Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 1.3e-188 662.9 339 100.0
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 3.6e-122 442.2 325 70.8
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 2.0e-120 436.4 326 69.9
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.0e-117 424.9 316 71.5
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 3.0e-52 209.9 300 46.0
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 1.0e-44 184.9 303 39.9
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 3.0e-44 183.3 306 39.9
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 6.7e-44 182.2 290 39.7
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 8.8e-44 181.8 293 41.6
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-42 177.9 290 40.0
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.3e-42 177.9 290 40.0
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 3.7e-42 176.4 290 38.6
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 6.3e-42 175.6 291 39.9
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 1.4e-41 174.5 286 41.6
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 1.2e-40 171.4 296 39.9
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 1.2e-40 171.4 290 37.9
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 3.5e-40 169.9 291 38.8
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.0e-39 168.3 316 36.1
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 1.7e-39 167.5 307 38.8
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 2.2e-39 167.2 321 36.1
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 2.9e-39 166.8 294 38.8
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.9e-39 166.8 305 38.0
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.9e-39 166.8 288 38.9
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 8.5e-39 165.2 329 35.0
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 2.5e-38 163.7 307 38.1
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 5.5e-38 162.5 280 38.9
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 7.2e-38 162.2 330 35.5
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.2e-37 161.4 264 37.5
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 2.1e-37 160.6 337 34.7
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 4.7e-37 159.5 262 40.8
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 4.7e-37 159.5 290 37.6
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 6.1e-37 159.1 297 36.4
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 8.0e-37 158.7 319 37.3
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 1.4e-36 157.9 317 37.5
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 2.3e-36 157.1 285 39.3
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 3.0e-36 156.8 319 36.4
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 3.0e-36 156.8 329 38.0
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 4.0e-36 156.4 287 38.7
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 8.8e-36 155.2 309 36.2
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 8.8e-36 155.2 294 41.2
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.2e-35 154.8 290 35.5
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 1.5e-35 154.5 263 38.4
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.0e-35 154.1 292 37.0
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 2.6e-35 153.7 288 35.8
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 3.3e-35 153.3 296 35.8
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 2.2e-34 150.6 335 34.3
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 2.8e-34 150.2 283 36.4
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 2.8e-34 150.2 299 36.1
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 3.7e-34 149.8 308 34.7
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 4.8e-34 149.4 306 34.0
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 8.3e-34 148.7 296 35.5
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 1.4e-33 147.9 319 34.8
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.4e-33 147.1 304 34.9
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 2.4e-33 147.1 285 35.1
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 3.1e-33 146.7 285 35.8
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 4.1e-33 146.4 297 35.4
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.3e-33 146.0 318 34.9
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 5.3e-33 146.0 339 33.0
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 7.0e-33 145.6 231 44.2
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.2e-32 144.8 300 33.0
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.2e-32 144.8 297 35.0
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 2.7e-32 143.7 169 50.3
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 3.5e-32 143.3 320 34.4
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 3.5e-32 143.3 307 32.6
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 3.5e-32 143.3 304 34.5
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 5.9e-32 142.5 325 33.8
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 5.9e-32 142.5 291 34.0
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 5.9e-32 142.5 320 33.8
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 7.7e-32 142.1 306 34.6
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 1.0e-31 141.7 291 35.7
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.3e-31 141.4 286 36.4
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 1.3e-31 141.4 325 34.2
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 1.7e-31 141.0 320 33.4
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 1.1e-30 138.3 266 38.0
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 1.5e-30 137.9 278 36.0
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 1.9e-30 137.5 290 34.5
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 1.9e-30 137.5 288 36.5
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 2.5e-30 137.1 315 33.7
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 3.2e-30 136.7 286 37.4
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 4.2e-30 136.3 291 37.5
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 5.5e-30 136.0 311 34.1
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.5e-30 136.0 268 36.9
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 7.2e-30 135.6 265 36.6
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 9.4e-30 135.2 303 33.3
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 1.6e-29 134.4 263 39.2
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 2.1e-29 134.0 312 32.7
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 3.6e-29 133.3 311 33.1
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 4.7e-29 132.9 259 35.9
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 8.0e-29 132.1 283 33.6
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 1.0e-28 131.7 291 35.1
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.8e-28 131.0 264 33.3
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 3.0e-28 130.2 297 32.7
