Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 2.0e-71 274.6 679 100.0
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 3.3e-66 257.3 679 98.8
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 2.8e-57 227.6 121 90.9
FAN18G0104 Fragaria x ananassa HOM05D007595 ORTHO05D009570 6.2e-57 226.5 121 90.1
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.0e-51 209.1 115 88.7
MD07G1093100 Malus domestica HOM05D007595 ORTHO05D009570 5.7e-50 203.4 120 80.8
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 5.5e-45 186.8 100 94.0
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 2.6e-39 167.9 91 84.6
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 3.8e-38 164.1 94 79.8
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 8.8e-35 152.9 100 71.0
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 1.1e-34 152.5 91 73.6
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 1.4e-32 145.6 97 69.1
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 2.4e-32 144.8 91 74.7
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 1.2e-31 142.5 91 73.6
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 3.4e-31 141.0 91 73.6
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 1.7e-30 138.7 91 73.6
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.7e-30 138.7 115 56.5
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 2.9e-30 137.9 114 57.0
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 3.8e-30 137.5 94 68.1
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 5.0e-30 137.1 91 73.6
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 5.0e-30 137.1 111 61.3
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.1e-29 136.0 98 65.3
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 2.5e-29 134.8 93 66.7
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 3.2e-29 134.4 93 64.5
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 5.5e-29 133.7 112 57.1
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 1.2e-28 132.5 90 66.7
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 1.2e-28 132.5 94 67.0
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 1.2e-28 132.5 94 67.0
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 2.1e-28 131.7 94 67.0
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 2.7e-28 131.3 87 70.1
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 2.7e-28 131.3 91 65.9
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 3.6e-28 131.0 92 64.1
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 6.1e-28 130.2 89 66.3
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 1.0e-27 129.4 91 63.7
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 1.0e-27 129.4 91 67.0
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 1.4e-27 129.0 100 63.0
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 3.0e-27 127.9 88 69.3
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 3.9e-27 127.5 93 62.4
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 3.9e-27 127.5 91 68.1
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 5.1e-27 127.1 88 65.9
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 1.1e-26 125.9 83 72.3
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 1.1e-26 125.9 92 63.0
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 2.6e-26 124.8 91 63.7
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 2.6e-26 124.8 91 68.1
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 2.6e-26 124.8 85 65.9
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 3.3e-26 124.4 88 68.2
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 3.3e-26 124.4 92 63.0
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 1.3e-25 122.5 94 61.7
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 1.3e-25 122.5 84 65.5
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 1.7e-25 122.1 85 67.1
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 8.2e-25 119.8 89 62.9
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 1.8e-24 118.6 84 64.3
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 4.1e-24 117.5 88 60.2
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 7.0e-24 116.7 82 68.3
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 7.0e-24 116.7 82 63.4
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 7.0e-24 116.7 82 63.4
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 9.1e-24 116.3 116 50.0
Cpa.g.sc52.75 Carica papaya HOM05D007595 ORTHO05D009570 1.6e-23 115.5 90 58.9
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 3.5e-23 114.4 101 57.4
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 4.5e-23 114.0 88 60.2
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 1.3e-22 112.5 87 58.6
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 1.3e-22 112.5 78 69.2
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 2.9e-22 111.3 115 48.7
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 2.9e-22 111.3 87 58.6
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 3.8e-22 110.9 96 53.1
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 5.0e-22 110.5 89 57.3
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 6.5e-22 110.2 88 58.0
Sabra14G0039700 Salix brachista HOM05D007595 ORTHO05D009570 6.5e-22 110.2 82 59.8
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 8.5e-22 109.8 85 58.8
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 8.5e-22 109.8 85 58.8
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 1.1e-21 109.4 81 60.5
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 1.5e-21 109.0 81 59.3
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 2.5e-21 108.2 90 56.7
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 4.2e-21 107.5 115 47.0
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 4.2e-21 107.5 88 59.1
Solyc01g088670.3 Solanum lycopersicum HOM05D007595 ORTHO05D009570 5.5e-21 107.1 115 46.1
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 5.5e-21 107.1 115 46.1
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 7.2e-21 106.7 68 69.1
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 1.2e-20 105.9 84 60.7
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 6.1e-20 103.6 79 62.0
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 8.0e-20 103.2 84 57.1
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 1.0e-19 102.8 98 53.1
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.8e-19 102.1 115 45.2
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.8e-19 102.1 115 45.2
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 6.7e-19 100.1 115 45.2
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 8.8e-19 99.8 87 55.2
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 1.5e-18 99.0 115 45.2
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 6.3e-17 93.6 70 61.4
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 1.4e-16 92.4 115 40.9
Migut.I00272 Erythranthe guttata HOM05D007595 ORTHO05D009570 1.8e-16 92.0 92 47.8
Zm00001eb224150 Zea mays HOM05D011046 ORTHO05D013342 9.1e-16 89.7 102 42.2
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 1.6e-15 89.0 102 45.1
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 1.3e-14 85.9 104 45.2
Zm00001eb367370 Zea mays HOM05D011046 ORTHO05D013342 2.1e-12 78.6 102 37.3
ATR0665G577 Amborella trichopoda HOM05D007595 ORTHO05D009570 3.6e-12 77.8 102 37.3
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 1.5e-10 72.4 66 53.0
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 2.2e-09 68.6 100 43.0
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 6.3e-09 67.0 54 55.6
MD07G1092900 Malus domestica HOM05D007595 ORTHO05D009570 1.1e-08 66.2 39 74.4
Os10g0147250 Oryza sativa ssp. japonica HOM05D011046 ORTHO05D013342 2.4e-08 65.1 61 49.2
Zm00001eb210080 Zea mays HOM05D011046 ORTHO05D013342 3.5e-07 61.2 74 41.9
HPP92_014921 Vanilla planifolia HOM05D007595 ORTHO05D009570 1.0e-06 59.7 121 35.5
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 2.2e-06 58.5 96 31.2
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 6.5e-06 57.0 86 32.6


User provided reference genes

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