Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 7.2e-119 430.6 224 100.0
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.5e-76 290.0 217 71.0
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.6e-76 289.3 231 71.4
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 7.3e-71 271.2 175 82.9
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 2.9e-67 259.2 233 66.5
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 2.2e-59 233.0 225 59.6
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.4e-58 230.3 229 59.8
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 2.1e-57 226.5 228 55.7
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.0e-56 224.2 162 71.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 2.3e-56 223.0 229 59.4
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 6.6e-56 221.5 195 61.0
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 8.6e-56 221.1 225 56.4
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.1e-55 220.7 164 67.1
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 4.3e-55 218.8 221 52.9
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 4.3e-55 218.8 220 54.1
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.3e-55 218.0 149 76.5
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.8e-54 216.1 161 70.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 2.8e-54 216.1 238 54.2
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 6.2e-54 214.9 164 65.2
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.4e-53 213.8 197 59.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 2.4e-53 213.0 223 54.3
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 4.0e-53 212.2 155 67.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 5.2e-53 211.8 154 70.1
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 6.8e-53 211.5 164 64.6
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.2e-52 210.7 229 50.7
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 2.0e-52 209.9 221 54.8
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 9.9e-52 207.6 156 67.9
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.3e-51 207.2 156 67.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.7e-51 206.8 165 64.8
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 2.9e-51 206.1 147 70.7
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.8e-51 205.7 149 74.5
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.1e-50 204.1 156 66.7
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.1e-50 204.1 163 63.2
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.9e-50 203.4 163 63.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.4e-50 203.0 157 67.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 2.4e-50 203.0 163 63.2
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 4.2e-50 202.2 211 53.6
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.6e-49 200.3 227 50.2
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.7e-49 199.5 182 61.5
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 3.5e-49 199.1 157 65.0
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 7.8e-49 198.0 205 51.2
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 5.1e-48 195.3 161 61.5
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 6.6e-48 194.9 163 61.3
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.5e-47 193.7 176 60.2
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.5e-47 193.0 221 51.6
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.8e-46 188.7 130 77.7
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.1e-45 187.6 153 62.7
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 6.9e-45 184.9 158 57.6
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.2e-44 184.1 165 58.8
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 2.6e-44 183.0 162 59.9
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 5.8e-44 181.8 196 51.5
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 9.9e-44 181.0 162 59.9
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 8.4e-43 177.9 163 55.8
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 5.4e-42 175.3 257 43.2
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 7.1e-42 174.9 230 49.6
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 1.2e-41 174.1 224 47.3
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.2e-41 174.1 227 45.4
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 1.2e-41 174.1 171 52.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.6e-41 173.7 182 53.3
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 2.7e-41 172.9 196 51.5
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.7e-41 172.9 126 65.9
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 6.0e-41 171.8 187 54.5
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 1.0e-40 171.0 227 44.9
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 1.6e-38 163.7 164 53.7
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 2.8e-38 162.9 159 53.5
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 1.2e-36 157.5 211 46.0
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 2.9e-35 152.9 177 48.0
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 1.9e-34 150.2 154 53.2
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 5.5e-34 148.7 108 70.4
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 2.7e-33 146.4 149 49.7
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 6.7e-32 141.7 101 68.3
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 6.7e-32 141.7 115 56.5
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 6.7e-32 141.7 202 42.1
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.8e-30 136.3 221 41.2
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 6.9e-29 131.7 161 46.0
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 9.0e-29 131.3 116 56.9
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.5e-28 130.6 116 56.9
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 4.5e-28 129.0 149 45.6
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 3.8e-27 125.9 138 43.5
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.4e-27 124.8 82 74.4
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.1e-26 124.4 174 41.4
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 3.2e-26 122.9 182 39.0
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 5.5e-26 122.1 183 38.3
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.2e-25 120.9 151 39.7
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.7e-25 119.8 183 37.2
