Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 0.0e+00 1454.9 743 100.0
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 0.0e+00 1121.7 768 76.7
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 0.0e+00 1105.5 768 76.3
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.1e-304 1049.7 752 75.0
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.7e-295 1018.5 768 72.3
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 4.4e-290 1001.1 792 69.9
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 3.3e-221 772.3 765 57.3
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 1.0e-193 681.0 661 58.2
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.0e-178 630.2 728 50.3
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 1.9e-168 597.0 731 47.9
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 9.2e-163 578.2 735 48.2
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 7.1e-155 552.0 728 45.6
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.2e-154 551.2 762 45.0
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.3e-152 543.1 729 43.8
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 4.3e-152 542.7 729 44.7
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 3.6e-151 539.7 727 44.2
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 8.1e-151 538.5 709 46.3
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 1.1e-147 528.1 734 44.1
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.3e-145 521.2 734 43.1
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 1.8e-145 520.8 725 43.4
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 2.3e-145 520.4 787 41.6
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 4.3e-144 516.2 871 38.6
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 4.8e-143 512.7 660 45.8
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 6.9e-142 508.8 729 41.4
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 9.0e-142 508.4 740 42.7
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 1.5e-141 507.7 766 42.0
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.0e-141 507.3 733 44.3
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.2e-138 498.0 756 41.5
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 2.7e-138 496.9 751 41.5
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 1.8e-137 494.2 727 42.0
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 2.3e-137 493.8 789 39.9
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 2.5e-136 490.3 726 41.3
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 2.4e-134 483.8 724 41.3
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 8.4e-132 475.3 729 40.6
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 1.1e-131 474.9 746 40.6
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 5.5e-131 472.6 682 43.4
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 7.1e-131 472.2 697 43.8
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.0e-129 468.4 800 37.8
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 1.8e-129 467.6 743 41.5
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.4e-126 458.0 725 42.6
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 1.7e-124 451.1 725 40.0
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.5e-124 449.1 736 40.2
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.4e-123 448.0 733 40.2
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 9.3e-123 445.3 727 40.0
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 7.9e-122 442.2 692 40.3
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 1.0e-121 441.8 731 40.2
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 5.1e-121 439.5 906 36.4
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 1.7e-119 434.5 695 39.9
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 6.3e-119 432.6 697 41.2
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 1.5e-117 427.9 460 52.2
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 5.9e-117 426.0 801 37.6
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 2.7e-114 417.2 730 37.7
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.6e-114 416.8 434 49.5
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 3.7e-111 406.8 634 39.0
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 2.6e-109 400.6 799 36.5
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 6.5e-108 396.0 797 36.6
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 3.6e-106 390.2 735 36.2
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 1.4e-105 388.3 655 37.7
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 5.2e-105 386.3 723 36.2
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.1e-104 385.2 844 34.7
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 2.6e-101 374.0 605 40.2
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 4.2e-99 366.7 722 34.8
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 4.0e-97 360.1 722 34.9
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 8.8e-97 359.0 779 35.3
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 8.8e-97 359.0 808 35.1
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 5.7e-96 356.3 719 36.7
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 7.0e-94 349.4 717 34.0
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 7.0e-94 349.4 758 33.9
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 1.2e-93 348.6 719 36.4
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.7e-93 347.4 734 36.2
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 2.2e-92 344.4 732 36.2
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 1.5e-91 341.7 717 35.6
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.2e-91 340.1 321 57.0
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 9.4e-91 339.0 777 32.6
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.7e-90 337.4 275 64.4
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 1.0e-89 335.5 719 33.5
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.3e-89 334.3 316 57.9
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 5.2e-89 333.2 731 33.9
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.8e-89 332.8 328 54.9
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 9.8e-88 328.9 733 36.0
