 78.6 79 50.6
FvH4_3g19213 Fragaria vesca HOM05D000539 ORTHO05D000233 6.1e-13 77.4 75 50.7
FvH4_3g31713 Fragaria vesca HOM05D000539 ORTHO05D000233 6.1e-13 77.4 75 50.7
FAN09G4072 Fragaria x ananassa HOM05D000539 ORTHO05D000233 8.0e-13 77.0 72 54.2
RcHm_v2.0_Chr1g0329531 Rosa chinensis HOM05D000539 ORTHO05D000233 8.0e-13 77.0 79 50.6
RcHm_v2.0_Chr5g0072981 Rosa chinensis HOM05D000539 ORTHO05D000233 8.0e-13 77.0 79 51.9
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 8.0e-13 77.0 79 50.6
RcHm_v2.0_Chr2g0108861 Rosa chinensis HOM05D000539 ORTHO05D000233 1.0e-12 76.6 79 49.4
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-12 76.3 72 54.2
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-12 76.3 72 54.2
FAN11G1867 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.4e-12 76.3 70 57.1
RcHm_v2.0_Chr2g0147531 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-12 76.3 71 54.9
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-12 76.3 72 54.2
RcHm_v2.0_Chr5g0079551 Rosa chinensis HOM05D000539 ORTHO05D000233 1.4e-12 76.3 79 50.6
RcHm_v2.0_Chr4g0393861 Rosa chinensis HOM05D000539 ORTHO05D000233 1.8e-12 75.9 82 51.2
FAN16G0584 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-12 75.5 78 52.6
FAN17G3107 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-12 75.5 78 52.6
FAN22G1565 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-12 75.5 78 52.6
FAN24G2468 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-12 75.5 78 52.6
FAN25G0088 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-12 75.5 78 52.6
FAN28G1622 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.3e-12 75.5 78 52.6
Prupe.2G155700 Prunus persica HOM05D000539 ORTHO05D000233 2.3e-12 75.5 81 46.9
Prupe.4G254700 Prunus persica HOM05D000539 ORTHO05D000233 2.3e-12 75.5 81 46.9
Prupe.7G029100 Prunus persica HOM05D000539 ORTHO05D000592 2.3e-12 75.5 81 46.9
Prupe.8G054500 Prunus persica HOM05D000539 ORTHO05D000592 2.3e-12 75.5 81 46.9
FAN17G0771 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.0e-12 75.1 75 53.3
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 3.0e-12 75.1 72 51.4
FvH4_1g25001 Fragaria vesca HOM05D000539 ORTHO05D000233 4.0e-12 74.7 79 49.4
FvH4_4g10052 Fragaria vesca HOM05D000539 ORTHO05D000233 4.0e-12 74.7 72 52.8
RcHm_v2.0_Chr4g0414231 Rosa chinensis HOM05D000539 ORTHO05D000233 4.0e-12 74.7 79 48.1
RcHm_v2.0_Chr5g0072061 Rosa chinensis HOM05D000539 ORTHO05D000233 4.0e-12 74.7 79 48.1
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 5.2e-12 74.3 79 48.1
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 5.2e-12 74.3 79 50.6
RcHm_v2.0_Chr3g0483461 Rosa chinensis HOM05D000539 ORTHO05D000233 5.2e-12 74.3 71 53.5
RcHm_v2.0_Chr3g0485221 Rosa chinensis HOM05D000539 ORTHO05D000233 5.2e-12 74.3 71 53.5
