Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0408761 Rosa chinensis HOM05D002976 ORTHO05D003217 2.2e-16 87.8 43 100.0
FvH4_4g11620 Fragaria vesca HOM05D002976 ORTHO05D003217 4.1e-15 83.6 43 95.3
FAN22G1163 Fragaria x ananassa HOM05D002976 ORTHO05D003217 4.1e-15 83.6 43 95.3
RcHm_v2.0_Chr4g0408741 Rosa chinensis HOM05D002976 ORTHO05D003217 4.1e-15 83.6 43 95.3
FAN12G2375 Fragaria x ananassa HOM05D002976 ORTHO05D003217 1.2e-14 82.0 43 93.0
FAN17G1305 Fragaria x ananassa HOM05D002976 ORTHO05D003217 1.2e-14 82.0 43 93.0
Prupe.1G182700 Prunus persica HOM05D002976 ORTHO05D003217 7.8e-14 79.3 43 90.7
MD04G1031000 Malus domestica HOM05D002976 ORTHO05D003217 5.1e-13 76.6 43 86.0
FAN12G2231 Fragaria x ananassa HOM05D002976 ORTHO05D003217 1.5e-12 75.1 38 94.7
Ciclev10019835m.g Citrus clementina HOM05D002976 ORTHO05D003217 2.5e-12 74.3 43 81.4
CiPaw.01G105100 Carya illinoinensis HOM05D002976 ORTHO05D003217 3.3e-12 73.9 43 83.7
arahy.Tifrunner.gnm1.ann1.2984HV Arachis hypogaea HOM05D002976 ORTHO05D003217 4.3e-12 73.6 43 81.4
arahy.Tifrunner.gnm1.ann1.CAZS7V Arachis hypogaea HOM05D002976 ORTHO05D003217 4.3e-12 73.6 43 81.4
QL10p046359 Quercus lobata HOM05D002976 ORTHO05D003217 4.3e-12 73.6 42 81.0
Cfa015789 Carpinus fangiana HOM05D002976 ORTHO05D003217 7.3e-12 72.8 43 83.7
Haze_00704 Corylus avellana HOM05D002976 ORTHO05D003217 7.3e-12 72.8 43 83.7
Duzib151G0937 Durio zibethinus HOM05D002976 ORTHO05D003217 9.5e-12 72.4 43 81.4
Thecc.04G182400 Theobroma cacao HOM05D002976 ORTHO05D003217 9.5e-12 72.4 43 81.4
GSVIVG01013539001 Vitis vinifera HOM05D002976 ORTHO05D003217 9.5e-12 72.4 43 79.1
Gohir.A09G210300 Gossypium hirsutum HOM05D002976 ORTHO05D003217 1.6e-11 71.6 43 79.1
Gohir.D09G203700 Gossypium hirsutum HOM05D002976 ORTHO05D003217 1.6e-11 71.6 43 79.1
Gorai.006G227600 Gossypium raimondii HOM05D002976 ORTHO05D003217 1.6e-11 71.6 43 79.1
PSO017G3444 Papaver somniferum HOM05D002976 ORTHO05D003217 1.6e-11 71.6 43 81.4
PSO675G2488 Papaver somniferum HOM05D002976 ORTHO05D003217 1.6e-11 71.6 43 81.4
Dinv44222 Davidia involucrata HOM05D002976 ORTHO05D003217 2.1e-11 71.2 43 81.4
Sabra02G0176200 Salix brachista HOM05D002976 ORTHO05D003217 2.8e-11 70.9 43 79.1
TAR633G1340 Trochodendron aralioides HOM05D002976 ORTHO05D003217 2.8e-11 70.9 43 79.1
COL.COLO4_24361 Corchorus olitorius HOM05D002976 ORTHO05D003217 3.6e-11 70.5 43 79.1
Potri.002G231000 Populus trichocarpa HOM05D002976 ORTHO05D003217 3.6e-11 70.5 43 79.1
Aqoxy2G04084 Aquilegia oxysepala HOM05D002976 ORTHO05D003217 4.7e-11 70.1 43 74.4
CSS0013968 Camellia sinensis var. sinensis HOM05D002976 ORTHO05D003217 4.7e-11 70.1 43 81.4
CSS0017794 Camellia sinensis var. sinensis HOM05D002976 ORTHO05D003217 4.7e-11 70.1 43 81.4
PGR142G4264 Punica granatum HOM05D002976 ORTHO05D003217 6.2e-11 69.7 43 81.4
VMungo1383G2368 Vigna mungo HOM05D002976 ORTHO05D003217 6.2e-11 69.7 43 76.7
Atru.chr3.1642 Acer truncatum HOM05D002976 ORTHO05D003217 8.1e-11 69.3 43 76.7
Phvul.008G003000 Phaseolus vulgaris HOM05D002976 ORTHO05D003217 8.1e-11 69.3 43 76.7
Rhsim09G0033400 Rhododendron simsii HOM05D002976 ORTHO05D003217 8.1e-11 69.3 43 81.4
TWI38G0628 Tripterygium wilfordii HOM05D002976 ORTHO05D003217 8.1e-11 69.3 43 76.7
AL4G41840 Arabidopsis lyrata HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 74.4
BcaB01g03406 Brassica carinata HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 74.4
A03p24090 Brassica napus HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 74.4
BolC3t15230H Brassica oleracea HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 74.4
BraA03t11619Z Brassica rapa HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 74.4
Carub.0004s2565 Capsella rubella HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 74.4
