Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 1.1e-56 223.4 139 100.0
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 1.2e-18 97.1 130 56.2
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 1.3e-17 93.6 108 49.1
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.7e-17 93.2 129 45.7
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 1.7e-17 93.2 119 49.6
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.2e-17 92.8 109 58.7
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 6.4e-17 91.3 111 47.7
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 6.4e-17 91.3 111 48.6
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 8.4e-17 90.9 108 49.1
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.1e-16 90.5 109 57.8
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 1.1e-16 90.5 128 47.7
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.4e-16 90.1 106 50.9
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 4.2e-16 88.6 128 46.9
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 5.4e-16 88.2 108 48.1
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 7.1e-16 87.8 112 47.3
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 9.3e-16 87.4 108 61.1
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 1.6e-15 86.7 132 56.1
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.6e-15 86.7 108 62.0
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 2.1e-15 86.3 137 44.5
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 2.1e-15 86.3 118 47.5
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.7e-15 85.9 108 49.1
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.5e-15 85.5 109 63.3
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 6.0e-15 84.7 127 40.2
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 6.0e-15 84.7 127 40.2
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 6.0e-15 84.7 128 46.1
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 6.0e-15 84.7 125 51.2
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 7.8e-15 84.3 119 45.4
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 7.8e-15 84.3 124 47.6
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.3e-14 83.6 111 45.0
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.7e-14 83.2 108 49.1
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 2.3e-14 82.8 108 44.4
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 2.3e-14 82.8 128 45.3
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 6.6e-14 81.3 111 46.8
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 8.7e-14 80.9 107 47.7
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 1.5e-13 80.1 106 44.3
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 1.5e-13 80.1 108 43.5
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 1.5e-13 80.1 124 39.5
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.9e-13 79.7 108 48.1
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 7.3e-13 77.8 116 44.8
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 9.6e-13 77.4 108 53.7
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 4.8e-12 75.1 103 45.6
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.1e-11 73.9 123 39.8
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 1.1e-11 73.9 129 41.1
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 2.4e-11 72.8 102 44.1
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 9.0e-11 70.9 114 38.6
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.2e-10 70.5 114 42.1
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.2e-10 70.5 114 42.1
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 1.2e-10 70.5 122 38.5
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.5e-10 70.1 104 41.3
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 2.6e-10 69.3 127 50.4
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 2.6e-10 69.3 128 37.5
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 7.6e-10 67.8 108 38.0
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 2.9e-09 65.9 105 38.1
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 8.4e-09 64.3 119 45.4
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 8.4e-09 64.3 101 48.5
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 3.2e-08 62.4 105 31.4
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 7.1e-08 61.2 99 39.4
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 7.1e-08 61.2 103 46.6
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 3.5e-07 58.9 129 39.5
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 6.0e-07 58.2 112 33.9
PSO541G2691 Papaver somniferum HOM05D002704 ORTHO05D002891 1.0e-06 57.4 97 35.1
PSO781G0307 Papaver somniferum HOM05D002704 ORTHO05D002891 1.0e-06 57.4 108 34.3
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 2.3e-06 56.2 110 30.9
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 6.6e-06 54.7 129 27.9
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 6.6e-06 54.7 143 30.1
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 8.7e-06 54.3 111 31.5


User provided reference genes

Program Settings