Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0404701 Rosa chinensis HOM05D004960 ORTHO05D004696 2.8e-77 292.0 157 100.0
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 8.5e-50 200.7 155 72.3
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 1.3e-29 133.7 154 52.6
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 3.2e-25 119.0 154 49.4
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 4.0e-23 112.1 155 50.3
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 2.4e-20 102.8 154 41.6
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 1.0e-18 97.4 112 54.5
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 2.3e-18 96.3 150 45.3
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 2.5e-17 92.8 153 38.6
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 4.2e-17 92.0 157 39.5
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 7.2e-17 91.3 155 38.7
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 9.5e-17 90.9 151 39.1
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 9.5e-17 90.9 154 39.6
TWI32G0132 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.6e-16 89.0 157 39.5
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 4.7e-16 88.6 147 40.1
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 1.0e-15 87.4 154 33.8
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.3e-15 86.3 151 37.7
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 1.2e-14 84.0 154 33.1
CSS0015847 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.7e-13 79.0 152 40.8
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 4.9e-13 78.6 152 33.6
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 6.3e-13 78.2 148 37.8
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 3.1e-12 75.9 127 36.2
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 7.0e-12 74.7 150 36.0
Oeu043380.1 Olea europaea HOM05D004960 ORTHO05D004696 1.6e-11 73.6 153 37.3
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.3e-10 70.5 143 35.0
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.7e-10 70.1 158 34.2
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 2.3e-10 69.7 149 28.9
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 2.3e-10 69.7 158 32.3
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 3.8e-10 68.9 150 28.0
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 3.8e-10 68.9 150 28.0
CSS0034998 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 3.8e-10 68.9 132 36.4
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 5.0e-10 68.6 148 29.1
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 8.6e-10 67.8 150 27.3
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 1.1e-09 67.4 151 29.1
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 1.1e-09 67.4 149 28.2
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-09 67.4 149 28.2
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-09 67.4 151 29.1
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 1.1e-09 67.4 150 27.3
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 1.1e-09 67.4 149 28.2
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 1.1e-09 67.4 124 33.9
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 1.5e-09 67.0 102 38.2
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 1.9e-09 66.6 149 27.5
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 1.9e-09 66.6 149 27.5
PGR084G0002 Punica granatum HOM05D004960 ORTHO05D004696 1.9e-09 66.6 148 36.5
PGR142G0218 Punica granatum HOM05D004960 ORTHO05D004696 1.9e-09 66.6 148 36.5
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 1.9e-09 66.6 146 28.1
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 2.5e-09 66.2 162 28.4
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 3.3e-09 65.9 151 29.1
Actinidia35989 Actinidia chinensis HOM05D004960 ORTHO05D004696 4.3e-09 65.5 153 32.0
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 4.3e-09 65.5 150 28.0
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 9.5e-09 64.3 156 32.7
CSS0049948 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 2.1e-08 63.2 132 32.6
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 2.1e-08 63.2 156 30.1
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.1e-08 63.2 156 32.7
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 2.8e-08 62.8 147 32.7
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.6e-08 62.4 156 34.0
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 3.6e-08 62.4 156 34.0
Carub.0003s2660 Capsella rubella HOM05D004960 ORTHO05D004696 6.1e-08 61.6 149 28.9
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 6.1e-08 61.6 153 26.8
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 8.0e-08 61.2 132 34.8
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 8.0e-08 61.2 156 28.8
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 8.0e-08 61.2 157 33.1
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 8.0e-08 61.2 157 33.1
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.0e-07 60.8 129 31.0
BcaC02g09087 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-07 60.5 151 32.5
A04p05570 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-07 60.5 153 32.7
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 1.4e-07 60.5 153 33.3
Oeu037992.1 Olea europaea HOM05D004960 ORTHO05D004696 1.4e-07 60.5 157 30.6
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 1.4e-07 60.5 92 41.3
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 2.3e-07 59.7 124 32.3
Dinv41299 Davidia involucrata HOM05D004960 ORTHO05D004696 3.0e-07 59.3 157 31.8
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.0e-07 58.9 155 26.5
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 4.0e-07 58.9 157 29.3
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.0e-07 58.9 122 32.8
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 6.8e-07 58.2 154 26.6
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 8.9e-07 57.8 155 26.5
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 8.9e-07 57.8 155 32.9
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 1.2e-06 57.4 152 31.6
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 1.5e-06 57.0 118 28.0
Aqoxy7G03206 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 2.0e-06 56.6 108 29.6
Carub.0003s3294 Capsella rubella HOM05D004960 ORTHO05D004696 2.0e-06 56.6 142 27.5
Migut.J01431 Erythranthe guttata HOM05D015143 ORTHO05D004696 2.0e-06 56.6 146 30.8
ECA240G0411 Erigeron canadensis HOM05D004960 ORTHO05D004696 3.4e-06 55.8 142 33.8
Migut.J01430 Erythranthe guttata HOM05D004960 ORTHO05D004696 7.5e-06 54.7 151 31.8
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 9.8e-06 54.3 156 25.0


User provided reference genes

Program Settings