Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0405491 Rosa chinensis HOM05D006038 ORTHO05D007547 9.4e-206 719.9 355 100.0
FAN17G0258 Fragaria x ananassa HOM05D006038 ORTHO05D007547 1.7e-183 646.0 356 88.8
FvH4_4g09770 Fragaria vesca HOM05D006038 ORTHO05D007547 1.5e-182 642.9 356 88.5
FAN22G1283 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.5e-182 642.1 356 88.5
FAN07G2585 Fragaria x ananassa HOM05D006038 ORTHO05D007547 2.0e-179 632.5 356 87.6
MD10G1281400 Malus domestica HOM05D006038 ORTHO05D007547 6.6e-167 590.9 350 82.9
Prupe.1G102000 Prunus persica HOM05D006038 ORTHO05D007547 2.8e-165 585.5 354 81.1
CANSAT11G1787 Cannabis sativa HOM05D006038 ORTHO05D007547 3.6e-149 531.9 356 73.0
Dinv42816 Davidia involucrata HOM05D006038 ORTHO05D007547 3.5e-144 515.4 347 72.6
Dinv43284 Davidia involucrata HOM05D006038 ORTHO05D007547 3.5e-144 515.4 347 72.6
CsaV3_2G007740 Cucumis sativus L. HOM05D006038 ORTHO05D007547 1.2e-136 490.3 357 68.9
MELO3C004111.2 Cucumis melo HOM05D006038 ORTHO05D007547 6.0e-136 488.0 347 69.5
TAR625G0922 Trochodendron aralioides HOM05D006038 ORTHO05D007547 1.0e-135 487.3 358 67.9
QL02p094222 Quercus lobata HOM05D006038 ORTHO05D007547 1.3e-135 486.9 354 69.2
Sed0013580 Sechium edule HOM05D006038 ORTHO05D007547 1.7e-135 486.5 359 68.5
CSS0019709 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 6.6e-135 484.6 348 70.4
CSS0049632 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.7e-135 484.2 348 70.7
CSS0006550 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.9e-134 483.0 355 70.1
GSVIVG01023690001 Vitis vinifera HOM05D006038 ORTHO05D007547 1.9e-134 483.0 348 70.1
CiPaw.15G164200 Carya illinoinensis HOM05D006038 ORTHO05D007547 5.6e-134 481.5 357 68.9
Lalb_Chr13g0300671 Lupinus albus HOM05D006038 ORTHO05D007547 5.6e-134 481.5 351 68.7
ClCG02G014260 Citrullus lanatus HOM05D006038 ORTHO05D007547 4.9e-130 468.4 367 65.1
Lj4g0023904 Lotus japonicus HOM05D006038 ORTHO05D007547 1.1e-129 467.2 355 66.2
Cfa020781 Carpinus fangiana HOM05D006038 ORTHO05D007547 2.4e-129 466.1 361 67.6
Glyma.02G206900 Glycine max HOM05D006038 ORTHO05D007547 3.2e-129 465.7 343 67.6
VMungo1215G1375 Vigna mungo HOM05D006038 ORTHO05D007547 3.5e-128 462.2 347 66.0
Glyma.17G071100 Glycine max HOM05D006038 ORTHO05D007547 6.0e-128 461.5 346 66.8
TWI63G0196 Tripterygium wilfordii HOM05D006038 ORTHO05D007547 2.3e-127 459.5 362 63.3
Thecc.09G154200 Theobroma cacao HOM05D006038 ORTHO05D007547 3.9e-127 458.8 353 65.4
CSS0009428 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 8.7e-127 457.6 332 69.6
Haze_19138 Corylus avellana HOM05D006038 ORTHO05D007547 1.5e-126 456.8 386 63.2
Psat4g010160 Pisum sativum HOM05D006038 ORTHO05D007547 1.5e-126 456.8 355 65.1
Ca_21155_v3 Cicer arietinum L. HOM05D006038 ORTHO05D007547 3.3e-126 455.7 353 65.2