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.2e-87 327.8 314 57.6
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 2.4e-86 324.3 718 33.8
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 9.1e-86 322.4 832 33.1
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 3.5e-85 320.5 716 33.9
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 1.0e-84 318.9 719 33.5
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 1.0e-84 318.9 317 53.0
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.3e-84 317.8 720 34.0
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 2.9e-84 317.4 721 33.4
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.6e-82 311.6 309 55.3
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 2.1e-82 311.2 732 33.2
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.3e-81 307.8 720 33.1
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 1.2e-80 305.4 341 47.8
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 4.9e-79 300.1 306 52.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 7.0e-78 296.2 314 49.4
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.5e-77 293.9 315 51.4
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 1.3e-76 292.0 741 31.7
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 3.3e-75 287.3 321 47.4
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.4e-73 282.0 841 29.3
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.8e-73 281.6 289 52.9
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 5.2e-73 280.0 763 31.8
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 2.0e-72 278.1 646 33.1
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.9e-71 274.2 730 31.5
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 4.9e-71 273.5 755 30.9
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 7.0e-70 269.6 307 51.1
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 2.0e-69 268.1 332 45.2
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 2.0e-69 268.1 760 30.1
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 2.3e-68 264.6 498 36.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 3.0e-68 264.2 281 50.5
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 5.0e-68 263.5 753 29.5
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.1e-67 262.3 268 54.5
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 4.3e-67 260.4 339 44.8
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 7.3e-67 259.6 720 31.9
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 2.3e-65 254.6 470 37.0
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 5.8e-64 250.0 339 43.4
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.7e-63 248.4 226 57.1
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 8.6e-60 236.1 314 45.5
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.8e-58 231.1 132 84.8
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 9.9e-56 222.6 770 28.3
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 9.9e-56 222.6 274 48.2
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.2e-53 215.7 652 30.2
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 7.8e-53 213.0 721 28.2
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 3.0e-52 211.1 220 50.0
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 5.1e-52 210.3 735 28.7
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 3.3e-51 207.6 276 44.9
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.7e-39 168.7 316 36.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.9e-39 167.9 190 50.0
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.9e-39 167.9 190 50.0
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 3.8e-39 167.5 601 28.1
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 8.4e-39 166.4 185 50.3
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.8e-33 148.7 335 34.6
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 2.4e-33 148.3 313 30.0
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 1.5e-32 145.6 311 34.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 7.6e-32 143.3 225 40.9
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 1.1e-30 139.4 531 26.6
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 2.3e-28 131.7 128 50.8
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 1.5e-27 129.0 120 58.3
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 2.4e-25 121.7 172 40.7
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 9.0e-25 119.8 174 40.8
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 1.5e-24 119.0 370 30.3
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 1.5e-24 119.0 229 34.9
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 7.6e-24 116.7 174 40.2
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 7.6e-24 116.7 171 40.9
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 2.9e-23 114.8 131 48.1
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 4.9e-23 114.0 193 36.8
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 6.4e-23 113.6 131 47.3
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 2.4e-22 111.7 120 43.3
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 4.2e-22 110.9 200 36.5
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 1.2e-21 109.4 158 41.8
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 3.9e-20 104.4 170 40.6
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.7e-15 89.0 141 41.1
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 5.5e-14 84.0 158 39.2
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 7.9e-13 80.1 259 29.0
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 1.5e-11 75.9 128 32.8
SEGI_15340 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 2.6e-08 65.1 95 37.9
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 3.4e-08 64.7 186 31.7
MBI08_g23496_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 2.9e-07 61.6 47 63.8
QL93p0319_0003 Quercus lobata HOM05D000002 ORTHO05D000001 2.9e-07 61.6 45 66.7
Migut.C00084 Erythranthe guttata HOM05D042229 ORTHO05D035173 2.5e-06 58.5 66 40.9
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 2.5e-06 58.5 57 50.9
Migut.E00887 Erythranthe guttata HOM05D042229 ORTHO05D035173 7.2e-06 57.0 61 45.9


User provided reference genes

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