Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0406391 Rosa chinensis HOM05D006283 ORTHO05D007727 9.2e-161 570.1 271 100.0
FvH4_4g10770 Fragaria vesca HOM05D006283 ORTHO05D007727 7.6e-139 497.3 266 89.5
Prupe.1G192800 Prunus persica HOM05D006283 ORTHO05D007727 3.8e-138 495.0 275 84.7
MD04G1040100 Malus domestica HOM05D006283 ORTHO05D007727 9.6e-134 480.3 274 82.8
Manes.11G120300 Manihot esculenta HOM05D006283 ORTHO05D007727 3.6e-125 451.8 264 78.8
FAN12G2405 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.1e-124 448.7 266 81.6
Atru.chr3.1494 Acer truncatum HOM05D006283 ORTHO05D007727 4.0e-124 448.4 275 76.4
CiPaw.02G054900 Carya illinoinensis HOM05D006283 ORTHO05D007727 1.9e-121 439.5 275 74.9
Potri.019G051300 Populus trichocarpa HOM05D006283 ORTHO05D007727 1.6e-120 436.4 269 77.0
Thecc.04G180000 Theobroma cacao HOM05D006283 ORTHO05D007727 2.1e-120 436.0 275 74.5
Ciclev10021635m.g Citrus clementina HOM05D006283 ORTHO05D007727 6.0e-120 434.5 273 74.0
CANSAT78G1066 Cannabis sativa HOM05D006283 ORTHO05D007727 7.9e-120 434.1 269 76.2
Dinv22729 Davidia involucrata HOM05D006283 ORTHO05D007727 7.9e-120 434.1 269 75.5
Gohir.D10G129700 Gossypium hirsutum HOM05D006283 ORTHO05D007727 5.1e-119 431.4 275 73.5
Gorai.011G143000 Gossypium raimondii HOM05D006283 ORTHO05D007727 5.1e-119 431.4 275 73.5
Gohir.A10G137000 Gossypium hirsutum HOM05D006283 ORTHO05D007727 8.7e-119 430.6 275 73.1
TAR362G0864 Trochodendron aralioides HOM05D006283 ORTHO05D007727 2.5e-118 429.1 273 73.3
Eucgr.H00372 Eucalyptus grandis HOM05D006283 ORTHO05D007727 5.6e-118 427.9 273 72.5
TPR.G34200 Trifolium pratense HOM05D006283 ORTHO05D007727 2.8e-117 425.6 274 72.3
Cc03_g13090 Coffea canephora HOM05D006283 ORTHO05D007727 8.1e-117 424.1 271 73.1
Glyma.11G127900 Glycine max HOM05D006283 ORTHO05D007727 8.1e-117 424.1 265 74.0
Ca_20784_v3 Cicer arietinum L. HOM05D006283 ORTHO05D007727 1.1e-116 423.7 249 76.7
Phvul.011G054600 Phaseolus vulgaris HOM05D006283 ORTHO05D007727 1.8e-116 422.9 265 74.0
Actinidia35975 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.2e-115 420.2 269 73.6
TWI15G0224 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.5e-115 419.9 259 72.6
TWI15G1054 Tripterygium wilfordii HOM05D006283 ORTHO05D007727 1.5e-115 419.9 259 72.6
PSO675G6362 Papaver somniferum HOM05D006283 ORTHO05D007727 3.4e-115 418.7 264 72.7
VMungo1127G0333 Vigna mungo HOM05D006283 ORTHO05D007727 5.8e-115 417.9 268 72.8
PSO017G4585 Papaver somniferum HOM05D006283 ORTHO05D007727 1.3e-114 416.8 264 72.3
Hma1.2p1_0847F.1_g227833 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 2.2e-114 416.0 245 76.3
GSVIVG01010753001 Vitis vinifera HOM05D006283 ORTHO05D007727 2.2e-114 416.0 274 72.6
