Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0407281 Rosa chinensis HOM05D000278 ORTHO05D039477 3.6e-24 114.0 54 100.0
FAN26G1581 Fragaria x ananassa HOM05D000278 ORTHO05D004371 4.7e-24 113.6 53 100.0
FAN23G2332 Fragaria x ananassa HOM05D000278 ORTHO05D004371 1.8e-23 111.7 52 100.0
RcHm_v2.0_Chr2g0098621 Rosa chinensis HOM05D000278 ORTHO05D004371 1.8e-23 111.7 52 100.0
RcHm_v2.0_Chr4g0409191 Rosa chinensis HOM05D000278 ORTHO05D004371 1.8e-23 111.7 52 100.0
RcHm_v2.0_Chr6g0270681 Rosa chinensis HOM05D000278 ORTHO05D004371 1.8e-23 111.7 52 100.0
EL10Ac7g16286 Beta vulgaris HOM05D000278 ORTHO05D004371 4.0e-23 110.5 53 96.2
COL.COLO4_16182 Corchorus olitorius HOM05D000278 ORTHO05D004371 4.0e-23 110.5 53 96.2
Solyc02g063090.3 Solanum lycopersicum HOM05D000278 ORTHO05D004371 5.2e-23 110.2 52 98.1
Sopen02g014170 Solanum pennellii HOM05D000278 ORTHO05D004371 5.2e-23 110.2 52 98.1
PGSC0003DMG400024180 Solanum tuberosum HOM05D000278 ORTHO05D004371 5.2e-23 110.2 52 98.1
Cpa.g.sc179.12 Carica papaya HOM05D000278 ORTHO05D004371 8.8e-23 109.4 53 94.3
MSTRG.5379 Avicennia marina HOM05D000278 ORTHO05D004371 1.2e-22 109.0 52 96.2
RcHm_v2.0_Chr2g0138531 Rosa chinensis HOM05D000278 ORTHO05D004371 1.2e-22 109.0 52 96.2
Hund20953 Selenicereus undatus HOM05D000278 ORTHO05D004371 1.2e-22 109.0 52 96.2
Actinidia26297 Actinidia chinensis HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Ah.01g008100 Amaranthus hybridus HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
ATR0665G149 Amborella trichopoda HOM05D000278 ORTHO05D004371 1.5e-22 108.6 53 94.3
CSS0001008 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
CSS0025301 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
CSS0032545 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
CANSAT64G2251 Cannabis sativa HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
CiPaw.04G040700 Carya illinoinensis HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Ca_04079_v3 Cicer arietinum L. HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Cc07_g08910 Coffea canephora HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Duzib133G0655 Durio zibethinus HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Duzib268G1391 Durio zibethinus HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
ECA246G0784 Erigeron canadensis HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Eucgr.F02483 Eucalyptus grandis HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
FvH4_1g11210 Fragaria vesca HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 98.1
FAN28G0885 Fragaria x ananassa HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 98.1
Gohir.A12G271300 Gossypium hirsutum HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Gohir.D12G271900 Gossypium hirsutum HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Gorai.008G292300 Gossypium raimondii HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Lj2C446G3 Lonicera japonica HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Lalb_Chr02g0158261 Lupinus albus HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
MBI10_g05705_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Nn3g17785 Nelumbo nucifera HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Nn4g23776 Nelumbo nucifera HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Nitab4.5_0001569g0040 Nicotiana tabacum HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Nitab4.5_0002288g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Oeu030779.1 Olea europaea HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Oeu052987.1 Olea europaea HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Os05g0147400 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
PSO017G1475 Papaver somniferum HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
PSO478G1705 Papaver somniferum HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Peaxi162Scf00518g00722 Petunia axillaris HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Phvul.008G004500 Phaseolus vulgaris HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
PGR004G1971 Punica granatum HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
QL02p051602 Quercus lobata HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
QL07p018371 Quercus lobata HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
SGA_v2.0_scaffold13G06449 Striga asiatica HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
SGA_v2.0_scaffold250G44997 Striga asiatica HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
THA.LOC104803003 Tarenaya hassleriana HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
THA.LOC104827154 Tarenaya hassleriana HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Thecc.03G064200 Theobroma cacao HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Thecc.04G136300 Theobroma cacao HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
TPR.G15574 Trifolium pratense HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
TPR.G9697 Trifolium pratense HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
