Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 1.4e-140 503.1 267 100.0
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.5e-115 419.9 269 84.8
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 3.4e-115 418.7 271 84.5
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.4e-115 418.7 271 84.5
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.7e-114 416.4 271 84.5
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.9e-114 415.6 271 83.8
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.3e-114 414.5 271 83.8
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.4e-84 317.0 268 66.8
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 1.6e-80 303.5 269 65.8
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 1.1e-78 297.4 274 63.5
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 1.5e-78 297.0 266 65.0
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 1.4e-76 290.4 235 73.2
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.0e-71 272.7 240 66.7
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 5.8e-67 258.5 266 57.5
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 5.8e-67 258.5 266 57.1
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 8.4e-66 254.6 267 55.1
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 1.4e-65 253.8 266 58.3
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.5e-65 251.9 230 64.8
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 9.3e-65 251.1 266 53.8
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.0e-63 247.7 245 58.4
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.0e-63 247.7 245 57.1
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.3e-63 246.5 228 63.2
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.3e-63 246.5 245 57.6
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 6.7e-63 245.0 245 56.3
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 3.3e-62 242.7 240 55.0
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.4e-60 237.3 196 66.3
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 2.1e-56 223.4 237 55.7
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 1.9e-54 216.9 266 50.8
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 3.3e-54 216.1 263 53.6
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 1.1e-52 211.1 267 45.3
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 3.1e-52 209.5 256 51.6
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 4.1e-52 209.1 246 52.8
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 5.3e-52 208.8 189 60.8
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 1.2e-51 207.6 267 47.6
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 2.0e-51 206.8 202 59.4
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 3.4e-51 206.1 267 48.3
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 3.4e-51 206.1 256 51.2
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 1.0e-50 204.5 170 70.6
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 1.0e-50 204.5 273 46.5
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 1.3e-50 204.1 208 57.7
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 1.7e-50 203.8 269 48.0
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 2.2e-50 203.4 192 57.3
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 5.0e-50 202.2 254 51.2
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 5.0e-50 202.2 265 46.0
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 5.0e-50 202.2 274 47.8
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 5.0e-50 202.2 264 49.6
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 4.2e-49 199.1 246 47.6
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 5.5e-49 198.7 241 51.0
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 5.5e-49 198.7 227 53.7
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.2e-48 197.6 184 57.1
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 3.5e-48 196.1 322 46.9
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 6.1e-48 195.3 230 49.6
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 6.1e-48 195.3 231 49.4
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.7e-47 191.8 165 68.5
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 6.7e-47 191.8 263 45.6
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 1.1e-46 191.0 260 49.2
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.9e-46 190.3 263 44.5
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.9e-46 190.3 196 55.1
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 2.5e-46 189.9 231 51.1
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 2.5e-46 189.9 246 49.2
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 4.3e-46 189.1 228 49.6
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 7.4e-46 188.3 258 46.1
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 7.4e-46 188.3 276 44.6
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 3.7e-45 186.0 184 49.5
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 2.4e-44 183.3 270 45.2
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 5.3e-44 182.2 199 51.8
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 6.9e-44 181.8 277 44.8
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 6.9e-44 181.8 249 49.0
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 9.0e-44 181.4 259 44.4
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 9.0e-44 181.4 267 40.8
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 2.6e-43 179.9 205 52.2
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 2.6e-43 179.9 200 53.5
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 4.5e-43 179.1 229 47.6
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 7.7e-43 178.3 179 52.5
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 7.7e-43 178.3 199 54.3
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 1.3e-42 177.6 228 48.2
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 2.9e-42 176.4 192 53.6
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 2.9e-42 176.4 228 47.8
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 2.9e-42 176.4 200 51.5
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.9e-42 176.4 265 47.2
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 3.8e-42 176.0 258 47.3
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 6.5e-42 175.3 181 56.9
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 1.1e-41 174.5 267 46.4
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 2.5e-41 173.3 233 45.9
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 5.5e-41 172.2 272 42.6
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.6e-40 170.6 274 46.0
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 2.1e-40 170.2 266 41.0
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 2.1e-40 170.2 182 53.3
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 2.7e-40 169.9 267 46.1
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 4.6e-40 169.1 266 42.5
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 1.8e-39 167.2 195 49.2
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 2.3e-39 166.8 159 59.7
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 5.1e-39 165.6 238 48.3
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 6.7e-39 165.2 247 45.7
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 8.8e-39 164.9 210 47.6
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 2.0e-38 163.7 261 44.4
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 5.7e-38 162.2 199 51.3
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 1.3e-37 161.0 199 51.3
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 1.7e-37 160.6 252 44.0
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 8.2e-37 158.3 182 50.0
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 4.1e-36 156.0 198 51.5
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 9.1e-36 154.8 265 41.9
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 1.2e-35 154.5 187 49.2
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 2.0e-35 153.7 270 41.1
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 3.8e-34 149.4 271 42.1
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 6.5e-34 148.7 235 43.8
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 8.5e-34 148.3 271 41.7
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.1e-33 147.9 238 43.3
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.1e-33 147.9 174 52.3
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 1.4e-33 147.5 271 41.0
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 1.4e-33 147.5 271 41.0
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 1.4e-33 147.5 271 41.0
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.5e-33 146.7 102 68.6
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 2.5e-33 146.7 122 66.4
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 3.2e-33 146.4 110 62.7
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 1.2e-32 144.4 238 42.0
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 3.9e-31 139.4 257 41.6
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 3.3e-30 136.3 193 45.6
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 2.2e-29 133.7 177 48.0
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 4.8e-29 132.5 266 39.8
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 1.8e-28 130.6 266 38.7
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.4e-28 130.2 265 40.4
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.2e-27 127.9 265 36.2
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 1.2e-27 127.9 207 42.5
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 1.6e-27 127.5 157 51.0
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 2.0e-27 127.1 181 47.0
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 3.5e-27 126.3 267 38.2
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 7.7e-27 125.2 237 39.7
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 7.7e-27 125.2 278 41.7
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 2.5e-25 120.2 113 52.2
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 7.2e-25 118.6 199 35.7
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 1.6e-24 117.5 278 34.2
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 1.6e-24 117.5 265 37.4
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.1e-24 117.1 134 53.0
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 8.0e-24 115.2 199 41.2
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.0e-23 114.8 230 39.1
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 6.7e-23 112.1 158 47.5
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 7.5e-22 108.6 216 42.1
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.7e-21 107.5 128 55.5
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 4.8e-21 105.9 189 43.9
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 4.8e-21 105.9 163 47.2
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 2.7e-19 100.1 187 38.5
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 3.5e-19 99.8 200 37.5
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 5.9e-19 99.0 192 39.6
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 6.5e-18 95.5 87 51.7
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 1.5e-17 94.4 189 41.8
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 2.5e-17 93.6 180 42.2
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 3.2e-17 93.2 177 39.0
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 7.2e-17 92.0 225 35.6
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 9.4e-17 91.7 66 59.1
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 4.7e-16 89.4 170 46.5
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 6.1e-16 89.0 242 39.3
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 4.0e-15 86.3 87 46.0
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 5.7e-14 82.4 102 59.8
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 2.8e-13 80.1 193 30.1
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 3.7e-13 79.7 241 36.1
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 8.3e-13 78.6 87 44.8
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 5.9e-11 72.4 77 42.9
CARHR170000 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.8e-07 60.8 75 49.3


User provided reference genes

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