Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.9e-279 964.5 470 100.0
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.3e-214 748.4 446 82.7
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 4.7e-213 744.6 446 82.5
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.4e-211 738.4 446 81.8
MD04G1044900 Malus domestica HOM05D001043 ORTHO05D006432 1.6e-181 639.8 445 71.2
Duzib212G0937 Durio zibethinus HOM05D001043 ORTHO05D006432 1.5e-179 633.3 448 67.4
Cfa015192 Carpinus fangiana HOM05D001043 ORTHO05D006432 1.4e-177 626.7 442 67.9
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 1.2e-176 623.6 447 66.4
QL10p050774 Quercus lobata HOM05D001043 ORTHO05D006432 1.9e-174 616.3 444 67.8
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.3e-173 613.6 460 65.2
Cpa.g.sc9.315 Carica papaya HOM05D001043 ORTHO05D006432 2.1e-173 612.8 445 67.6
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.8e-172 609.8 445 66.5
Haze_01462 Corylus avellana HOM05D001043 ORTHO05D006432 5.3e-172 608.2 475 63.4
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 7.6e-171 604.4 445 65.2
Eucgr.H00342 Eucalyptus grandis HOM05D001043 ORTHO05D006432 4.2e-169 598.6 445 64.0
SalBow3G3815 Salvia bowleyana HOM05D001043 ORTHO05D006432 2.1e-168 596.3 445 63.8
Peaxi162Scf00180g00029 Petunia axillaris HOM05D001043 ORTHO05D006432 4.6e-168 595.1 445 63.4
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 1.0e-167 594.0 445 64.3
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.0e-167 594.0 445 65.4
Oeu022683.1 Olea europaea HOM05D001043 ORTHO05D006432 3.0e-167 592.4 445 62.9
CANSAT78G0880 Cannabis sativa HOM05D001043 ORTHO05D006432 3.9e-167 592.0 447 64.9
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.9e-167 592.0 445 63.8
Duzib268G1183 Durio zibethinus HOM05D001043 ORTHO05D006432 2.5e-166 589.3 451 64.7
CAN.G136.20 Capsicum annuum HOM05D001043 ORTHO05D006432 5.6e-166 588.2 445 62.5
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.3e-165 587.0 443 63.9
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 2.1e-165 586.3 490 60.8
arahy.Tifrunner.gnm1.ann1.41HRQM Arachis hypogaea HOM05D001043 ORTHO05D006432 2.8e-165 585.9 445 61.6
arahy.Tifrunner.gnm1.ann1.AV1GYT Arachis hypogaea HOM05D001043 ORTHO05D006432 2.4e-164 582.8 445 61.1
Oeu027753.1 Olea europaea HOM05D001043 ORTHO05D006432 3.1e-164 582.4 445 63.4
Dinv44154 Davidia involucrata HOM05D001043 ORTHO05D006432 2.0e-163 579.7 429 67.4
THA.LOC104800885 Tarenaya hassleriana HOM05D001043 ORTHO05D006432 2.0e-163 579.7 445 62.5
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.6e-163 579.3 443 63.0
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.6e-163 579.3 445 63.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.8e-163 578.2 445 64.9
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.2e-162 576.2 445 63.1
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 2.2e-162 576.2 447 63.3
Sopen06g018400 Solanum pennellii HOM05D001043 ORTHO05D006432 1.1e-161 573.9 445 61.1
PGSC0003DMG400016341 Solanum tuberosum HOM05D001043 ORTHO05D006432 1.1e-161 573.9 445 61.3
SGA_v2.0_scaffold12G06170 Striga asiatica HOM05D001043 ORTHO05D006432 1.4e-161 573.5 457 60.6
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.9e-161 573.2 446 61.9
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 2.5e-161 572.8 445 62.2
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 9.3e-161 570.9 445 63.4
Prupe.1G197800 Prunus persica HOM05D001043 ORTHO05D006432 9.3e-161 570.9 384 72.7
Sed0013039 Sechium edule HOM05D001043 ORTHO05D006432 9.3e-161 570.9 445 63.4
MSTRG.9754 Avicennia marina HOM05D001043 ORTHO05D006432 1.2e-160 570.5 445 60.0
Actinidia27085 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.7e-160 569.3 445 62.7
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.5e-160 568.9 446 66.6
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.6e-160 568.5 453 60.5
Solyc06g053340.3 Solanum lycopersicum HOM05D001043 ORTHO05D006432 1.3e-159 567.0 445 60.4
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.1e-158 563.9 447 62.4
