Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 1.9e-77 292.4 139 100.0
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 3.0e-30 135.6 62 98.4
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 6.6e-30 134.4 62 96.8
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 1.1e-27 127.1 70 84.3
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 5.2e-27 124.8 69 82.6
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 8.9e-27 124.0 70 81.4
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 2.6e-26 122.5 62 85.5
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 1.3e-25 120.2 62 83.9
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 1.3e-25 120.2 62 83.9
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 1.7e-25 119.8 74 73.0
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 2.2e-25 119.4 70 77.1
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 2.9e-25 119.0 70 77.1
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 2.9e-25 119.0 62 83.9
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 2.9e-25 119.0 62 83.9
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 2.9e-25 119.0 62 83.9
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 2.9e-25 119.0 70 75.7
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 3.7e-25 118.6 62 82.3
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 6.4e-25 117.9 62 83.9
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 6.4e-25 117.9 61 82.0
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 6.4e-25 117.9 73 68.5
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 8.4e-25 117.5 62 82.3
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 1.4e-24 116.7 62 79.0
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 1.4e-24 116.7 62 80.6
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 1.4e-24 116.7 62 80.6
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 1.4e-24 116.7 62 82.3
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.9e-24 116.3 62 80.6
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 2.4e-24 115.9 62 80.6
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 2.4e-24 115.9 62 80.6
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 2.4e-24 115.9 62 80.6
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 3.2e-24 115.5 62 82.3
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 4.1e-24 115.2 62 80.6
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 4.1e-24 115.2 65 80.0
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 5.4e-24 114.8 62 79.0
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 5.4e-24 114.8 69 75.4
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 7.1e-24 114.4 62 80.6
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 9.2e-24 114.0 62 79.0
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 9.2e-24 114.0 62 79.0
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 9.2e-24 114.0 62 79.0
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 9.2e-24 114.0 62 80.6
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 1.2e-23 113.6 62 82.3
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 2.1e-23 112.8 62 79.0
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 2.1e-23 112.8 62 79.0
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 2.1e-23 112.8 62 79.0
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 2.1e-23 112.8 70 74.3
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 2.7e-23 112.5 62 80.6
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 3.5e-23 112.1 62 80.6
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 3.5e-23 112.1 62 80.6
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 3.5e-23 112.1 62 80.6
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 3.5e-23 112.1 62 80.6
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 4.6e-23 111.7 62 79.0
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 7.8e-23 110.9 62 79.0
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 7.8e-23 110.9 62 79.0
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 1.0e-22 110.5 62 74.2
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 1.0e-22 110.5 62 77.4
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.0e-22 110.5 62 74.2
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.0e-22 110.5 62 74.2
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 1.3e-22 110.2 62 75.8
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 1.7e-22 109.8 62 75.8
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 2.3e-22 109.4 69 71.0
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 2.3e-22 109.4 60 76.7
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 3.0e-22 109.0 62 74.2
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 3.0e-22 109.0 62 75.8
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 3.9e-22 108.6 62 77.4
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 5.1e-22 108.2 62 72.6
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 6.6e-22 107.8 62 74.2
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 8.6e-22 107.5 65 73.8
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 8.6e-22 107.5 65 73.8
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 8.6e-22 107.5 62 74.2
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 8.6e-22 107.5 62 74.2
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 1.5e-21 106.7 62 72.6
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 1.5e-21 106.7 62 72.6
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 1.9e-21 106.3 62 72.6
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 3.3e-21 105.5 62 72.6
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 5.6e-21 104.8 59 79.7
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 8.1e-20 100.9 62 69.4
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 1.8e-19 99.8 62 69.4
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 8.9e-19 97.4 62 67.7
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 2.6e-18 95.9 62 71.0
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 4.2e-16 88.6 67 59.7
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 2.1e-15 86.3 82 46.3
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 2.7e-15 85.9 62 59.7
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 3.5e-15 85.5 47 78.7
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 7.8e-15 84.3 64 50.0
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 1.5e-10 70.1 32 96.9
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 1.1e-08 63.9 42 66.7
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 4.2e-08 62.0 31 87.1
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 9.3e-08 60.8 31 80.6
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 1.2e-07 60.5 34 73.5
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 1.6e-07 60.1 40 67.5
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.6e-07 60.1 31 80.6
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.6e-07 60.1 31 80.6
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 1.6e-07 60.1 31 80.6
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 2.7e-07 59.3 31 74.2
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.5e-07 58.9 32 78.1
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 3.5e-07 58.9 32 78.1
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 4.6e-07 58.5 40 70.0
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 6.0e-07 58.2 45 60.0
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 7.9e-07 57.8 31 74.2
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 1.7e-06 56.6 45 60.0
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 2.3e-06 56.2 31 71.0
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 6.6e-06 54.7 35 68.6


User provided reference genes

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