RcHm_v2.0_Chr1g0342101 Rosa chinensis HOM05D000539 ORTHO05D000233 6.8e-12 73.9 79 53.2
RcHm_v2.0_Chr4g0391901 Rosa chinensis HOM05D000539 ORTHO05D000233 6.8e-12 73.9 79 53.2
RcHm_v2.0_Chr7g0228371 Rosa chinensis HOM05D000539 ORTHO05D000233 6.8e-12 73.9 79 53.2
FvH4_1g28483 Fragaria vesca HOM05D000539 ORTHO05D000233 8.9e-12 73.6 79 46.8
FvH4_2g21272 Fragaria vesca HOM05D000539 ORTHO05D000233 8.9e-12 73.6 79 46.8
FvH4_6g32742 Fragaria vesca HOM05D000539 ORTHO05D000233 1.2e-11 73.2 72 52.8
FAN09G2875 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.2e-11 73.2 78 53.8
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 1.2e-11 73.2 72 51.4
FvH4_4g15803 Fragaria vesca HOM05D000539 ORTHO05D000233 1.5e-11 72.8 72 52.8
Prupe.7G055100 Prunus persica HOM05D000539 ORTHO05D000233 1.5e-11 72.8 81 45.7
FvH4_6g12902 Fragaria vesca HOM05D000539 ORTHO05D000233 2.0e-11 72.4 79 45.6
Prupe.1G130900 Prunus persica HOM05D000539 ORTHO05D000233 2.6e-11 72.0 81 44.4
Prupe.3G107500 Prunus persica HOM05D000539 ORTHO05D000233 2.6e-11 72.0 81 44.4
Prupe.6G193600 Prunus persica HOM05D000539 ORTHO05D000233 2.6e-11 72.0 72 51.4
RcHm_v2.0_Chr2g0095191 Rosa chinensis HOM05D000107 ORTHO05D000062 2.6e-11 72.0 79 49.4
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 3.4e-11 71.6 72 50.0
FAN19G0390 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.4e-11 71.6 73 54.8
FAN02G2878 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.4e-11 71.2 73 54.8
FAN02G4277 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.4e-11 71.2 73 54.8
FAN28G1329 Fragaria x ananassa HOM05D000723 ORTHO05D001760 4.4e-11 71.2 72 50.0
FvH4_4g09822 Fragaria vesca HOM05D000107 ORTHO05D000062 7.5e-11 70.5 73 54.8
FvH4_6g12431 Fragaria vesca HOM05D000539 ORTHO05D000233 7.5e-11 70.5 75 48.0
RcHm_v2.0_Chr4g0401831 Rosa chinensis HOM05D000539 ORTHO05D000233 7.5e-11 70.5 72 48.6
FvH4_3g30982 Fragaria vesca HOM05D000539 ORTHO05D000233 9.8e-11 70.1 73 53.4
FvH4_7g09681 Fragaria vesca HOM05D000539 ORTHO05D000233 9.8e-11 70.1 73 54.8
RcHm_v2.0_Chr2g0102081 Rosa chinensis HOM05D000539 ORTHO05D000233 9.8e-11 70.1 79 49.4
FvH4_3g14251 Fragaria vesca HOM05D000539 ORTHO05D000233 1.3e-10 69.7 79 45.6
FvH4_6g23351 Fragaria vesca HOM05D000539 ORTHO05D000233 1.7e-10 69.3 75 46.7
FvH4_3g26442 Fragaria vesca HOM05D000539 ORTHO05D000233 2.8e-10 68.6 72 50.0
FvH4_5g20921 Fragaria vesca HOM05D000539 ORTHO05D000233 2.8e-10 68.6 72 50.0
RcHm_v2.0_Chr2g0120301 Rosa chinensis HOM05D000539 ORTHO05D000233 2.8e-10 68.6 54 61.1
FAN18G3492 Fragaria x ananassa HOM05D000539 ORTHO05D000233 3.7e-10 68.2 78 51.3
RcHm_v2.0_Chr3g0462471 Rosa chinensis HOM05D000539 ORTHO05D000233 3.7e-10 68.2 72 50.0
RcHm_v2.0_Chr5g0082411 Rosa chinensis HOM05D000539 ORTHO05D000233 3.7e-10 68.2 72 50.0
FAN03G0903 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.9e-10 67.8 78 50.0
