Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 4.2e-30 134.0 68 100.0
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 1.0e-12 76.3 57 68.4
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 3.0e-12 74.7 57 70.2
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 8.8e-12 73.2 57 70.2
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 8.8e-12 73.2 57 70.2
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.0e-11 72.0 57 68.4
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.0e-11 72.0 57 68.4
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 5.7e-11 70.5 60 63.3
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.8e-11 69.7 60 61.7
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.8e-11 69.7 60 61.7
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 9.8e-11 69.7 60 61.7
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 1.3e-10 69.3 58 63.8
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 2.2e-10 68.6 59 64.4
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 3.7e-10 67.8 58 62.1
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 3.7e-10 67.8 57 61.4
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.1e-09 66.2 80 48.8
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.1e-09 66.2 59 64.4
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.4e-09 65.9 58 60.3
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.4e-09 65.9 61 60.7
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.4e-09 65.9 59 62.7
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 2.4e-09 65.1 65 55.4
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 3.1e-09 64.7 61 59.0
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 3.1e-09 64.7 59 61.0
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 3.1e-09 64.7 61 59.0
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 3.1e-09 64.7 58 58.6
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 4.1e-09 64.3 59 61.0
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 4.1e-09 64.3 62 53.2
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 5.4e-09 63.9 61 59.0
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 7.0e-09 63.5 59 61.0
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 7.0e-09 63.5 59 61.0
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 7.0e-09 63.5 59 61.0
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 9.1e-09 63.2 61 57.4
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.6e-08 62.4 59 62.7
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.6e-08 62.4 56 60.7
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.0e-08 62.0 58 55.2
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 2.0e-08 62.0 58 56.9
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 2.0e-08 62.0 61 57.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 2.0e-08 62.0 58 56.9
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.0e-08 62.0 59 52.5
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 2.0e-08 62.0 59 59.3
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.7e-08 61.6 60 55.0
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 2.7e-08 61.6 81 43.2
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 2.7e-08 61.6 61 52.5
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 2.7e-08 61.6 56 57.1
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.7e-08 61.6 56 58.9
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 2.7e-08 61.6 57 56.1
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 2.7e-08 61.6 61 49.2
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 3.5e-08 61.2 59 61.0
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 3.5e-08 61.2 59 61.0
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 3.5e-08 61.2 60 53.3
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 3.5e-08 61.2 58 55.2
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 3.5e-08 61.2 58 55.2
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 5.9e-08 60.5 59 59.3
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 5.9e-08 60.5 80 46.2
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 5.9e-08 60.5 60 50.0
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 5.9e-08 60.5 61 57.4
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 7.7e-08 60.1 59 62.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 7.7e-08 60.1 59 62.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 7.7e-08 60.1 59 62.7
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 7.7e-08 60.1 61 59.0
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.0e-07 59.7 61 52.5
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.0e-07 59.7 60 55.0
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 1.0e-07 59.7 62 53.2
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.3e-07 59.3 81 46.9
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.3e-07 59.3 59 62.7
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.3e-07 59.3 59 62.7
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.3e-07 59.3 59 62.7
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 1.3e-07 59.3 62 53.2
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 2.3e-07 58.5 59 55.9
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 2.9e-07 58.2 59 57.6
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.5e-06 55.8 59 50.8
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 2.5e-06 55.1 59 59.3
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 3.3e-06 54.7 62 50.0
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 3.3e-06 54.7 63 46.0
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.2e-06 54.3 61 49.2
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 4.2e-06 54.3 63 44.4
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 9.5e-06 53.1 61 45.9


User provided reference genes

Program Settings