Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 2.6e-32 141.4 67 100.0
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 3.3e-27 124.4 65 90.8
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 9.6e-27 122.9 65 90.8
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 2.8e-26 121.3 65 89.2
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 1.4e-25 119.0 65 87.7
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 2.4e-25 118.2 65 87.7
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 2.4e-25 118.2 65 87.7
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 2.0e-24 115.2 65 83.1
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 5.8e-24 113.6 67 86.6
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 2.9e-23 111.3 65 81.5
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 8.4e-23 109.8 65 76.9
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 1.1e-22 109.4 65 76.9
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 1.4e-22 109.0 65 76.9
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 4.2e-22 107.5 65 75.4
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 9.3e-22 106.3 65 72.3
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 1.2e-21 105.9 65 73.8
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 2.1e-21 105.1 65 73.8
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 2.7e-21 104.8 65 72.3
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 3.5e-21 104.4 65 73.8
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 3.5e-21 104.4 65 72.3
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 4.6e-21 104.0 65 73.8
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 7.9e-21 103.2 65 72.3
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 1.0e-20 102.8 65 72.3
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 1.0e-20 102.8 65 73.8
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 1.0e-20 102.8 65 72.3
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 3.0e-20 101.3 65 70.8
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.9e-20 100.9 65 72.3
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.9e-20 100.9 65 72.3
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 3.9e-20 100.9 65 72.3
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 3.9e-20 100.9 67 73.1
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 3.9e-20 100.9 65 72.3
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 5.1e-20 100.5 65 67.7
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 6.7e-20 100.1 66 69.7
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 8.7e-20 99.8 65 70.8
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 1.1e-19 99.4 65 69.2
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 1.5e-19 99.0 65 67.7
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 1.5e-19 99.0 65 69.2
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 1.5e-19 99.0 66 71.2
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 1.9e-19 98.6 65 72.3
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 3.3e-19 97.8 65 69.2
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 3.3e-19 97.8 66 69.7
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 3.3e-19 97.8 65 66.2
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 3.3e-19 97.8 64 73.4
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 3.3e-19 97.8 65 69.2
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 7.4e-19 96.7 65 70.8
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 7.4e-19 96.7 65 69.2
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 1.3e-18 95.9 65 69.2
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.3e-18 95.9 65 69.2
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 1.3e-18 95.9 65 67.7
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 1.6e-18 95.5 65 69.2
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 1.6e-18 95.5 65 66.2
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 2.8e-18 94.7 65 67.7
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 2.8e-18 94.7 65 67.7
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 2.8e-18 94.7 65 67.7
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 3.6e-18 94.4 65 67.7
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 3.6e-18 94.4 65 67.7
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 4.8e-18 94.0 65 66.2
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 1.1e-17 92.8 65 64.6
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 1.4e-17 92.4 65 66.2
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 1.4e-17 92.4 64 70.3
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 1.4e-17 92.4 65 61.5
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 1.8e-17 92.0 65 63.1
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 2.4e-17 91.7 65 67.7
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 3.1e-17 91.3 65 67.7
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 4.0e-17 90.9 65 64.6
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 4.0e-17 90.9 65 64.6
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 5.3e-17 90.5 65 66.2
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 5.3e-17 90.5 65 64.6
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 6.9e-17 90.1 65 63.1
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 2.6e-16 88.2 65 64.6
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 3.4e-16 87.8 65 64.6
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 4.5e-16 87.4 65 63.1
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 4.5e-16 87.4 65 56.9
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 9.9e-16 86.3 65 60.0
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 9.9e-16 86.3 65 58.5
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 1.7e-15 85.5 65 61.5
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 1.7e-15 85.5 65 60.0
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 4.9e-15 84.0 65 60.0
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 6.4e-15 83.6 64 57.8
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 6.4e-15 83.6 65 61.5
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 8.4e-15 83.2 65 56.9
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 1.4e-14 82.4 65 60.0
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 2.4e-14 81.6 65 52.3
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 1.3e-12 75.9 65 49.2
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 3.0e-12 74.7 65 53.8
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 3.0e-12 74.7 54 70.4
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 6.7e-12 73.6 65 52.3
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 1.1e-11 72.8 65 49.2
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 1.3e-10 69.3 65 52.3
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 4.8e-10 67.4 65 46.2
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 4.8e-10 67.4 65 50.8
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 8.2e-10 66.6 65 47.7
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 8.2e-10 66.6 65 46.2


User provided reference genes

Program Settings