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.5e-158 562.8 447 62.9
Lj3g0012550 Lotus japonicus HOM05D001043 ORTHO05D006432 2.5e-158 562.8 446 61.7
Lalb_Chr01g0003101 Lupinus albus HOM05D001043 ORTHO05D006432 5.7e-158 561.6 443 61.4
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 7.4e-158 561.2 445 62.0
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 6.3e-157 558.1 448 62.1
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 6.3e-157 558.1 445 60.7
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 8.2e-157 557.8 448 62.3
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.1e-156 555.4 446 61.0
Cc03_g12190 Coffea canephora HOM05D001043 ORTHO05D006432 1.5e-155 553.5 444 61.0
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 3.4e-155 552.4 449 60.4
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 7.7e-155 551.2 446 61.4
TPR.G34197 Trifolium pratense HOM05D001043 ORTHO05D006432 5.0e-154 548.5 447 59.7
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 6.5e-154 548.1 451 59.6
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 6.5e-154 548.1 443 60.0
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 3.2e-153 545.8 443 59.6
Glyma.11G126500 Glycine max HOM05D001043 ORTHO05D006432 7.2e-153 544.7 421 62.2
Lj3A0G11 Lonicera japonica HOM05D001043 ORTHO05D006432 2.1e-152 543.1 419 62.5
Lsat_1_v5_gn_3_125361 Lactuca sativa HOM05D001043 ORTHO05D006432 7.9e-152 541.2 447 60.6
Sc19g0002850 Simmondsia chinensis HOM05D001043 ORTHO05D006432 1.0e-151 540.8 454 58.6
TAR365G1116 Trochodendron aralioides HOM05D001043 ORTHO05D006432 1.8e-151 540.0 445 58.9
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 2.3e-151 539.7 447 60.0
Ca_20798_v3 Cicer arietinum L. HOM05D001043 ORTHO05D006432 3.0e-151 539.3 448 59.2
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 3.0e-151 539.3 445 61.1
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.9e-151 538.9 445 59.8
MELO3C006795.2 Cucumis melo HOM05D001043 ORTHO05D006432 5.7e-150 535.0 445 61.1
A08p36110 Brassica napus HOM05D001043 ORTHO05D006432 1.8e-148 530.0 445 59.1
BraA08t35518Z Brassica rapa HOM05D001043 ORTHO05D006432 1.8e-148 530.0 445 59.1
C08p02400 Brassica napus HOM05D001043 ORTHO05D006432 6.9e-148 528.1 446 59.2
BolC8t47032H Brassica oleracea HOM05D001043 ORTHO05D006432 6.9e-148 528.1 446 59.2
Aa31LG1G7110 Aethionema arabicum HOM05D001043 ORTHO05D006432 8.5e-146 521.2 460 57.2
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 9.4e-145 517.7 441 56.7
Dinv05076 Davidia involucrata HOM05D001043 ORTHO05D006432 2.1e-144 516.5 366 69.4
Aqoxy5G00006 Aquilegia oxysepala HOM05D001043 ORTHO05D006432 3.6e-144 515.8 445 58.7
CsaV3_3G015970 Cucumis sativus L. HOM05D001043 ORTHO05D006432 1.4e-143 513.8 402 63.9
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.4e-142 508.8 420 61.9
EL10Ac3g06009 Beta vulgaris HOM05D001043 ORTHO05D006432 5.7e-142 508.4 450 55.6
SalBow3G1676 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-140 503.8 366 65.6
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.2e-139 500.7 448 54.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.2e-136 490.7 448 53.6
CDE07G0303 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 1.4e-135 487.3 444 52.7
Rhsim02G0082200 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.7e-133 480.3 444 56.1
Rhsim02G0082300 Rhododendron simsii HOM05D001043 ORTHO05D006432 1.7e-133 480.3 439 56.9
GSVIVG01010840001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.8e-132 476.9 444 55.0
Ah.04g153480 Amaranthus hybridus HOM05D001043 ORTHO05D006432 5.3e-132 475.3 445 52.4
ATR0743G191 Amborella trichopoda HOM05D001043 ORTHO05D006432 5.3e-132 475.3 444 52.9
Hma1.2p1_2415F.1_g321720 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 9.1e-132 474.6 383 61.6
BcaC05g24309 Brassica carinata HOM05D001043 ORTHO05D006432 1.2e-131 474.2 446 54.9
C05p04390 Brassica napus HOM05D001043 ORTHO05D006432 1.2e-131 474.2 446 54.9
BolC5t29212H Brassica oleracea HOM05D001043 ORTHO05D006432 1.2e-131 474.2 446 54.9