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 4.0e-28 129.8 344 31.1
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.2e-28 129.4 254 33.5
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 6.8e-28 129.0 310 30.6
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 8.8e-28 128.6 277 35.7
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 1.2e-27 128.3 280 36.1
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 2.0e-27 127.5 251 35.1
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.0e-27 127.5 314 32.8
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 2.0e-27 127.5 249 37.3
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 2.0e-27 127.5 338 32.2
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 3.4e-27 126.7 296 31.4
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 3.4e-27 126.7 265 35.1
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 3.4e-27 126.7 296 30.7
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 4.4e-27 126.3 245 35.1
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 5.7e-27 125.9 278 37.1
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 5.7e-27 125.9 314 31.2
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 9.8e-27 125.2 297 31.3
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 2.2e-26 124.0 312 33.0
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.8e-26 123.6 297 34.0
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 4.8e-26 122.9 254 32.7
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 8.3e-26 122.1 260 33.1
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 1.1e-25 121.7 308 29.2
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 1.1e-25 121.7 329 30.1
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.4e-25 121.3 306 32.7
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 1.8e-25 120.9 241 39.8
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 4.1e-25 119.8 260 33.1
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 4.1e-25 119.8 283 30.4
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 1.2e-24 118.2 259 33.2
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 5.9e-24 115.9 289 31.5
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 1.3e-23 114.8 256 30.1
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 1.7e-23 114.4 281 31.7
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 1.7e-23 114.4 260 33.5
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 2.3e-23 114.0 319 30.7
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 3.8e-23 113.2 304 28.3
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 3.8e-23 113.2 293 30.7
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 5.0e-23 112.8 252 31.3
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 5.0e-23 112.8 252 31.3
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 6.6e-23 112.5 252 31.3
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 8.6e-23 112.1 252 30.2
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 4.2e-22 109.8 261 31.8
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 4.2e-22 109.8 259 31.3
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 7.2e-22 109.0 260 30.4
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 9.5e-22 108.6 268 34.3
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 9.5e-22 108.6 255 30.6
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 1.2e-21 108.2 283 32.2
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.6e-21 107.8 259 32.8
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 2.1e-21 107.5 291 29.9
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 2.8e-21 107.1 314 28.3
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 3.6e-21 106.7 261 32.2
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 8.0e-21 105.5 260 30.8
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 1.8e-20 104.4 309 31.1
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 1.8e-20 104.4 254 31.5
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 3.0e-20 103.6 262 30.5
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 3.0e-20 103.6 273 33.3
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 4.0e-20 103.2 277 31.8
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 8.9e-20 102.1 85 61.2
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 1.2e-19 101.7 254 31.1
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 1.5e-19 101.3 290 29.3
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 3.4e-19 100.1 262 29.8
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 7.5e-19 99.0 261 30.3
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 4.9e-18 96.3 254 30.7
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 4.1e-17 93.2 257 30.0
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.4e-17 92.8 220 31.8
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 5.4e-17 92.8 264 29.5
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 7.0e-17 92.4 271 29.2
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 7.0e-17 92.4 319 30.7
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.2e-16 91.7 116 37.1
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 5.9e-16 89.4 276 27.9
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.9e-15 87.0 329 26.1
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 1.5e-14 84.7 118 39.8
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 7.3e-14 82.4 87 48.3
CBR_g19394 Chara braunii HOM05D003497 ORTHO05D003964 1.2e-13 81.6 106 41.5
FAN17G0318 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.4e-12 78.2 137 42.3
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 3.1e-12 77.0 331 26.3
PGR119G2181 Punica granatum HOM05D003497 ORTHO05D003964 4.0e-12 76.6 138 34.8
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 3.4e-11 73.6 172 32.0
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 3.4e-11 73.6 108 43.5
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 5.8e-11 72.8 124 33.1
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.9e-10 70.5 68 47.1
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 4.9e-10 69.7 77 48.1
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 1.4e-09 68.2 269 26.0
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.9e-09 67.8 101 36.6
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 3.2e-09 67.0 62 54.8
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 4.1e-09 66.6 86 44.2
Actinidia02442 Actinidia chinensis HOM05D003497 ORTHO05D003964 5.4e-09 66.2 80 37.5
Cre17.g738800 Chlamydomonas reinhardtii HOM05D003497 ORTHO05D003964 5.4e-09 66.2 112 32.1
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 6.0e-08 62.8 113 32.7
Potri.017G134500 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.0e-07 62.0 104 37.5
MCO07G198 Micromonas commoda HOM05D003497 ORTHO05D003964 1.1e-06 58.5 115 34.8
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 3.3e-06 57.0 217 25.3
FvH4_4g04631 Fragaria vesca HOM05D003497 ORTHO05D003964 5.6e-06 56.2 67 49.3
arahy.Tifrunner.gnm1.ann1.HH0ZDZ Arachis hypogaea HOM05D003497 ORTHO05D003964 9.5e-06 55.5 74 41.9


User provided reference genes

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