Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 1.8e-249 865.5 463 100.0
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 3.1e-201 705.3 465 83.9
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 1.9e-153 546.6 469 68.0
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 1.5e-150 537.0 463 68.5
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 3.4e-123 446.0 448 58.3
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 3.7e-109 399.4 464 57.5
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 6.5e-106 388.7 414 53.9
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 1.9e-105 387.1 455 51.0
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 1.9e-105 387.1 411 55.2
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 2.5e-105 386.7 381 58.3
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 9.3e-105 384.8 368 57.9
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.3e-103 380.9 386 56.2
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 5.1e-103 379.0 395 55.7
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 6.7e-103 378.6 406 55.4
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 6.7e-103 378.6 388 55.4
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 8.7e-103 378.3 432 53.5
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 2.2e-101 373.6 385 56.1
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 1.8e-100 370.5 448 50.9
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 2.4e-100 370.2 401 55.9
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 2.4e-100 370.2 401 55.9
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 6.9e-100 368.6 391 56.0
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 1.3e-98 364.4 381 56.2
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.9e-98 363.2 382 55.5
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 3.8e-98 362.8 448 50.0
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 3.8e-98 362.8 395 54.7
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 1.1e-97 361.3 430 52.1
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 1.4e-97 360.9 430 52.1
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 1.4e-97 360.9 409 50.9
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 2.5e-97 360.1 394 54.6
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 7.2e-97 358.6 393 53.4
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 1.6e-96 357.5 430 51.4
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 2.1e-96 357.1 393 52.7
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 3.6e-96 356.3 430 51.9
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 3.6e-96 356.3 376 54.0
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 4.6e-96 355.9 430 51.4
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 6.1e-96 355.5 393 53.7
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 7.9e-96 355.1 430 51.2
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 3.9e-95 352.8 389 52.7
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 8.8e-95 351.7 392 53.1
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 2.6e-94 350.1 356 55.1
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 7.4e-94 348.6 402 52.2
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 8.2e-93 345.1 377 53.8
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 3.1e-92 343.2 394 51.8
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 3.1e-92 343.2 395 51.6
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 4.1e-92 342.8 343 57.1
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 5.3e-92 342.4 393 51.9
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 9.1e-92 341.7 434 48.6
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 9.1e-92 341.7 394 51.5
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.2e-91 341.3 390 52.3
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 3.4e-91 339.7 371 52.8
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 5.9e-91 339.0 399 50.6
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 1.7e-90 337.4 378 53.7
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 5.0e-90 335.9 387 52.5
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 1.2e-88 331.3 384 51.0
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 1.6e-88 330.9 388 50.3
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 4.7e-88 329.3 400 51.2
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 3.9e-87 326.2 376 47.9
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 1.5e-86 324.3 379 50.9
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 2.0e-86 323.9 370 51.1
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 1.3e-85 321.2 377 50.1
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 1.7e-85 320.9 403 48.9
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 4.8e-85 319.3 376 48.1
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 4.8e-85 319.3 399 49.1
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.1e-84 318.2 450 47.6
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 1.4e-84 317.8 390 49.0
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 2.4e-84 317.0 447 45.0
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 3.1e-84 316.6 450 47.8
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 4.1e-84 316.2 450 47.6
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 5.3e-84 315.8 433 46.7
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 9.1e-84 315.1 394 48.2
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 3.5e-83 313.2 562 43.6
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 4.5e-83 312.8 392 49.2
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 1.1e-81 308.1 363 50.1
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.1e-81 308.1 248 64.5
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 2.0e-78 297.4 405 46.2
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 2.6e-78 297.0 378 46.0
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 9.1e-76 288.5 393 44.5
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 1.0e-74 285.0 375 47.5
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 3.8e-74 283.1 301 53.5
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 2.3e-71 273.9 385 43.4
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 8.8e-71 271.9 403 41.9
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 2.0e-70 270.8 393 46.1
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 7.5e-70 268.9 387 46.3
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 1.4e-68 264.6 428 40.9
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 6.1e-64 249.2 371 41.2
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 2.3e-63 247.3 377 43.0
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 2.3e-63 247.3 364 43.4
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 1.6e-59 234.6 492 36.8
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 1.3e-58 231.5 330 48.5
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 1.5e-57 228.0 391 39.9
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 1.4e-55 221.5 361 39.6
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 3.0e-55 220.3 381 42.0
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 4.0e-55 219.9 381 42.0
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 4.9e-53 213.0 167 64.7
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 3.2e-52 210.3 171 63.7
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.2e-51 208.4 172 63.4
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 3.0e-50 203.8 311 42.1
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 7.5e-46 189.1 360 35.0
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 4.9e-45 186.4 362 36.2
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 7.0e-44 182.6 131 73.3
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.4e-36 156.4 86 90.7
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 9.2e-36 155.6 402 31.8
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 8.6e-34 149.1 357 31.9
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 9.2e-28 129.0 193 42.5
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 1.2e-27 128.6 86 77.9
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 9.6e-25 119.0 210 42.4
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.1e-23 115.5 207 39.6
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 1.8e-23 114.8 202 38.6
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 1.1e-20 105.5 83 69.9
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 1.0e-18 99.0 321 29.3
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 3.9e-18 97.1 340 29.1
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 3.9e-18 97.1 256 32.8
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 3.3e-17 94.0 75 61.3
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 4.3e-17 93.6 53 88.7
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 4.8e-16 90.1 46 93.5
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 1.1e-15 89.0 56 80.4
FAN05G5634 Fragaria x ananassa HOM05D010299 ORTHO05D019146 7.6e-14 82.8 127 44.9
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 7.6e-14 82.8 112 49.1
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 2.3e-10 71.2 290 26.2
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 3.0e-10 70.9 75 50.7
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 1.1e-09 68.9 175 33.7
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.5e-09 68.6 72 54.2
MCO09G632 Micromonas commoda HOM05D006262 ORTHO05D007266 6.2e-08 63.2 218 26.1
FvH4_5g28160 Fragaria vesca HOM05D017977 ORTHO05D007266 8.1e-08 62.8 92 41.3
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 2.4e-07 61.2 120 42.5


User provided reference genes

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