VMungo1383G1335 Vigna mungo HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Zm00001eb111720 Zea mays HOM05D000278 ORTHO05D004371 1.5e-22 108.6 52 96.2
Peaxi162Scf00501g00127 Petunia axillaris HOM05D000278 ORTHO05D004371 2.0e-22 108.2 52 94.2
CAN.G625.1 Capsicum annuum HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
CiPaw.03G060500 Carya illinoinensis HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
ClCG11G005410 Citrullus lanatus HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Ciclev10011450m.g Citrus clementina HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
MELO3C022094.2 Cucumis melo HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
CsaV3_5G039190 Cucumis sativus L. HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Glyma.08G364000 Glycine max HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Hma1.2p1_0550F.1_g177310 Hydrangea macrophylla HOM05D000278 ORTHO05D004371 2.6e-22 107.8 53 92.5
MD17G1104900 Malus domestica HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Nitab4.5_0005737g0030 Nicotiana tabacum HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Nitab4.5_0005961g0020 Nicotiana tabacum HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Sed0004153 Sechium edule HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Solyc02g085790.3 Solanum lycopersicum HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
Sopen02g030480 Solanum pennellii HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
PGSC0003DMG400012675 Solanum tuberosum HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
GSVIVG01031067001 Vitis vinifera HOM05D000278 ORTHO05D004371 2.6e-22 107.8 52 94.2
DCAR_025918 Daucus carota HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
Dinv33932 Davidia involucrata HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
Dinv34840 Davidia involucrata HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
FAN19G3186 Fragaria x ananassa HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 96.2
Glyma.18G298100 Glycine max HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
Manes.01G108900 Manihot esculenta HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
Sc11g0008250 Simmondsia chinensis HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
TWI53G0964 Tripterygium wilfordii HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
TWI74G0032 Tripterygium wilfordii HOM05D000278 ORTHO05D004371 3.4e-22 107.5 52 94.2
AUR62001562 Chenopodium quinoa HOM05D000278 ORTHO05D004371 4.4e-22 107.1 52 94.2
AUR62020221 Chenopodium quinoa HOM05D000278 ORTHO05D004371 4.4e-22 107.1 52 94.2
Potri.004G101500 Populus trichocarpa HOM05D000278 ORTHO05D004371 4.4e-22 107.1 52 94.2
Potri.017G113601 Populus trichocarpa HOM05D000278 ORTHO05D004371 4.4e-22 107.1 52 94.2
Sabra04G0078800 Salix brachista HOM05D000278 ORTHO05D004371 4.4e-22 107.1 52 94.2
Aa31LG11G13540 Aethionema arabicum HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Aa31LG2G17130 Aethionema arabicum HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Aa31LG5G13030 Aethionema arabicum HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
ATR0564G545 Amborella trichopoda HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
AL3G11890 Arabidopsis lyrata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
AL6G26950 Arabidopsis lyrata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
AT3G02530 Arabidopsis thaliana HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
AT5G16070 Arabidopsis thaliana HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BcaB01g05006 Brassica carinata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BcaB01g05007 Brassica carinata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BcaB08g36884 Brassica carinata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BcaC04g18911 Brassica carinata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BcaC05g30369 Brassica carinata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BcaC05g30519 Brassica carinata HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
A03p07550 Brassica napus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
A05p44430 Brassica napus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
A10p22990 Brassica napus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
C03p08780 Brassica napus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
C09p60960 Brassica napus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
C09p75800 Brassica napus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BolC3t13374H Brassica oleracea HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BolC9t58943H Brassica oleracea HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BraA03t10083Z Brassica rapa HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BraA06t23298Z Brassica rapa HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
BraA10t44368Z Brassica rapa HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Carub.0003s0164 Capsella rubella HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Carub.0006s1426 Capsella rubella HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Carub.0055s0007 Capsella rubella HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
