Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0405231 Rosa chinensis HOM05D005031 ORTHO05D006098 9.9e-92 340.1 174 100.0
RcHm_v2.0_Chr5g0047191 Rosa chinensis HOM05D005031 ORTHO05D006098 4.0e-85 318.2 174 92.5
FvH4_3g25860 Fragaria vesca HOM05D005031 ORTHO05D006098 4.5e-84 314.7 174 90.8
FAN11G2096 Fragaria x ananassa HOM05D005031 ORTHO05D006098 4.5e-84 314.7 174 90.8
FAN21G1649 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.7e-83 312.8 174 90.8
Prupe.1G100400 Prunus persica HOM05D005031 ORTHO05D006098 4.9e-83 311.2 174 89.1
FAN25G2017 Fragaria x ananassa HOM05D005031 ORTHO05D006098 1.4e-82 309.7 174 90.2
MD00G1059200 Malus domestica HOM05D005031 ORTHO05D006098 4.2e-82 308.1 174 88.5
MD00G1091200 Malus domestica HOM05D005031 ORTHO05D006098 5.5e-82 307.8 174 87.4
Thecc.09G157500 Theobroma cacao HOM05D005031 ORTHO05D006098 3.3e-79 298.5 174 84.5
Duzib187G1655 Durio zibethinus HOM05D005031 ORTHO05D006098 1.3e-78 296.6 174 83.9
Duzib168G1565 Durio zibethinus HOM05D005031 ORTHO05D006098 1.6e-78 296.2 174 84.5
Gohir.D08G098400 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.6e-78 296.2 174 83.9
Duzib187G0728 Durio zibethinus HOM05D005031 ORTHO05D006098 3.7e-78 295.0 174 83.3
Gorai.004G106100 Gossypium raimondii HOM05D005031 ORTHO05D006098 6.2e-78 294.3 174 83.3
Gohir.A08G087500 Gossypium hirsutum HOM05D005031 ORTHO05D006098 1.1e-77 293.5 174 82.8
Potri.018G101100 Populus trichocarpa HOM05D005031 ORTHO05D006098 2.4e-77 292.4 174 81.0
Ca_21160_v3 Cicer arietinum L. HOM05D005031 ORTHO05D006098 4.0e-77 291.6 174 82.2
VMungo1215G0734 Vigna mungo HOM05D005031 ORTHO05D006098 5.8e-76 287.7 174 81.6
COL.COLO4_10074 Corchorus olitorius HOM05D005031 ORTHO05D006098 7.6e-76 287.3 174 82.2
TPR.G1244 Trifolium pratense HOM05D005031 ORTHO05D006098 1.7e-75 286.2 174 81.0
Ciclev10012924m.g Citrus clementina HOM05D005031 ORTHO05D006098 2.9e-75 285.4 174 81.6
Phvul.010G125500 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 3.8e-75 285.0 174 80.5
Phvul.003G152700 Phaseolus vulgaris HOM05D005031 ORTHO05D006098 6.5e-75 284.3 174 80.5
Lj6g0018969 Lotus japonicus HOM05D005031 ORTHO05D006098 1.4e-74 283.1 174 79.9
Glyma.02G207700 Glycine max HOM05D005031 ORTHO05D006098 2.5e-74 282.3 174 79.3
TWI73G0469 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 3.2e-74 282.0 174 81.6
arahy.Tifrunner.gnm1.ann1.QFVN2V Arachis hypogaea HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 80.5
Glyma.17G070000 Glycine max HOM05D005031 ORTHO05D006098 7.1e-74 280.8 174 78.7
CsaV3_2G007780 Cucumis sativus L. HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 78.2
Nn8g40193 Nelumbo nucifera HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 78.7
PGR031G2537 Punica granatum HOM05D005031 ORTHO05D006098 1.6e-73 279.6 174 78.7
Manes.06G033000 Manihot esculenta HOM05D005031 ORTHO05D006098 3.5e-73 278.5 174 79.3
Sabra18G0087000 Salix brachista HOM05D005031 ORTHO05D006098 4.6e-73 278.1 194 72.7
Medtr4g130180 Medicago truncatula HOM05D005031 ORTHO05D006098 6.0e-73 277.7 174 77.6
Lalb_Chr07g0180011 Lupinus albus HOM05D005031 ORTHO05D006098 1.8e-72 276.2 175 80.0