Prupe.4G254500 Prunus persica HOM05D000539 ORTHO05D000233 4.9e-10 67.8 81 43.2
MELO3C030421.2 Cucumis melo HOM05D000539 ORTHO05D000233 6.3e-10 67.4 79 45.6
FAN15G1280 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.4e-09 66.2 78 50.0
MELO3C016215.2 Cucumis melo HOM05D000539 ORTHO05D000233 2.4e-09 65.5 72 43.1
FvH4_4g16571 Fragaria vesca HOM05D000539 ORTHO05D000233 2.4e-09 65.5 79 44.3
MELO3C027932.2 Cucumis melo HOM05D000539 ORTHO05D000233 3.1e-09 65.1 79 43.0
CsaV3_4G007110 Cucumis sativus L. HOM05D000539 ORTHO05D000233 3.1e-09 65.1 72 43.1
FAN11G1109 Fragaria x ananassa HOM05D000539 ORTHO05D000233 4.1e-09 64.7 80 46.2
ClCG07G011140 Citrullus lanatus HOM05D000539 ORTHO05D000233 5.4e-09 64.3 72 43.1
FvH4_5g19271 Fragaria vesca HOM05D000539 ORTHO05D000233 9.2e-09 63.5 80 45.0
RcHm_v2.0_Chr7g0227321 Rosa chinensis HOM05D000539 ORTHO05D000233 1.2e-08 63.2 72 45.8
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-08 62.8 72 44.4
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-08 62.8 72 44.4
FvH4_3g14361 Fragaria vesca HOM05D000539 ORTHO05D000233 2.0e-08 62.4 80 45.0
FvH4_7g02602 Fragaria vesca HOM05D000539 ORTHO05D000233 2.0e-08 62.4 80 45.0
FAN14G5321 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.0e-08 62.4 80 45.0
FAN24G3557 Fragaria x ananassa HOM05D000539 ORTHO05D000233 2.0e-08 62.4 80 45.0
RcHm_v2.0_Chr1g0352301 Rosa chinensis HOM05D000539 ORTHO05D000233 2.0e-08 62.4 72 45.8
RcHm_v2.0_Chr4g0417051 Rosa chinensis HOM05D000539 ORTHO05D000233 4.5e-08 61.2 72 44.4
FAN06G1168 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.9e-08 60.8 80 43.8
RcHm_v2.0_Chr5g0066151 Rosa chinensis HOM05D000539 ORTHO05D000233 5.9e-08 60.8 72 43.1
SHI00366 Sapria himalayana HOM05D000616 ORTHO05D000233 5.9e-08 60.8 79 40.5
RcHm_v2.0_Chr3g0494441 Rosa chinensis HOM05D000539 ORTHO05D000233 7.8e-08 60.5 60 43.3
SHI08656 Sapria himalayana HOM05D000616 ORTHO05D000233 7.8e-08 60.5 79 40.5
RhsimUnG0218400 Rhododendron simsii HOM05D000107 ORTHO05D000062 1.7e-07 59.3 65 46.2
PSO541G5385 Papaver somniferum HOM05D000539 ORTHO05D000233 2.3e-07 58.9 60 41.7
PSO675G7387 Papaver somniferum HOM05D000539 ORTHO05D000233 2.3e-07 58.9 60 41.7
RcHm_v2.0_Chr4g0385451 Rosa chinensis HOM05D000539 ORTHO05D000233 2.3e-07 58.9 54 44.4
SHI38857 Sapria himalayana HOM05D000616 ORTHO05D000233 2.3e-07 58.9 77 40.3
SHI39690 Sapria himalayana HOM05D000616 ORTHO05D000233 2.3e-07 58.9 77 41.6
PSO170G4584 Papaver somniferum HOM05D000539 ORTHO05D000233 2.9e-07 58.5 72 38.9
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 2.9e-07 58.5 72 38.9
RcHm_v2.0_Chr2g0145261 Rosa chinensis HOM05D000539 ORTHO05D000233 2.9e-07 58.5 60 45.0
SHI45057 Sapria himalayana HOM05D000616 ORTHO05D000233 3.9e-07 58.2 67 43.3
Ciclev10017763m.g Citrus clementina HOM05D000616 ORTHO05D000233 5.0e-07 57.8 50 48.0