Eucgr.H00431 Eucalyptus grandis HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 74.4
Thhalv10001429m.g Eutrema salsugineum HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 76.7
Peaxi162Scf00353g00744 Petunia axillaris HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 81.4
vmacro00578 Vaccinium macrocarpon HOM05D002976 ORTHO05D003217 1.1e-10 68.9 43 81.4
AT2G43180 Arabidopsis thaliana HOM05D002976 ORTHO05D003217 1.4e-10 68.6 43 74.4
CANSAT78G1494 Cannabis sativa HOM05D002976 ORTHO05D003217 1.4e-10 68.6 43 76.7
Migut.N00790 Erythranthe guttata HOM05D002976 ORTHO05D003217 1.4e-10 68.6 43 79.1
MELO3C017685.2 Cucumis melo HOM05D002976 ORTHO05D003217 1.8e-10 68.2 43 76.7
CsaV3_4G003700 Cucumis sativus L. HOM05D002976 ORTHO05D003217 1.8e-10 68.2 43 76.7
Glyma.08G362200 Glycine max HOM05D002976 ORTHO05D003217 1.8e-10 68.2 43 74.4
Ca_25795_v3 Cicer arietinum L. HOM05D002976 ORTHO05D003217 2.3e-10 67.8 43 81.4
Hma1.2p1_1187F.1_g265160 Hydrangea macrophylla HOM05D002976 ORTHO05D003217 2.3e-10 67.8 43 74.4
Lj6A64G34 Lonicera japonica HOM05D002976 ORTHO05D003217 2.3e-10 67.8 43 76.7
Nitab4.5_0004719g0060 Nicotiana tabacum HOM05D002976 ORTHO05D003217 3.1e-10 67.4 43 79.1
DCAR_023911 Daucus carota HOM05D002976 ORTHO05D003217 4.0e-10 67.0 43 74.4
Sp4g25300 Schrenkiella parvula HOM05D002976 ORTHO05D003217 4.0e-10 67.0 43 72.1
CARHR138240 Cardamine hirsuta HOM05D002976 ORTHO05D003217 5.2e-10 66.6 43 72.1
Cpa.g.sc71.49 Carica papaya HOM05D002976 ORTHO05D003217 5.2e-10 66.6 43 76.7
Solyc05g056270.3 Solanum lycopersicum HOM05D002976 ORTHO05D003217 5.2e-10 66.6 43 79.1
Sopen05g034660 Solanum pennellii HOM05D002976 ORTHO05D003217 5.2e-10 66.6 43 79.1
PGSC0003DMG400023455 Solanum tuberosum HOM05D002976 ORTHO05D003217 5.2e-10 66.6 43 79.1
THA.LOC104803535 Tarenaya hassleriana HOM05D002976 ORTHO05D003217 5.2e-10 66.6 41 73.2
unitig_736.g22470 Utricularia gibba HOM05D002976 ORTHO05D003217 5.2e-10 66.6 43 72.1
vmacro00581 Vaccinium macrocarpon HOM05D002976 ORTHO05D003217 6.8e-10 66.2 43 79.1
MSTRG.9768 Avicennia marina HOM05D002976 ORTHO05D003217 8.9e-10 65.9 43 74.4
Glyma.18G299600 Glycine max HOM05D002976 ORTHO05D003217 8.9e-10 65.9 43 72.1
Medtr7g006260 Medicago truncatula HOM05D002976 ORTHO05D003217 8.9e-10 65.9 42 78.6
Actinidia35899 Actinidia chinensis HOM05D002976 ORTHO05D003217 1.5e-09 65.1 43 72.1
Sed0018165 Sechium edule HOM05D002976 ORTHO05D003217 1.5e-09 65.1 43 74.4
TPR.G15625 Trifolium pratense HOM05D002976 ORTHO05D003217 2.0e-09 64.7 43 74.4
BcaC01g05252 Brassica carinata HOM05D002976 ORTHO05D003217 2.6e-09 64.3 40 75.0
C03p28680 Brassica napus HOM05D002976 ORTHO05D003217 2.6e-09 64.3 40 75.0
Aa31LG1G24980 Aethionema arabicum HOM05D002976 ORTHO05D003217 3.4e-09 63.9 43 69.8
HanXRQChr07g0186741 Helianthus annuus HOM05D002976 ORTHO05D003217 3.4e-09 63.9 43 74.4
Lsat_1_v5_gn_6_56581 Lactuca sativa HOM05D002976 ORTHO05D003217 3.4e-09 63.9 43 72.1
ClCG07G016570 Citrullus lanatus HOM05D002976 ORTHO05D003217 4.4e-09 63.5 42 69.0
Psat3g207360 Pisum sativum HOM05D002976 ORTHO05D003217 5.8e-09 63.2 43 74.4
CAN.G1921.5 Capsicum annuum HOM05D002976 ORTHO05D003217 9.9e-09 62.4 43 72.1
EL10Ac5g11603 Beta vulgaris HOM05D002976 ORTHO05D003217 1.3e-08 62.0 43 74.4
Nn1g09744 Nelumbo nucifera HOM05D002976 ORTHO05D003217 1.3e-08 62.0 43 74.4
Sc07g0007200 Simmondsia chinensis HOM05D002976 ORTHO05D003217 4.9e-08 60.1 43 76.7
MBI11_g02541_MAGBIO Magnolia biondii HOM05D002976 ORTHO05D003217 1.4e-07 58.5 50 56.0
Sed0020117 Sechium edule HOM05D002976 ORTHO05D003217 1.4e-07 58.5 44 72.7
Lalb_Chr04g0257271 Lupinus albus HOM05D002976 ORTHO05D003217 2.4e-07 57.8 41 68.3
ATR0743G051 Amborella trichopoda HOM05D002976 ORTHO05D003217 2.7e-06 54.3 48 60.4


User provided reference genes

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