Nn8g40105 Nelumbo nucifera HOM05D006038 ORTHO05D007547 7.4e-126 454.5 344 64.5
Gohir.A05G007900 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.1e-125 453.0 352 64.8
TPR.G22112 Trifolium pratense HOM05D006038 ORTHO05D007547 8.1e-125 451.1 355 64.5
Phvul.003G153400 Phaseolus vulgaris HOM05D006038 ORTHO05D007547 1.1e-124 450.7 347 65.4
Aqoxy7G02400 Aquilegia oxysepala HOM05D006038 ORTHO05D007547 4.0e-124 448.7 345 63.5
Gohir.D05G008700 Gossypium hirsutum HOM05D006038 ORTHO05D007547 2.6e-123 446.0 352 64.2
Gorai.009G008900 Gossypium raimondii HOM05D006038 ORTHO05D007547 2.6e-123 446.0 352 64.2
ECA236G4218 Erigeron canadensis HOM05D006038 ORTHO05D007547 1.1e-121 440.7 356 62.9
PGR114G0005 Punica granatum HOM05D006038 ORTHO05D007547 1.9e-121 439.9 363 62.3
PGR142G2424 Punica granatum HOM05D006038 ORTHO05D007547 1.9e-121 439.9 363 62.3
Medtr4g130280 Medicago truncatula HOM05D006038 ORTHO05D007547 1.2e-120 437.2 354 63.0
CSS0029746 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 1.3e-119 433.7 347 65.7
Actinidia38659 Actinidia chinensis HOM05D006038 ORTHO05D007547 3.0e-119 432.6 355 62.5
PSO170G4900 Papaver somniferum HOM05D006038 ORTHO05D007547 3.0e-119 432.6 349 62.8
DCAR_020091 Daucus carota HOM05D006038 ORTHO05D007547 1.5e-118 430.3 347 61.7
PSO017G0013 Papaver somniferum HOM05D006038 ORTHO05D007547 2.1e-117 426.4 349 61.9
Cpa.g.sc199.14 Carica papaya HOM05D006038 ORTHO05D007547 2.8e-117 426.0 350 62.6
PGSC0003DMG400011212 Solanum tuberosum HOM05D006038 ORTHO05D007547 4.0e-116 422.2 358 61.2
Atru.chr7.352 Acer truncatum HOM05D006038 ORTHO05D007547 5.3e-116 421.8 368 61.7
Manes.14G113700 Manihot esculenta HOM05D006038 ORTHO05D007547 9.0e-116 421.0 359 59.3
Solyc07g006010.3 Solanum lycopersicum HOM05D006038 ORTHO05D007547 1.0e-114 417.5 358 60.6
Sopen07g002150 Solanum pennellii HOM05D006038 ORTHO05D007547 1.0e-114 417.5 358 60.6
THA.LOC104803556 Tarenaya hassleriana HOM05D006038 ORTHO05D007547 1.3e-114 417.2 359 59.6
Rhsim03G0259500 Rhododendron simsii HOM05D006038 ORTHO05D007547 1.7e-114 416.8 336 64.3
Ciclev10008825m.g Citrus clementina HOM05D006038 ORTHO05D007547 2.9e-114 416.0 362 61.9
CSS0047764 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.5e-113 412.9 349 62.2
Peaxi162Scf00563g00418 Petunia axillaris HOM05D006038 ORTHO05D007547 4.2e-113 412.1 348 59.2
Lsat_1_v5_gn_8_64821 Lactuca sativa HOM05D006038 ORTHO05D007547 2.1e-112 409.8 337 60.8
Hund08960 Selenicereus undatus HOM05D006038 ORTHO05D007547 4.6e-112 408.7 348 60.6
EL10Ac8g18905 Beta vulgaris HOM05D006038 ORTHO05D007547 6.1e-112 408.3 352 60.5
Cc06_g14480 Coffea canephora HOM05D006038 ORTHO05D007547 2.3e-111 406.4 355 58.6
AL7G21280 Arabidopsis lyrata HOM05D006038 ORTHO05D007547 1.8e-108 396.7 363 57.9
CDE04G0171 Ceratophyllum demersum HOM05D006038 ORTHO05D007547 3.1e-108 396.0 343 56.3