FvH4_3g31624 Fragaria vesca HOM05D000539 ORTHO05D000592 5.0e-07 57.8 74 50.0
FAN20G0456 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.0e-07 57.8 57 49.1
FAN24G0297 Fragaria x ananassa HOM05D000539 ORTHO05D000233 5.0e-07 57.8 57 49.1
SHI13009 Sapria himalayana HOM05D000616 ORTHO05D000233 5.0e-07 57.8 79 38.0
SHI18457 Sapria himalayana HOM05D000616 ORTHO05D000233 5.0e-07 57.8 79 39.2
SHI42017 Sapria himalayana HOM05D000616 ORTHO05D000233 5.0e-07 57.8 67 41.8
SHI45064 Sapria himalayana HOM05D000616 ORTHO05D000233 5.0e-07 57.8 79 39.2
SHI40917 Sapria himalayana HOM05D000616 ORTHO05D000233 6.6e-07 57.4 71 39.4
SHI41059 Sapria himalayana HOM05D000616 ORTHO05D000233 6.6e-07 57.4 71 39.4
GSVIVG01000866001 Vitis vinifera HOM05D000539 ORTHO05D000233 6.6e-07 57.4 77 39.0
FvH4_2g04948 Fragaria vesca HOM05D000539 ORTHO05D000233 8.6e-07 57.0 61 44.3
FvH4_2g07752 Fragaria vesca HOM05D000539 ORTHO05D000233 8.6e-07 57.0 62 45.2
SHI00620 Sapria himalayana HOM05D000616 ORTHO05D000233 8.6e-07 57.0 79 38.0
SHI50567 Sapria himalayana HOM05D000616 ORTHO05D000233 1.1e-06 56.6 79 38.0
RcHm_v2.0_Chr1g0340601 Rosa chinensis HOM05D000539 ORTHO05D000233 1.5e-06 56.2 62 45.2
SHI08770 Sapria himalayana HOM05D000616 ORTHO05D000233 1.5e-06 56.2 79 36.7
SHI17347 Sapria himalayana HOM05D000616 ORTHO05D000233 1.5e-06 56.2 79 38.0
SHI23185 Sapria himalayana HOM05D000616 ORTHO05D000233 1.5e-06 56.2 79 36.7
SHI32661 Sapria himalayana HOM05D000616 ORTHO05D000233 1.5e-06 56.2 77 39.0
FAN04G3167 Fragaria x ananassa HOM05D000539 ORTHO05D000233 1.9e-06 55.8 80 38.8
SHI25186 Sapria himalayana HOM05D000616 ORTHO05D000233 2.5e-06 55.5 79 36.7
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 3.3e-06 55.1 67 40.3
SHI37190 Sapria himalayana HOM05D000616 ORTHO05D000233 3.3e-06 55.1 79 38.0
ClCG03G012240 Citrullus lanatus HOM05D016206 ORTHO05D000233 4.3e-06 54.7 64 43.8
MELO3C027188.2 Cucumis melo HOM05D000583 ORTHO05D000233 4.3e-06 54.7 79 41.8
MELO3C031353.2 Cucumis melo HOM05D000539 ORTHO05D000233 4.3e-06 54.7 67 46.3
SHI22480 Sapria himalayana HOM05D000616 ORTHO05D000233 4.3e-06 54.7 79 35.4
RcHm_v2.0_Chr1g0325021 Rosa chinensis HOM05D000539 ORTHO05D000233 5.6e-06 54.3 67 40.3
MELO3C033340.2 Cucumis melo HOM05D000539 ORTHO05D000233 7.3e-06 53.9 67 43.3
Duzib084G0418 Durio zibethinus HOM05D000539 ORTHO05D000233 7.3e-06 53.9 69 42.0
SHI09962 Sapria himalayana HOM05D000616 ORTHO05D000233 7.3e-06 53.9 67 40.3
SHI38771 Sapria himalayana HOM05D000616 ORTHO05D000233 7.3e-06 53.9 79 39.2
ClCG01G011790 Citrullus lanatus HOM05D000539 ORTHO05D000233 9.5e-06 53.5 70 42.9
Lsat_1_v5_gn_9_120341 Lactuca sativa HOM05D000539 ORTHO05D000233 9.5e-06 53.5 57 42.1
RcHm_v2.0_Chr2g0132431 Rosa chinensis HOM05D000539 ORTHO05D000233 9.5e-06 53.5 51 58.8


User provided reference genes

Program Settings