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 4.6e-25 119.0 182 38.5
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.3e-24 116.7 151 42.4
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 2.3e-24 116.7 84 69.0
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.9e-23 113.6 84 67.9
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 2.5e-23 113.2 152 42.8
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.3e-23 112.8 145 47.6
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 5.7e-23 112.1 152 42.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 5.7e-23 112.1 121 41.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 7.4e-23 111.7 152 42.1
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.3e-22 110.9 126 40.5
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.6e-22 110.5 124 41.1
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.1e-22 110.2 126 42.9
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 2.8e-22 109.8 189 31.2
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.7e-22 109.4 126 40.5
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.7e-22 109.4 145 40.0
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 6.3e-22 108.6 125 41.6
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 6.3e-22 108.6 152 36.8
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 6.3e-22 108.6 124 40.3
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 6.3e-22 108.6 109 52.3
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 6.3e-22 108.6 205 33.2
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.2e-22 108.2 151 39.1
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 8.2e-22 108.2 125 39.2
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.1e-21 107.8 146 38.4
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 1.4e-21 107.5 153 37.3
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.4e-21 107.5 143 38.5
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 1.8e-21 107.1 77 68.8
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.4e-21 106.7 120 40.0
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 4.1e-21 105.9 158 36.7
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 4.1e-21 105.9 125 39.2
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.1e-21 105.9 205 31.7
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.2e-20 104.4 196 27.6
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.5e-20 104.0 124 37.9
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.0e-20 103.6 123 37.4
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.0e-20 103.6 123 37.4
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.6e-20 103.2 127 40.2
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 2.6e-20 103.2 161 38.5
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 2.6e-20 103.2 188 33.5
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 3.4e-20 102.8 144 38.2
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.4e-20 102.8 265 30.9
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 3.4e-20 102.8 113 44.2
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 4.5e-20 102.4 125 40.8
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 4.5e-20 102.4 121 39.7
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 5.9e-20 102.1 155 38.7
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 5.9e-20 102.1 166 32.5
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 7.6e-20 101.7 144 40.3
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 7.6e-20 101.7 123 36.6
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 1.0e-19 101.3 115 41.7
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.0e-19 101.3 121 38.0
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.0e-19 101.3 152 33.6
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.0e-19 101.3 198 29.8
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.3e-19 100.9 151 35.8
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.3e-19 100.9 156 33.3
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 1.7e-19 100.5 142 34.5
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 1.7e-19 100.5 128 36.7
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 2.2e-19 100.1 146 38.4
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.9e-19 99.8 223 34.1
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 3.8e-19 99.4 164 36.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 3.8e-19 99.4 164 36.6
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 5.0e-19 99.0 124 37.1
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 5.0e-19 99.0 104 52.9
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 8.5e-19 98.2 142 35.9
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.4e-18 97.4 129 42.6
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-18 97.4 69 71.0
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-18 97.4 69 71.0
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.9e-18 97.1 105 41.9
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 5.5e-18 95.5 130 36.9
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 9.3e-18 94.7 135 34.8
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 1.2e-17 94.4 122 37.7
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.6e-17 94.0 165 33.3
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 2.7e-17 93.2 126 36.5
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 2.3e-16 90.1 145 37.9
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 5.1e-16 89.0 87 49.4
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 8.7e-16 88.2 151 32.5
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 8.7e-16 88.2 156 32.7
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.1e-15 87.8 115 37.4
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.3e-15 86.3 123 33.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.4e-13 80.1 187 26.2
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.2e-11 73.6 159 36.5
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 3.8e-11 72.8 232 22.8
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.8e-08 63.9 74 39.2
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 6.7e-08 62.0 104 31.7
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.3e-07 59.7 73 37.0
Eucgr.A00011 Eucalyptus grandis HOM05D003796 ORTHO05D004486 2.2e-06 57.0 77 39.0
Eucgr.G00294 Eucalyptus grandis HOM05D003796 ORTHO05D004486 6.3e-06 55.5 77 39.0


User provided reference genes

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