MELO3C017715.2 Cucumis melo HOM05D006283 ORTHO05D007727 2.9e-114 415.6 272 71.7
Migut.N02075 Erythranthe guttata HOM05D006283 ORTHO05D007727 2.9e-114 415.6 269 71.4
AL5G41290 Arabidopsis lyrata HOM05D006283 ORTHO05D007727 3.8e-114 415.2 273 69.6
CsaV3_4G003450 Cucumis sativus L. HOM05D006283 ORTHO05D007727 3.8e-114 415.2 262 72.9
THA.LOC104803704 Tarenaya hassleriana HOM05D006283 ORTHO05D007727 6.4e-114 414.5 273 69.6
PGR142G0689 Punica granatum HOM05D006283 ORTHO05D007727 8.4e-114 414.1 254 74.0
Actinidia34602 Actinidia chinensis HOM05D006283 ORTHO05D007727 1.9e-113 412.9 269 72.5
Rhsim09G0027900 Rhododendron simsii HOM05D006283 ORTHO05D007727 9.3e-113 410.6 287 69.3
MSTRG.9766 Avicennia marina HOM05D006283 ORTHO05D007727 1.2e-112 410.2 279 70.3
AT3G59390 Arabidopsis thaliana HOM05D006283 ORTHO05D007727 2.7e-112 409.1 274 68.6
Lalb_Chr01g0003171 Lupinus albus HOM05D006283 ORTHO05D007727 2.7e-112 409.1 248 74.6
Sed0010312 Sechium edule HOM05D006283 ORTHO05D007727 2.7e-112 409.1 272 68.0
Lj3g0020373 Lotus japonicus HOM05D006283 ORTHO05D007727 3.5e-112 408.7 272 71.3
Medtr4g067140 Medicago truncatula HOM05D006283 ORTHO05D007727 6.0e-112 407.9 273 70.3
Nn1g09881 Nelumbo nucifera HOM05D006283 ORTHO05D007727 6.0e-112 407.9 269 70.6
CARHR169780 Cardamine hirsuta HOM05D006283 ORTHO05D007727 1.3e-111 406.8 273 68.1
Sed0022341 Sechium edule HOM05D006283 ORTHO05D007727 1.8e-111 406.4 273 70.3
Thhalv10006168m.g Eutrema salsugineum HOM05D006283 ORTHO05D007727 2.3e-111 406.0 264 69.3
Sp5g03750 Schrenkiella parvula HOM05D006283 ORTHO05D007727 2.3e-111 406.0 252 71.8
Aqoxy2G04092 Aquilegia oxysepala HOM05D006283 ORTHO05D007727 3.0e-111 405.6 264 70.8
Peaxi162Scf00126g00015 Petunia axillaris HOM05D006283 ORTHO05D007727 1.9e-110 402.9 259 69.9
BraA07t30108Z Brassica rapa HOM05D006283 ORTHO05D007727 5.6e-110 401.4 248 71.0
BolC6t37776H Brassica oleracea HOM05D006283 ORTHO05D007727 1.6e-109 399.8 273 67.4
Carub.0005s2613 Capsella rubella HOM05D006283 ORTHO05D007727 1.6e-109 399.8 274 66.8
A07p24630 Brassica napus HOM05D006283 ORTHO05D007727 4.8e-109 398.3 273 66.7
C06p26110 Brassica napus HOM05D006283 ORTHO05D007727 6.2e-109 397.9 273 66.7
Aa31LG10G13740 Aethionema arabicum HOM05D006283 ORTHO05D007727 1.1e-108 397.1 273 67.0
Lalb_Chr03g0026141 Lupinus albus HOM05D006283 ORTHO05D007727 9.0e-108 394.0 251 71.3
SalBow3G2028 Salvia bowleyana HOM05D006283 ORTHO05D007727 1.3e-106 390.2 264 67.4
DCAR_029916 Daucus carota HOM05D006283 ORTHO05D007727 3.8e-106 388.7 271 65.3
CAN.G1247.5 Capsicum annuum HOM05D006283 ORTHO05D007727 1.1e-105 387.1 267 66.3
COL.COLO4_07661 Corchorus olitorius HOM05D006283 ORTHO05D007727 1.1e-105 387.1 250 72.4
Sopen06g019520 Solanum pennellii HOM05D006283 ORTHO05D007727 4.6e-104 381.7 277 64.3