Nitab4.5_0002809g0020 Nicotiana tabacum HOM05D006038 ORTHO05D007547 3.1e-108 396.0 369 56.6
Potri.006G180300 Populus trichocarpa HOM05D006038 ORTHO05D007547 4.1e-108 395.6 367 58.3
CAN.G1190.21 Capsicum annuum HOM05D006038 ORTHO05D007547 5.3e-108 395.2 349 59.6
AT4G30840 Arabidopsis thaliana HOM05D006038 ORTHO05D007547 9.0e-108 394.4 358 58.9
Migut.J01393 Erythranthe guttata HOM05D006038 ORTHO05D007547 2.0e-107 393.3 357 57.7
MBI15_g26068_MAGBIO Magnolia biondii HOM05D006038 ORTHO05D007547 7.7e-107 391.3 328 59.8
BcaNung02736 Brassica carinata HOM05D006038 ORTHO05D007547 1.3e-106 390.6 353 59.8
Sp7g28720 Schrenkiella parvula HOM05D006038 ORTHO05D007547 1.3e-106 390.6 356 58.1
CARHR238700 Cardamine hirsuta HOM05D006038 ORTHO05D007547 1.7e-106 390.2 358 57.5
MSTRG.6162 Avicennia marina HOM05D006038 ORTHO05D007547 3.8e-106 389.0 351 57.8
BraA03t15077Z Brassica rapa HOM05D006038 ORTHO05D007547 3.8e-106 389.0 353 58.9
Aa31LG2G19530 Aethionema arabicum HOM05D006038 ORTHO05D007547 8.5e-106 387.9 357 58.8
SGA_v2.0_scaffold265G46074 Striga asiatica HOM05D006038 ORTHO05D007547 2.5e-105 386.3 365 55.9
Sabra06G0137300 Salix brachista HOM05D006038 ORTHO05D007547 1.2e-104 384.0 371 56.9
Carub.0007s0972 Capsella rubella HOM05D006038 ORTHO05D007547 1.6e-104 383.6 358 57.0
HanXRQChr06g0179781 Helianthus annuus HOM05D006038 ORTHO05D007547 6.1e-104 381.7 343 56.3
Ah.14g084370 Amaranthus hybridus HOM05D001135 ORTHO05D001005 8.8e-103 377.9 333 58.6
Eucgr.K03188 Eucalyptus grandis HOM05D006038 ORTHO05D007547 4.8e-101 372.1 335 59.7
ATR0580G061 Amborella trichopoda HOM05D006038 ORTHO05D007547 5.3e-100 368.6 347 54.8
Nitab4.5_0001036g0170 Nicotiana tabacum HOM05D006038 ORTHO05D007547 5.9e-99 365.2 364 54.7
vmacro06051 Vaccinium macrocarpon HOM05D006038 ORTHO05D007547 1.0e-98 364.4 362 56.4
BcaNung01557 Brassica carinata HOM05D006038 ORTHO05D007547 1.3e-98 364.0 334 60.2
C07p58240 Brassica napus HOM05D006038 ORTHO05D007547 1.7e-98 363.6 345 56.8
HPP92_020613 Vanilla planifolia HOM05D006038 ORTHO05D007547 8.5e-98 361.3 353 55.0
A03p60370 Brassica napus HOM05D006038 ORTHO05D007547 1.4e-97 360.5 334 58.1
BolC7t46282H Brassica oleracea HOM05D006038 ORTHO05D007547 1.4e-97 360.5 334 58.4
Sc14g0000990 Simmondsia chinensis HOM05D006038 ORTHO05D007547 7.2e-97 358.2 356 54.8
AUR62028377 Chenopodium quinoa HOM05D006038 ORTHO05D007547 1.2e-91 340.9 245 67.8
AUR62025374 Chenopodium quinoa HOM05D006038 ORTHO05D007547 5.0e-90 335.5 232 70.3
Dinv41342 Davidia involucrata HOM05D006038 ORTHO05D007547 3.5e-83 312.8 236 64.4
arahy.Tifrunner.gnm1.ann1.3R6I6F Arachis hypogaea HOM05D006038 ORTHO05D007547 3.0e-79 299.7 231 66.2
Os08g0266600 Oryza sativa ssp. japonica HOM05D006038 ORTHO05D007547 3.0e-79 299.7 353 48.2
Zm00001eb177980 Zea mays HOM05D006038 ORTHO05D007547 8.8e-79 298.1 358 49.2
SMO367G0193 Selaginella moellendorffii HOM05D006038 ORTHO05D007547 2.2e-74 283.5 349 42.7
