Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 7.7e-65 250.4 129 100.0
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.1e-55 219.9 123 90.2
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 1.9e-55 219.2 123 89.4
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.6e-54 216.1 123 88.6
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 7.4e-52 207.2 125 84.8
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 8.2e-51 203.8 125 81.6
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 1.4e-50 203.0 125 83.2
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 1.8e-50 202.6 128 82.0
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 1.2e-49 199.9 124 80.6
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 1.2e-49 199.9 128 82.0
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 5.9e-49 197.6 128 77.3
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 7.7e-49 197.2 125 79.2
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 7.7e-49 197.2 125 78.4
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.0e-48 196.8 120 82.5
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 2.2e-48 195.7 120 82.5
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 2.9e-48 195.3 119 82.4
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 5.0e-48 194.5 120 81.7
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 5.0e-48 194.5 120 81.7
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 8.5e-48 193.7 127 78.7
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 1.1e-47 193.4 120 79.2
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 1.1e-47 193.4 122 78.7
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 1.9e-47 192.6 121 79.3
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 2.5e-47 192.2 121 78.5
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 2.5e-47 192.2 121 79.3
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 2.5e-47 192.2 122 79.5
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 3.2e-47 191.8 122 77.9
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 5.5e-47 191.0 122 79.5
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 3.6e-46 188.3 126 76.2
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 6.1e-46 187.6 124 77.4
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 6.1e-46 187.6 122 77.9
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 1.0e-45 186.8 128 75.8
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 1.4e-45 186.4 127 76.4
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 4.0e-45 184.9 127 74.0
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 5.2e-45 184.5 122 76.2
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 5.2e-45 184.5 122 78.7
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 6.7e-45 184.1 122 76.2
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 6.7e-45 184.1 122 76.2
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 8.8e-45 183.7 122 77.0
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 8.8e-45 183.7 120 78.3
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.2e-44 183.3 122 76.2
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 2.0e-44 182.6 119 76.5
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 2.6e-44 182.2 132 72.7
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 2.6e-44 182.2 132 72.7
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 2.6e-44 182.2 116 78.4
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 3.3e-44 181.8 126 73.0
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 3.3e-44 181.8 131 73.3
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 4.4e-44 181.4 134 71.6
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 5.7e-44 181.0 121 76.0
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 5.7e-44 181.0 129 72.9
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 1.3e-43 179.9 119 76.5
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 1.7e-43 179.5 119 73.9
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 1.7e-43 179.5 128 72.7
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 1.7e-43 179.5 110 82.7
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 2.2e-43 179.1 119 75.6
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 2.2e-43 179.1 129 73.6
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 2.2e-43 179.1 144 66.0
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 2.8e-43 178.7 128 72.7
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 2.8e-43 178.7 128 72.7
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 2.8e-43 178.7 131 72.5
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 3.7e-43 178.3 120 73.3
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 4.8e-43 177.9 127 73.2
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 6.3e-43 177.6 118 74.6
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 8.2e-43 177.2 120 74.2
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 8.2e-43 177.2 147 66.7
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 8.2e-43 177.2 118 77.1
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.1e-42 176.8 119 75.6
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 1.1e-42 176.8 119 74.8
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 1.4e-42 176.4 122 72.1
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 1.4e-42 176.4 119 74.8
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.4e-42 176.4 121 75.2
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 1.8e-42 176.0 127 72.4
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 3.1e-42 175.3 127 71.7
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 4.1e-42 174.9 120 75.0
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 4.1e-42 174.9 128 71.1
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 7.0e-42 174.1 126 70.6
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.6e-41 172.9 127 71.7
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 2.0e-41 172.6 126 71.4
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 2.0e-41 172.6 128 70.3
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 7.7e-41 170.6 117 74.4
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 2.9e-40 168.7 127 70.1
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 3.8e-40 168.3 121 70.2
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 3.8e-40 168.3 121 70.2
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 6.5e-40 167.5 119 73.9
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 1.1e-39 166.8 119 72.3
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 1.1e-39 166.8 119 73.1
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 1.5e-39 166.4 130 66.9
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 1.9e-39 166.0 130 68.5
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 1.9e-39 166.0 122 68.0
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.2e-39 165.2 124 70.2
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 3.2e-39 165.2 119 70.6
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 4.2e-39 164.9 119 73.9
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 2.1e-38 162.5 119 68.9
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 3.6e-38 161.8 126 69.8
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 3.0e-37 158.7 119 71.4
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 6.8e-37 157.5 131 64.9
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 1.2e-36 156.8 118 66.1
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.7e-35 152.9 122 67.2
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 4.8e-35 151.4 122 62.3
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 1.4e-34 149.8 118 66.1
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 5.4e-34 147.9 88 84.1
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 1.9e-31 139.4 118 61.9
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 1.6e-30 136.3 84 81.0
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 1.6e-30 136.3 85 81.2
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 2.8e-30 135.6 83 83.1
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 6.1e-30 134.4 83 81.9
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 1.0e-29 133.7 86 77.9
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 1.0e-29 133.7 123 60.2
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 1.4e-29 133.3 119 63.9
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 1.8e-29 132.9 124 61.3
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 3.0e-29 132.1 83 79.5
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 5.2e-29 131.3 119 63.0
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 5.2e-29 131.3 119 63.0
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 5.2e-29 131.3 119 62.2
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 5.2e-29 131.3 119 63.0
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 8.8e-29 130.6 119 62.2
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 8.8e-29 130.6 119 62.2
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 9.8e-28 127.1 121 56.2
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 2.8e-27 125.6 78 78.2
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 1.1e-26 123.6 151 49.0
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 1.1e-26 123.6 124 54.8
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 1.4e-26 123.2 117 53.0
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 1.2e-25 120.2 84 73.8
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 2.9e-24 115.5 68 80.9
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 3.3e-23 112.1 129 51.2
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 3.6e-22 108.6 145 45.5
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 4.0e-21 105.1 81 64.2
Actinidia07783 Actinidia chinensis HOM05D005449 ORTHO05D006916 8.9e-21 104.0 73 71.2
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 2.0e-20 102.8 123 47.2
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 2.1e-14 82.8 127 42.5
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.7e-14 81.6 40 95.0
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 2.3e-13 79.3 114 43.9
Manes.01G220201 Manihot esculenta HOM05D005449 ORTHO05D006916 1.3e-11 73.6 84 52.4
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 4.9e-11 71.6 85 51.8
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.2e-09 67.0 38 78.9
C06p20730 Brassica napus HOM05D005449 ORTHO05D027985 1.3e-08 63.5 62 54.8
BolC6t37256H Brassica oleracea HOM05D005449 ORTHO05D027985 1.3e-08 63.5 62 54.8
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 2.1e-06 56.2 33 75.8


User provided reference genes

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