HanXRQChr16g0525531 Helianthus annuus HOM05D006283 ORTHO05D007727 3.9e-103 378.6 249 67.9
Solyc06g054450.3 Solanum lycopersicum HOM05D006283 ORTHO05D007727 3.9e-103 378.6 261 65.5
Lsat_1_v5_gn_4_30241 Lactuca sativa HOM05D006283 ORTHO05D007727 3.3e-102 375.6 260 65.4
Sc13g0006800 Simmondsia chinensis HOM05D006283 ORTHO05D007727 4.3e-102 375.2 289 62.3
Duzib151G0050 Durio zibethinus HOM05D006283 ORTHO05D007727 9.7e-102 374.0 244 71.3
ECA234G3618 Erigeron canadensis HOM05D006283 ORTHO05D007727 4.8e-101 371.7 249 67.9
Oeu034461.3 Olea europaea HOM05D006283 ORTHO05D007727 4.1e-100 368.6 237 73.0
Nitab4.5_0000130g0340 Nicotiana tabacum HOM05D006283 ORTHO05D007727 5.9e-99 364.8 256 66.8
Zm00001eb406800 Zea mays HOM05D006283 ORTHO05D007727 2.2e-98 362.8 267 62.5
arahy.Tifrunner.gnm1.ann1.7GR0QN Arachis hypogaea HOM05D006283 ORTHO05D007727 3.9e-95 352.1 245 68.2
arahy.Tifrunner.gnm1.ann1.9EYB94 Arachis hypogaea HOM05D006283 ORTHO05D007727 2.5e-94 349.4 245 67.8
Haze_01514 Corylus avellana HOM05D006283 ORTHO05D007727 5.7e-94 348.2 292 59.6
BcaB02g07471 Brassica carinata HOM05D006283 ORTHO05D007727 1.7e-93 346.7 235 66.4
BcaC08g44981 Brassica carinata HOM05D006283 ORTHO05D007727 2.8e-93 345.9 256 63.3
PGSC0003DMG400030791 Solanum tuberosum HOM05D006283 ORTHO05D007727 8.2e-93 344.4 222 69.4
CDE08G0087 Ceratophyllum demersum HOM05D006283 ORTHO05D007727 1.9e-89 333.2 231 67.1
EL10Ac3g05930 Beta vulgaris HOM05D006283 ORTHO05D007727 1.4e-87 327.0 239 63.6
unitig_747.g21679 Utricularia gibba HOM05D006283 ORTHO05D007727 2.8e-85 319.3 236 59.7
Hund12011 Selenicereus undatus HOM05D006283 ORTHO05D007727 5.0e-82 308.5 194 72.2
Duzib268G1109 Durio zibethinus HOM05D006283 ORTHO05D007727 2.7e-80 302.8 173 80.9
HPP92_009172 Vanilla planifolia HOM05D006283 ORTHO05D007727 8.0e-80 301.2 236 58.5
AUR62015391 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.5e-78 297.0 193 68.4
RcHm_v2.0_Chr4g0406831 Rosa chinensis HOM05D006283 ORTHO05D007727 1.1e-76 290.8 155 91.6
AUR62002299 Chenopodium quinoa HOM05D006283 ORTHO05D007727 1.2e-75 287.3 183 70.5
SGA_v2.0_scaffold12G06158 Striga asiatica HOM05D006283 ORTHO05D007727 1.2e-75 287.3 269 53.9
Pp3c25_2030 Physcomitrium patens HOM05D006283 ORTHO05D007727 7.7e-75 284.6 268 52.6
SMO119G0098 Selaginella moellendorffii HOM05D006283 ORTHO05D007727 3.3e-70 269.2 236 48.7
Mapoly0093s0081 Marchantia polymorpha HOM05D006283 ORTHO05D007727 4.4e-70 268.9 234 47.9
Glyma.12G052600 Glycine max HOM05D006283 ORTHO05D007727 7.5e-70 268.1 192 68.8
QL10p048744 Quercus lobata HOM05D006283 ORTHO05D007727 1.0e-66 257.7 164 73.8
FAN07G2518 Fragaria x ananassa HOM05D006283 ORTHO05D007727 3.7e-61 239.2 141 83.7
Sabra19G0057300 Salix brachista HOM05D006283 ORTHO05D007727 2.7e-59 233.0 141 78.0
