Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.4e-181 639.4 317 100.0
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 3.3e-77 292.7 155 91.6
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 5.7e-61 238.8 159 72.3
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 2.4e-59 233.4 149 76.5
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.3e-57 227.6 115 89.6
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 6.5e-57 225.3 159 69.8
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 1.6e-55 220.7 159 67.9
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 4.6e-55 219.2 159 67.3
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 1.4e-54 217.6 157 66.9
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 2.3e-54 216.9 142 71.1
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.1e-53 214.5 152 69.7
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 1.3e-52 211.1 188 55.9
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 2.2e-52 210.3 207 52.7
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 4.8e-52 209.1 159 64.2
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 6.3e-52 208.8 166 61.4
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 1.8e-51 207.2 170 56.5
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 2.4e-51 206.8 153 66.7
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 3.1e-51 206.5 202 52.5
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 3.1e-51 206.5 157 62.4
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 5.3e-51 205.7 155 63.9
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 1.2e-50 204.5 156 63.5
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.5e-50 204.1 153 66.0
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 1.5e-50 204.1 153 66.0
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.5e-50 204.1 128 68.8
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.5e-50 204.1 128 68.8
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 2.0e-50 203.8 146 65.1
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 2.6e-50 203.4 158 63.3
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 3.4e-50 203.0 155 61.3
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 5.9e-50 202.2 158 60.1
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 5.9e-50 202.2 171 55.6
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 1.0e-49 201.4 151 64.9
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 1.0e-49 201.4 156 60.9
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 1.0e-49 201.4 155 63.2
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 2.2e-49 200.3 161 55.9
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 2.2e-49 200.3 144 65.3
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 2.2e-49 200.3 144 65.3
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 2.2e-49 200.3 155 60.6
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 2.9e-49 199.9 171 55.0
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 3.8e-49 199.5 134 64.2
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 5.0e-49 199.1 150 62.7
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 6.5e-49 198.7 136 66.2
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 8.5e-49 198.4 170 53.5
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 1.9e-48 197.2 193 55.4
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 2.5e-48 196.8 207 50.2
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 3.2e-48 196.4 143 64.3
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 3.2e-48 196.4 149 62.4
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 3.2e-48 196.4 158 57.6
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 4.2e-48 196.1 164 59.8
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 7.2e-48 195.3 149 56.4
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 7.2e-48 195.3 157 61.1
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 9.4e-48 194.9 145 56.6
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 1.2e-47 194.5 170 52.9
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 1.2e-47 194.5 151 61.6
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 1.2e-47 194.5 130 64.6
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.6e-47 194.1 148 62.2
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 1.6e-47 194.1 170 52.9
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 2.1e-47 193.7 130 68.5
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 2.7e-47 193.4 158 58.9
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 3.6e-47 193.0 170 52.4
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 4.7e-47 192.6 170 51.8
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 1.0e-46 191.4 151 59.6
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 1.0e-46 191.4 151 59.6
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.0e-46 191.4 150 59.3
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 1.4e-46 191.0 152 59.9
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 3.0e-46 189.9 118 70.3
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 5.2e-46 189.1 148 60.1
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 6.7e-46 188.7 153 59.5
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 3.3e-45 186.4 153 60.8
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 3.3e-45 186.4 141 60.3
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 2.2e-44 183.7 154 57.8
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 2.8e-44 183.3 153 56.9
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 6.3e-44 182.2 206 48.5
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.1e-43 181.4 129 65.1
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 1.1e-43 181.4 132 63.6
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 1.8e-43 180.6 141 58.2
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 1.8e-43 180.6 153 54.9
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 3.1e-43 179.9 130 61.5
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.2e-42 177.9 145 57.2
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 1.2e-42 177.9 154 58.4
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 1.2e-42 177.9 153 56.9
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 1.2e-42 177.9 146 56.2
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 2.6e-42 176.8 173 53.8
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 2.6e-42 176.8 154 55.2
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 5.9e-42 175.6 143 55.9
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 1.0e-41 174.9 141 56.0
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 6.5e-41 172.2 146 55.5
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 8.5e-41 171.8 105 76.2
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 2.5e-40 170.2 135 58.5
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 2.7e-34 150.2 136 52.9
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 2.9e-33 146.7 107 61.7
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 4.2e-32 142.9 155 47.7
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 2.1e-31 140.6 102 60.8
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 1.4e-30 137.9 122 50.0
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 1.4e-30 137.9 111 53.2
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 5.7e-29 132.5 123 48.0
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 8.3e-28 128.6 177 37.9
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 6.3e-20 102.4 78 61.5
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 4.3e-16 89.7 145 37.9
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 5.2e-14 82.8 55 60.0
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 2.0e-13 80.9 55 74.5
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 5.4e-11 72.8 112 36.6
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 2.7e-10 70.5 59 50.8
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 5.9e-10 69.3 53 54.7
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 5.9e-10 69.3 105 41.0
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 3.9e-09 66.6 71 54.9
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.5e-08 64.7 49 63.3
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.5e-08 64.7 49 63.3
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 4.3e-08 63.2 146 28.1
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 4.3e-08 63.2 50 64.0
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 1.2e-07 61.6 37 62.2
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 1.6e-07 61.2 52 57.7


User provided reference genes

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