CiPaw.06G050600 Carya illinoinensis HOM05D005031 ORTHO05D006098 3.9e-72 275.0 174 78.2
Thhalv10026393m.g Eutrema salsugineum HOM05D005031 ORTHO05D006098 3.9e-72 275.0 174 75.9
Eucgr.H00166 Eucalyptus grandis HOM05D005031 ORTHO05D006098 8.7e-72 273.9 174 77.6
Sed0023985 Sechium edule HOM05D005031 ORTHO05D006098 1.5e-71 273.1 174 76.4
Sp7g28380 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.9e-71 272.7 174 75.9
AL4G13970 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 77.0
BcaNung00560 Brassica carinata HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 74.1
BcaNung00561 Brassica carinata HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 74.1
C07p57970 Brassica napus HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 74.1
BolC7t46255H Brassica oleracea HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 74.1
CANSAT11G2524 Cannabis sativa HOM05D005031 ORTHO05D006098 4.3e-71 271.6 174 76.4
A03p59910 Brassica napus HOM05D005031 ORTHO05D006098 5.7e-71 271.2 174 74.1
BraA03t15048Z Brassica rapa HOM05D005031 ORTHO05D006098 1.3e-70 270.0 174 73.6
AT2G23940 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 2.8e-70 268.9 174 75.3
ATR0580G158 Amborella trichopoda HOM05D005031 ORTHO05D006098 4.8e-70 268.1 174 75.3
MELO3C004109.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.3e-70 267.7 174 75.9
Lj4g0007960 Lotus japonicus HOM05D005031 ORTHO05D006098 1.4e-69 266.5 175 74.9
C01p08550 Brassica napus HOM05D005031 ORTHO05D006098 1.8e-69 266.2 174 73.0
THA.LOC104819960 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 2.4e-69 265.8 174 71.8
Carub.0004s0310 Capsella rubella HOM05D005031 ORTHO05D006098 3.1e-69 265.4 174 75.3
Aa31LG2G20010 Aethionema arabicum HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 74.7
GSVIVG01033204001 Vitis vinifera HOM05D005031 ORTHO05D006098 5.3e-69 264.6 174 75.9
ClCG11G012690 Citrullus lanatus HOM05D005031 ORTHO05D006098 6.9e-69 264.2 174 75.3
arahy.Tifrunner.gnm1.ann1.0TL0BP Arachis hypogaea HOM05D005031 ORTHO05D006098 4.5e-68 261.5 198 69.2
THA.LOC104803530 Tarenaya hassleriana HOM05D005031 ORTHO05D006098 4.5e-68 261.5 174 73.0
CARHR184610 Cardamine hirsuta HOM05D005031 ORTHO05D006098 5.9e-68 261.2 166 77.1
TAR636G0261 Trochodendron aralioides HOM05D005031 ORTHO05D006098 1.3e-67 260.0 171 74.9
BcaC09g51840 Brassica carinata HOM05D005031 ORTHO05D006098 2.2e-67 259.2 174 71.3
TWI23G1034 Tripterygium wilfordii HOM05D005031 ORTHO05D006098 2.2e-67 259.2 158 81.0
EL10Ac7g17961 Beta vulgaris HOM05D005031 ORTHO05D006098 3.8e-67 258.5 174 73.0
A01p07680 Brassica napus HOM05D005031 ORTHO05D006098 6.5e-67 257.7 174 70.1
AL7G21640 Arabidopsis lyrata HOM05D005031 ORTHO05D006098 8.5e-67 257.3 174 71.3
BraA01t00711Z Brassica rapa HOM05D005031 ORTHO05D006098 8.5e-67 257.3 173 69.9
Hund18050 Selenicereus undatus HOM05D005031 ORTHO05D006098 1.9e-66 256.1 174 73.6
HPP92_025776 Vanilla planifolia HOM05D005031 ORTHO05D006098 2.5e-66 255.8 174 72.4
AT4G30500 Arabidopsis thaliana HOM05D005031 ORTHO05D006098 5.5e-66 254.6 174 71.8
