Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.0e-50 203.0 95 100.0
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.5e-28 127.5 62 91.9
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.5e-28 127.5 62 91.9
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 1.2e-27 126.3 62 90.3
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.2e-27 126.3 63 90.5
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 2.1e-27 125.6 62 91.9
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 4.0e-26 121.3 63 88.9
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 7.5e-25 117.1 73 71.2
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 8.2e-24 113.6 62 77.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 8.2e-24 113.6 87 58.6
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.1e-23 113.2 62 82.3
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.1e-23 113.2 64 76.6
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.4e-23 112.8 62 82.3
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.8e-23 112.5 62 79.0
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.8e-23 112.5 62 79.0
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.4e-23 112.1 62 77.4
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 2.4e-23 112.1 62 79.0
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 7.0e-23 110.5 62 77.4
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 9.1e-23 110.2 62 77.4
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 9.1e-23 110.2 62 75.8
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.2e-22 109.8 62 77.4
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.6e-22 109.4 62 77.4
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.6e-22 109.4 62 75.8
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.6e-22 109.4 63 76.2
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.6e-22 109.4 62 75.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-22 109.0 62 75.8
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-22 109.0 62 75.8
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.0e-22 109.0 62 75.8
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.0e-22 109.0 62 75.8
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.7e-22 108.6 62 77.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.7e-22 108.6 62 77.4
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.5e-22 108.2 62 74.2
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 3.5e-22 108.2 62 75.8
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 3.5e-22 108.2 62 75.8
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.5e-22 108.2 62 74.2
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 3.5e-22 108.2 62 74.2
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 3.5e-22 108.2 69 68.1
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 4.5e-22 107.8 62 75.8
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 4.5e-22 107.8 62 74.2
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 5.9e-22 107.5 62 74.2
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 5.9e-22 107.5 62 74.2
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 5.9e-22 107.5 62 75.8
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 7.7e-22 107.1 62 74.2
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 7.7e-22 107.1 62 75.8
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 7.7e-22 107.1 62 74.2
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.0e-21 106.7 62 74.2
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.0e-21 106.7 69 66.7
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.3e-21 106.3 62 72.6
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.3e-21 106.3 62 72.6
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.3e-21 106.3 62 74.2
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.3e-21 106.3 62 74.2
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.3e-21 106.3 62 74.2
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.7e-21 105.9 62 74.2
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.2e-21 105.5 62 72.6
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.2e-21 105.5 62 72.6
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.2e-21 105.5 62 72.6
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 2.9e-21 105.1 62 74.2
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.9e-21 105.1 62 72.6
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 5.0e-21 104.4 62 74.2
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 5.0e-21 104.4 62 71.0
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 6.5e-21 104.0 62 72.6
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 6.5e-21 104.0 62 69.4
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 6.5e-21 104.0 62 71.0
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 6.5e-21 104.0 62 74.2
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 6.5e-21 104.0 62 72.6
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 8.5e-21 103.6 62 74.2
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 8.5e-21 103.6 62 74.2
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 1.1e-20 103.2 62 71.0
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.5e-20 102.8 62 72.6
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.9e-20 102.4 62 71.0
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.9e-20 102.4 62 72.6
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.9e-20 102.4 62 74.2
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 2.5e-20 102.1 64 68.8
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.2e-20 101.7 64 67.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 3.2e-20 101.7 62 71.0
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 4.2e-20 101.3 78 57.7
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 4.2e-20 101.3 62 69.4
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 5.5e-20 100.9 62 71.0
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.5e-20 100.9 62 71.0
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.5e-20 100.9 62 71.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 5.5e-20 100.9 62 71.0
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 7.2e-20 100.5 62 71.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 7.2e-20 100.5 62 67.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 9.4e-20 100.1 62 66.1
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 9.4e-20 100.1 62 71.0
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 9.4e-20 100.1 62 71.0
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 9.4e-20 100.1 77 53.2
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 9.4e-20 100.1 62 71.0
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.2e-19 99.8 64 65.6
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-19 99.8 64 65.6
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-19 99.8 64 65.6
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.6e-19 99.4 62 72.6
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.1e-19 99.0 62 66.1
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.1e-19 99.0 64 65.6
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.1e-19 99.0 62 69.4
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 2.7e-19 98.6 62 69.4
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.6e-19 98.2 62 69.4
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 8.0e-19 97.1 64 64.1
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 8.0e-19 97.1 64 64.1
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 8.0e-19 97.1 69 59.4
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 8.0e-19 97.1 62 69.4
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.0e-18 96.7 84 58.3
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.4e-18 96.3 62 64.5
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.4e-18 96.3 62 64.5
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.4e-18 96.3 62 64.5
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.4e-18 96.3 62 67.7
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.4e-18 96.3 62 67.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 3.0e-18 95.1 62 62.9
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 3.0e-18 95.1 62 62.9
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 5.2e-18 94.4 62 64.5
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 6.8e-18 94.0 62 64.5
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 6.8e-18 94.0 62 66.1
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 8.8e-18 93.6 63 65.1
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-17 92.4 61 59.0
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.4e-17 91.3 49 77.6
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 5.7e-17 90.9 61 62.3
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 7.5e-17 90.5 62 58.1
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 7.5e-17 90.5 61 62.3
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 7.5e-17 90.5 62 58.1
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 8.3e-16 87.0 61 62.3
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.4e-15 85.5 62 58.1
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 6.5e-13 77.4 39 84.6
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-12 76.6 49 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 2.5e-12 75.5 61 50.8
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.2e-09 66.6 64 45.3
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 2.6e-09 65.5 61 49.2
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 7.5e-09 63.9 32 81.2
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.3e-08 63.2 37 70.3
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 2.8e-08 62.0 60 46.7
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.1e-07 60.1 34 70.6
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 7.0e-07 57.4 32 68.8
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 9.2e-07 57.0 66 47.0
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.6e-06 56.2 34 67.6


User provided reference genes

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