CARHR076530 Cardamine hirsuta HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
CARHR197240 Cardamine hirsuta HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Haze_14140 Corylus avellana HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 92.3
Thhalv10013205m.g Eutrema salsugineum HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Thhalv10020484m.g Eutrema salsugineum HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
HanXRQChr11g0324991 Helianthus annuus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
HanXRQChr14g0438721 Helianthus annuus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
HanXRQChr15g0483021 Helianthus annuus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Lsat_1_v5_gn_4_153000 Lactuca sativa HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Lalb_Chr06g0174641 Lupinus albus HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Medtr7g406870 Medicago truncatula HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Psat3g206440 Pisum sativum HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
SalBow5G3863 Salvia bowleyana HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 92.3
SalBow7G4677 Salvia bowleyana HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 92.3
Sp3g01560 Schrenkiella parvula HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
Sp6g28060 Schrenkiella parvula HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
vmacro05568 Vaccinium macrocarpon HOM05D000278 ORTHO05D004371 5.7e-22 106.7 52 94.2
CDE05G0458 Ceratophyllum demersum HOM05D000278 ORTHO05D004371 7.5e-22 106.3 52 94.2
Migut.L00307 Erythranthe guttata HOM05D000278 ORTHO05D004371 7.5e-22 106.3 52 92.3
MD09G1086000 Malus domestica HOM05D000278 ORTHO05D004371 7.5e-22 106.3 52 92.3
TAR374G0266 Trochodendron aralioides HOM05D000278 ORTHO05D004371 7.5e-22 106.3 52 92.3
BcaB08g34698 Brassica carinata HOM05D000278 ORTHO05D039477 9.8e-22 105.9 53 92.5
ECA232G3983 Erigeron canadensis HOM05D000278 ORTHO05D004371 9.8e-22 105.9 52 92.3
Oeu052986.1 Olea europaea HOM05D000278 ORTHO05D004371 9.8e-22 105.9 52 94.2
Prupe.3G238800 Prunus persica HOM05D000278 ORTHO05D004371 9.8e-22 105.9 52 94.2
Sabra17G0093800 Salix brachista HOM05D000278 ORTHO05D004371 9.8e-22 105.9 52 92.3
Manes.02G067400 Manihot esculenta HOM05D000278 ORTHO05D004371 1.3e-21 105.5 52 92.3
Cfa007938 Carpinus fangiana HOM05D000278 ORTHO05D004371 1.7e-21 105.1 52 90.4
Pp3c7_530 Physcomitrium patens HOM05D000278 ORTHO05D004371 1.7e-21 105.1 52 90.4
Rhsim10G0063000 Rhododendron simsii HOM05D000278 ORTHO05D004371 1.7e-21 105.1 52 92.3
Lj1g0008026 Lotus japonicus HOM05D000278 ORTHO05D004371 2.2e-21 104.8 52 92.3
Pp3c11_26000 Physcomitrium patens HOM05D000278 ORTHO05D004371 2.2e-21 104.8 52 90.4
SEGI_11536 Sequoiadendron giganteum HOM05D000278 ORTHO05D004371 2.2e-21 104.8 52 90.4
Lj4A194T33 Lonicera japonica HOM05D000278 ORTHO05D004371 2.8e-21 104.4 52 90.4
unitig_747.g21816 Utricularia gibba HOM05D000278 ORTHO05D004371 3.7e-21 104.0 52 92.3
Aqoxy3G03935 Aquilegia oxysepala HOM05D000278 ORTHO05D004371 8.3e-21 102.8 52 90.4
CDE05G1773 Ceratophyllum demersum HOM05D000278 ORTHO05D004371 8.3e-21 102.8 52 90.4
Atru.chr2.1903 Acer truncatum HOM05D000278 ORTHO05D004371 1.1e-20 102.4 52 90.4
Sed0012233 Sechium edule HOM05D000278 ORTHO05D004371 1.1e-20 102.4 52 90.4
arahy.Tifrunner.gnm1.ann1.WZBQ5A Arachis hypogaea HOM05D000278 ORTHO05D004371 1.8e-20 101.7 52 88.5
BcaB02g09203 Brassica carinata HOM05D000278 ORTHO05D004371 2.4e-20 101.3 55 89.1
CBR_g8264 Chara braunii HOM05D000278 ORTHO05D004371 5.4e-20 100.1 52 84.6
SMO301G0002 Selaginella moellendorffii HOM05D000278 ORTHO05D004371 7.0e-20 99.8 52 86.5
Actinidia15874 Actinidia chinensis HOM05D000278 ORTHO05D004371 1.6e-19 98.6 51 90.2
Mapoly0013s0040 Marchantia polymorpha HOM05D000278 ORTHO05D004371 1.6e-19 98.6 52 84.6
Cre09.g397200 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D004371 3.5e-19 97.4 52 82.7
AagrBONN_evm.TU.Sc2ySwM_344.2019 Anthoceros agrestis HOM05D000278 ORTHO05D004371 7.7e-19 96.3 52 80.8
ATR0564G541 Amborella trichopoda HOM05D000278 ORTHO05D004371 1.0e-18 95.9 53 86.8
CSS0036114 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D004371 3.3e-17 90.9 60 76.7
MCO16G095 Micromonas commoda HOM05D000278 ORTHO05D004371 9.5e-17 89.4 52 73.1
PRCOL_00000099 Prasinoderma coloniale HOM05D000278 ORTHO05D004371 2.3e-15 84.7 52 69.2
Cfa025875 Carpinus fangiana HOM05D000278 ORTHO05D004371 2.6e-14 81.3 52 69.2
FAN15G3534 Fragaria x ananassa HOM05D000278 ORTHO05D004371 1.3e-13 79.0 36 97.2
Haze_26204 Corylus avellana HOM05D000278 ORTHO05D004371 2.8e-13 77.8 52 61.5
Actinidia26321 Actinidia chinensis HOM05D000278 ORTHO05D004371 1.1e-12 75.9 35 97.1
TAR371G1168 Trochodendron aralioides HOM05D000278 ORTHO05D004371 9.2e-12 72.8 35 94.3
Rhsim10G0066200 Rhododendron simsii HOM05D000278 ORTHO05D004371 8.6e-10 66.2 49 67.3


User provided reference genes

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