Phvul.011G053400 Phaseolus vulgaris HOM05D001043 ORTHO05D006432 2.0e-131 473.4 383 60.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.1e-129 467.6 368 64.4
SHI29125 Sapria himalayana HOM05D001043 ORTHO05D006432 2.5e-129 466.5 455 52.5
Psat7g209600 Pisum sativum HOM05D001043 ORTHO05D006432 1.2e-128 464.2 382 58.9
Os11g0265200 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 7.5e-126 454.9 447 52.6
Migut.G01345 Erythranthe guttata HOM05D001043 ORTHO05D006432 7.0e-124 448.4 390 55.6
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 8.5e-122 441.4 444 52.9
BcaB02g06824 Brassica carinata HOM05D001043 ORTHO05D006432 3.2e-121 439.5 449 52.1
HPP92_004532 Vanilla planifolia HOM05D001043 ORTHO05D006432 2.1e-120 436.8 463 50.8
HPP92_004523 Vanilla planifolia HOM05D001043 ORTHO05D006432 4.8e-117 425.6 458 50.4
SalBow3G2442 Salvia bowleyana HOM05D001043 ORTHO05D006432 1.4e-116 424.1 315 64.1
Actinidia26504 Actinidia chinensis HOM05D001043 ORTHO05D006432 2.4e-108 396.7 418 50.5
MBI11_g10483_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 1.2e-107 394.4 418 50.0
DCAR_028429 Daucus carota HOM05D001043 ORTHO05D006432 6.4e-101 372.1 309 60.5
BraA10t42737Z Brassica rapa HOM05D001043 ORTHO05D006432 5.4e-100 369.0 447 47.0
HanXRQChr09g0262091 Helianthus annuus HOM05D001043 ORTHO05D006432 8.0e-96 355.1 309 59.2
Pp3c5_14310 Physcomitrium patens HOM05D001043 ORTHO05D006432 4.4e-94 349.4 444 42.1
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 2.9e-93 346.7 232 72.0
Zm00001eb168760 Zea mays HOM05D001043 ORTHO05D006432 1.9e-92 344.0 446 42.2
Ciclev10023406m.g Citrus clementina HOM05D001043 ORTHO05D006432 3.9e-90 336.3 371 50.4
CDE04G0865 Ceratophyllum demersum HOM05D001043 ORTHO05D006432 3.6e-88 329.7 438 42.2
A10p04730 Brassica napus HOM05D001043 ORTHO05D006432 1.8e-87 327.4 447 44.5
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 8.9e-87 325.1 436 42.7
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 6.4e-85 318.9 418 41.1
COL.COLO4_10086 Corchorus olitorius HOM05D001043 ORTHO05D006432 2.5e-81 307.0 393 45.3
Os11g0264700 Oryza sativa ssp. japonica HOM05D001043 ORTHO05D006432 6.2e-80 302.4 462 40.0
Lj3A33G11 Lonicera japonica HOM05D001043 ORTHO05D006432 6.8e-79 298.9 245 58.4
Hma1.2p1_1466F.1_g285390 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 1.5e-70 271.2 268 54.1
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.4e-70 269.6 184 70.1
Rhsim02G0082000 Rhododendron simsii HOM05D000432 ORTHO05D000320 2.5e-65 253.8 310 45.8
Cre01.g005900 Chlamydomonas reinhardtii HOM05D001043 ORTHO05D006432 2.1e-56 224.2 486 31.9
CBR_g726 Chara braunii HOM05D001043 ORTHO05D006432 1.8e-55 221.1 509 31.2
CiPaw.02G052100 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.7e-53 214.5 146 67.1
Lj3A33G10 Lonicera japonica HOM05D001043 ORTHO05D006432 1.8e-50 204.5 144 66.7
SEGI_03011 Sequoiadendron giganteum HOM05D001043 ORTHO05D006432 1.7e-32 144.8 137 52.6
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.1e-31 142.1 484 28.1
HanXRQChr09g0262081 Helianthus annuus HOM05D001043 ORTHO05D006432 1.6e-27 128.3 102 55.9
HanXRQChr09g0250561 Helianthus annuus HOM05D001043 ORTHO05D006432 1.4e-26 125.2 92 65.2
DCAR_028430 Daucus carota HOM05D001043 ORTHO05D006432 2.1e-19 101.3 100 50.0
PGR142G2310 Punica granatum HOM05D001043 ORTHO05D006432 2.0e-17 94.7 72 56.9
MCO09G831 Micromonas commoda HOM05D001043 ORTHO05D006432 1.6e-14 85.1 397 25.9
HanXRQChr12g0370191 Helianthus annuus HOM05D001043 ORTHO05D006432 3.4e-09 67.4 69 46.4
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.8e-08 63.5 123 35.8
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 8.3e-08 62.8 173 32.4
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 8.3e-08 62.8 173 32.4
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 8.3e-08 62.8 112 35.7
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.4e-07 62.0 136 32.4
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 9.1e-07 59.3 112 35.7
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 3.5e-06 57.4 112 33.9
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 4.5e-06 57.0 112 33.9


User provided reference genes

Program Settings