PSO017G4787 Papaver somniferum HOM05D005031 ORTHO05D006098 2.1e-65 252.7 174 72.4
Atru.chr12.1707 Acer truncatum HOM05D005031 ORTHO05D006098 3.6e-65 251.9 174 71.8
PSO478G0084 Papaver somniferum HOM05D005031 ORTHO05D006098 4.6e-65 251.5 174 72.4
BolC1t00837H Brassica oleracea HOM05D005031 ORTHO05D006098 7.9e-65 250.8 166 71.1
Hma1.2p1_1493F.1_g286836 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.0e-64 250.4 174 71.3
BolC1t00831H Brassica oleracea HOM05D005031 ORTHO05D006098 3.0e-64 248.8 166 70.5
CDE05G2574 Ceratophyllum demersum HOM05D005031 ORTHO05D006098 3.0e-64 248.8 174 71.8
QL01p011713 Quercus lobata HOM05D005031 ORTHO05D006098 3.9e-64 248.4 173 71.7
Oeu045637.1 Olea europaea HOM05D005031 ORTHO05D006098 5.1e-64 248.1 174 70.7
Hma1.2p1_2290F.1_g319050 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 8.7e-64 247.3 174 70.7
Oeu031856.2 Olea europaea HOM05D005031 ORTHO05D006098 1.5e-63 246.5 174 69.5
PSO675G4517 Papaver somniferum HOM05D005031 ORTHO05D006098 4.3e-63 245.0 174 70.1
Atru.chr12.1715 Acer truncatum HOM05D005031 ORTHO05D006098 2.8e-62 242.3 143 79.7
MBI14_g16418_MAGBIO Magnolia biondii HOM05D005031 ORTHO05D006098 1.8e-61 239.6 146 82.9
CAN.G1190.6 Capsicum annuum HOM05D005031 ORTHO05D006098 4.1e-61 238.4 174 69.0
ECA234G3840 Erigeron canadensis HOM05D005031 ORTHO05D006098 5.3e-61 238.0 174 67.8
Zm00001eb186920 Zea mays HOM05D005031 ORTHO05D006098 4.5e-60 235.0 175 67.4
Aqoxy5G00990 Aquilegia oxysepala HOM05D005031 ORTHO05D006098 1.0e-59 233.8 171 67.8
Hma1.2p1_2438F.1_g322190 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 1.1e-58 230.3 156 71.8
SalBow1G8617 Salvia bowleyana HOM05D005031 ORTHO05D006098 1.4e-58 229.9 174 66.7
Peaxi162Scf00038g00324 Petunia axillaris HOM05D005031 ORTHO05D006098 2.5e-58 229.2 174 68.4
BolC1t00834H Brassica oleracea HOM05D005031 ORTHO05D006098 7.2e-58 227.6 151 68.9
HanXRQChr10g0307831 Helianthus annuus HOM05D005031 ORTHO05D006098 2.7e-57 225.7 174 66.1
Sed0023066 Sechium edule HOM05D005031 ORTHO05D006098 3.6e-57 225.3 147 76.2
Migut.K00291 Erythranthe guttata HOM05D005031 ORTHO05D006098 6.1e-57 224.6 174 64.9
Nitab4.5_0001036g0100 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.8e-56 223.0 174 66.7
vmacro01000 Vaccinium macrocarpon HOM05D005031 ORTHO05D006098 3.9e-56 221.9 174 65.5
Actinidia38656 Actinidia chinensis HOM05D005031 ORTHO05D006098 5.1e-56 221.5 174 63.8
Nitab4.5_0002545g0040 Nicotiana tabacum HOM05D005031 ORTHO05D006098 1.5e-55 219.9 174 65.5
Solyc07g006150.3 Solanum lycopersicum HOM05D005031 ORTHO05D006098 2.6e-55 219.2 174 64.9
Sopen07g002260 Solanum pennellii HOM05D005031 ORTHO05D006098 2.6e-55 219.2 174 64.9
PGSC0003DMG400011218 Solanum tuberosum HOM05D005031 ORTHO05D006098 3.3e-55 218.8 174 64.4
Dinv41325 Davidia involucrata HOM05D005031 ORTHO05D006098 4.4e-55 218.4 174 63.8
SGA_v2.0_scaffold12G06032 Striga asiatica HOM05D005031 ORTHO05D006098 7.4e-55 217.6 174 63.8
Psat0s2826g0160 Pisum sativum HOM05D005031 ORTHO05D006098 6.3e-54 214.5 122 82.8
CSS0012616 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 1.4e-53 213.4 172 64.0