Lj3A196G22 Lonicera japonica HOM05D006283 ORTHO05D007727 3.5e-59 232.6 135 73.3
FAN12G0556 Fragaria x ananassa HOM05D006283 ORTHO05D007727 4.5e-59 232.3 129 82.9
Hma1.2p1_0639F.1_g194055 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 7.8e-51 204.9 131 74.8
Hma1.2p1_0847F.1_g227840 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 7.8e-51 204.9 131 74.8
SEGI_31631 Sequoiadendron giganteum HOM05D006283 ORTHO05D007727 1.0e-50 204.5 161 53.4
ATR0824G015 Amborella trichopoda HOM05D006283 ORTHO05D007727 1.3e-50 204.1 137 69.3
QL10p048749 Quercus lobata HOM05D006283 ORTHO05D007727 1.6e-48 197.2 104 85.6
vmacro00624 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 4.3e-41 172.6 131 63.4
Prupe.1G193700 Prunus persica HOM05D006283 ORTHO05D007727 2.1e-40 170.2 105 76.2
Cre16.g673841 Chlamydomonas reinhardtii HOM05D006283 ORTHO05D007727 3.1e-31 139.8 246 33.3
RcHm_v2.0_Chr4g0406821 Rosa chinensis HOM05D006283 ORTHO05D007727 4.4e-30 136.0 62 98.4
ClCG07G015660 Citrullus lanatus HOM05D006283 ORTHO05D007727 9.9e-30 134.8 255 37.6
Psat7g091240 Pisum sativum HOM05D006283 ORTHO05D007727 7.8e-27 125.2 150 46.0
Lj3A196T13 Lonicera japonica HOM05D006283 ORTHO05D007727 1.5e-25 120.9 95 61.1
Peaxi162Scf00126g00003 Petunia axillaris HOM05D006283 ORTHO05D007727 3.6e-24 116.3 104 54.8
HanXRQChr16g0525261 Helianthus annuus HOM05D006283 ORTHO05D007727 3.5e-19 99.8 68 67.6
vmacro00625 Vaccinium macrocarpon HOM05D006283 ORTHO05D007727 7.3e-17 92.0 51 80.4
Hma1.2p1_0639F.1_g194050 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.2e-16 91.3 43 93.0
Hma1.2p1_0847F.1_g227839 Hydrangea macrophylla HOM05D006283 ORTHO05D007727 1.2e-16 91.3 43 93.0
Os11g0267100 Oryza sativa ssp. japonica HOM05D006283 ORTHO05D007727 4.4e-14 82.8 55 60.0
PRCOL_00001858 Prasinoderma coloniale HOM05D006283 ORTHO05D007727 4.9e-13 79.3 146 32.2
C09p49630 Brassica napus HOM05D006283 ORTHO05D007727 2.3e-10 70.5 59 50.8
BolC3t18408H Brassica oleracea HOM05D006283 ORTHO05D007727 5.1e-10 69.3 53 54.7
Cfa015166 Carpinus fangiana HOM05D006283 ORTHO05D007727 5.1e-10 69.3 39 82.1
Ah.07g201980 Amaranthus hybridus HOM05D006283 ORTHO05D007727 6.2e-08 62.4 36 69.4
CSS0010514 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 6.2e-08 62.4 36 77.8
CSS0034877 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 6.2e-08 62.4 36 77.8
BcaC02g08202 Brassica carinata HOM05D000127 ORTHO05D000243 1.1e-07 61.6 37 62.2
CSS0022675 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.8e-07 60.8 74 44.6
CSS0026672 Camellia sinensis var. sinensis HOM05D006283 ORTHO05D007727 1.8e-07 60.8 74 44.6
HanXRQChr12g0365531 Helianthus annuus HOM05D006283 ORTHO05D007727 4.5e-06 56.2 86 39.5


User provided reference genes

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