Thhalv10025548m.g Eutrema salsugineum HOM05D006038 ORTHO05D007547 1.9e-73 280.4 312 50.0
CSS0013086 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.2e-65 251.9 202 63.4
COL.COLO4_05400 Corchorus olitorius HOM05D006038 ORTHO05D007547 1.2e-64 251.1 216 58.3
CSS0027410 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.6e-64 249.6 205 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2538 Anthoceros agrestis HOM05D006038 ORTHO05D007547 6.1e-64 248.8 371 37.2
Oeu027617.1 Olea europaea HOM05D006038 ORTHO05D007547 1.4e-63 247.7 165 73.9
CSS0009266 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.5e-62 241.9 205 61.0
Cfa020780 Carpinus fangiana HOM05D006038 ORTHO05D007547 9.8e-62 241.5 216 60.2
SHI18668 Sapria himalayana HOM05D006038 ORTHO05D007547 3.9e-58 229.6 309 41.4
Lj7A464T42 Lonicera japonica HOM05D006038 ORTHO05D007547 8.3e-53 211.8 208 55.3
Lj7A464G38 Lonicera japonica HOM05D006038 ORTHO05D007547 1.7e-50 204.1 142 72.5
A01p07320 Brassica napus HOM05D006038 ORTHO05D007547 5.8e-46 189.1 237 45.6
CSS0022095 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 7.8e-43 178.7 120 75.8
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 7.8e-43 178.7 378 32.0
SEGI_08614 Sequoiadendron giganteum HOM05D006038 ORTHO05D007547 3.9e-42 176.4 140 57.1
CSS0024276 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 2.8e-40 170.2 205 47.8
Pp3c6_28770 Physcomitrium patens HOM05D006038 ORTHO05D007547 4.3e-33 146.4 164 43.3
CSS0047172 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.8e-21 106.7 62 83.9
CSS0031036 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 4.6e-19 99.8 62 77.4
CSS0034156 Camellia sinensis var. sinensis HOM05D006038 ORTHO05D007547 3.6e-16 90.1 62 72.6
Cre02.g090600 Chlamydomonas reinhardtii HOM05D006038 ORTHO05D007547 5.5e-12 76.3 157 31.2
BcaNung03435 Brassica carinata HOM05D001147 ORTHO05D000823 7.1e-12 75.9 119 42.0
Zm00001eb124580 Zea mays HOM05D006038 ORTHO05D007547 1.6e-11 74.7 52 63.5
Zm00001eb038770 Zea mays HOM05D006038 ORTHO05D007547 7.9e-11 72.4 53 64.2
Zm00001eb046820 Zea mays HOM05D006038 ORTHO05D007547 7.9e-11 72.4 53 64.2
Zm00001eb051760 Zea mays HOM05D006038 ORTHO05D007547 7.9e-11 72.4 53 64.2
Zm00001eb369920 Zea mays HOM05D006038 ORTHO05D007547 1.0e-10 72.0 69 52.2
Zm00001eb253640 Zea mays HOM05D006038 ORTHO05D007547 3.0e-10 70.5 52 63.5
QL93p0107_0059 Quercus lobata HOM05D006038 ORTHO05D007547 5.3e-07 59.7 57 52.6
Zm00001eb343430 Zea mays HOM05D002913 ORTHO05D020952 6.9e-07 59.3 70 44.3
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 3.4e-06 57.0 49 55.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 3.4e-06 57.0 49 55.1
Zm00001eb354900 Zea mays HOM05D002913 ORTHO05D026003 3.4e-06 57.0 49 55.1


User provided reference genes

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