CSS0024126 Camellia sinensis var. sinensis HOM05D005031 ORTHO05D006098 3.1e-53 212.2 172 63.4
Actinidia33308 Actinidia chinensis HOM05D005031 ORTHO05D006098 5.3e-53 211.5 174 62.6
Cc06_g14310 Coffea canephora HOM05D005031 ORTHO05D006098 9.1e-53 210.7 174 62.6
MSTRG.10716 Avicennia marina HOM05D005031 ORTHO05D006098 2.0e-52 209.5 174 62.6
Lsat_1_v5_gn_5_88201 Lactuca sativa HOM05D005031 ORTHO05D006098 1.3e-51 206.8 176 61.9
Rhsim03G0261100 Rhododendron simsii HOM05D005031 ORTHO05D006098 1.7e-51 206.5 196 56.6
Sc05g0001840 Simmondsia chinensis HOM05D005031 ORTHO05D006098 1.6e-49 199.9 122 73.8
Rhsim03G0260600 Rhododendron simsii HOM05D005031 ORTHO05D006098 9.7e-47 190.7 239 46.4
Os02g0666800 Oryza sativa ssp. japonica HOM05D005031 ORTHO05D006098 1.3e-46 190.3 175 56.0
Hma1.2p1_2725F.1_g327560 Hydrangea macrophylla HOM05D005031 ORTHO05D006098 3.7e-46 188.7 122 73.0
AagrBONN_evm.TU.Sc2ySwM_368.3216 Anthoceros agrestis HOM05D005031 ORTHO05D006098 2.4e-45 186.0 171 56.1
AUR62001168 Chenopodium quinoa HOM05D005031 ORTHO05D006098 1.5e-42 176.8 182 53.3
Mapoly0003s0226 Marchantia polymorpha HOM05D005031 ORTHO05D006098 5.2e-40 168.3 174 50.0
CBR_g3690 Chara braunii HOM05D005031 ORTHO05D006098 3.3e-39 165.6 173 47.4
Haze_21256 Corylus avellana HOM05D005031 ORTHO05D006098 5.7e-39 164.9 95 81.1
SMO164G0234 Selaginella moellendorffii HOM05D005031 ORTHO05D006098 9.7e-39 164.1 177 50.8
Pp3c11_17250 Physcomitrium patens HOM05D005031 ORTHO05D006098 1.8e-37 159.8 173 52.0
Ah.08g218880 Amaranthus hybridus HOM05D005031 ORTHO05D006098 2.9e-35 152.5 94 71.3
Cpa.g.sc743.3 Carica papaya HOM05D005031 ORTHO05D006098 1.5e-34 150.2 93 73.1
AUR62022155 Chenopodium quinoa HOM05D005031 ORTHO05D006098 2.5e-34 149.4 94 69.1
BcaB08g34788 Brassica carinata HOM05D005031 ORTHO05D006098 2.9e-27 125.9 127 55.1
BcaNung01743 Brassica carinata HOM05D005031 ORTHO05D006098 6.1e-25 118.2 119 52.1
CARHR238390 Cardamine hirsuta HOM05D005031 ORTHO05D006098 6.8e-24 114.8 96 51.0
Lj7A465G52 Lonicera japonica HOM05D005031 ORTHO05D006098 2.8e-22 109.4 67 74.6
BcaB04g19089 Brassica carinata HOM05D005031 ORTHO05D006098 4.1e-21 105.5 121 49.6
unitig_62.g23488 Utricularia gibba HOM05D005031 ORTHO05D006098 1.0e-19 100.9 85 62.4
MELO3C020438.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.6e-19 98.2 55 76.4
Cre02.g096850 Chlamydomonas reinhardtii HOM05D005031 ORTHO05D006098 3.3e-18 95.9 168 34.5
MELO3C010414.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.3e-18 94.7 53 77.4
PRCOL_00004780 Prasinoderma coloniale HOM05D005031 ORTHO05D006098 1.0e-16 90.9 176 30.1
MELO3C032992.2 Cucumis melo HOM05D005031 ORTHO05D006098 6.8e-16 88.2 48 79.2
MELO3C033057.2 Cucumis melo HOM05D005031 ORTHO05D006098 7.8e-12 74.7 38 81.6
Rhsim03G0261000 Rhododendron simsii HOM05D005031 ORTHO05D006098 2.3e-11 73.2 93 44.1
MCO15G043 Micromonas commoda HOM05D005031 ORTHO05D006098 1.9e-10 70.1 173 29.5
Sp4g02835 Schrenkiella parvula HOM05D005031 ORTHO05D006098 1.1e-08 64.3 157 31.8


User provided reference genes

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