Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0402801 Rosa chinensis HOM05D001712 ORTHO05D001731 5.7e-30 133.7 70 100.0
FvH4_4g09260 Fragaria vesca HOM05D001712 ORTHO05D001731 3.4e-27 124.4 69 92.8
FAN12G0300 Fragaria x ananassa HOM05D001712 ORTHO05D001731 3.4e-27 124.4 69 92.8
FAN07G0756 Fragaria x ananassa HOM05D001712 ORTHO05D001731 1.3e-26 122.5 69 89.9
RcHm_v2.0_Chr7g0220311 Rosa chinensis HOM05D001712 ORTHO05D001731 4.2e-25 117.5 69 87.0
Hma1.2p1_1646F.1_g295490 Hydrangea macrophylla HOM05D001712 ORTHO05D001731 1.8e-20 102.1 68 70.6
Glyma.15G251300 Glycine max HOM05D001712 ORTHO05D001731 1.5e-19 99.0 69 72.5
Lj3g0013915 Lotus japonicus HOM05D001712 ORTHO05D001731 2.0e-19 98.6 68 72.1
Dinv42735 Davidia involucrata HOM05D001712 ORTHO05D001731 2.6e-19 98.2 68 72.1
Dinv43366 Davidia involucrata HOM05D001712 ORTHO05D001731 2.6e-19 98.2 68 72.1
arahy.Tifrunner.gnm1.ann1.RM06CW Arachis hypogaea HOM05D001712 ORTHO05D001731 3.4e-19 97.8 68 70.6
Prupe.1G088200 Prunus persica HOM05D001712 ORTHO05D001731 3.4e-19 97.8 68 69.1
VMungo1080G1556 Vigna mungo HOM05D001712 ORTHO05D001731 3.4e-19 97.8 69 69.6
Actinidia01415 Actinidia chinensis HOM05D001712 ORTHO05D001731 4.5e-19 97.4 69 69.6
CiPaw.07G191100 Carya illinoinensis HOM05D001712 ORTHO05D001731 5.9e-19 97.1 68 75.0
arahy.Tifrunner.gnm1.ann1.1AH909 Arachis hypogaea HOM05D001712 ORTHO05D001731 1.0e-18 96.3 68 69.1
TAR383G0543 Trochodendron aralioides HOM05D001712 ORTHO05D001731 1.0e-18 96.3 68 70.6
Ciclev10010369m.g Citrus clementina HOM05D001712 ORTHO05D001731 1.7e-18 95.5 68 69.1
Ciclev10010757m.g Citrus clementina HOM05D001712 ORTHO05D001731 2.2e-18 95.1 69 71.0
Phvul.005G052500 Phaseolus vulgaris HOM05D001712 ORTHO05D001731 2.2e-18 95.1 69 68.1
Potri.004G193400 Populus trichocarpa HOM05D001712 ORTHO05D001731 6.5e-18 93.6 68 70.6
Glyma.08G175400 Glycine max HOM05D001712 ORTHO05D001731 1.1e-17 92.8 66 71.2
TWI34G0556 Tripterygium wilfordii HOM05D001712 ORTHO05D001731 1.4e-17 92.4 69 71.0
Psat1g010760 Pisum sativum HOM05D001712 ORTHO05D001731 2.5e-17 91.7 66 68.2
TPR.G29758 Trifolium pratense HOM05D001712 ORTHO05D001731 3.2e-17 91.3 68 66.2
Cpa.g.sc233.18 Carica papaya HOM05D001712 ORTHO05D001731 4.2e-17 90.9 68 63.2
Ciclev10010452m.g Citrus clementina HOM05D001712 ORTHO05D001731 4.2e-17 90.9 68 67.6
Sabra04G0130500 Salix brachista HOM05D001712 ORTHO05D001731 4.2e-17 90.9 67 68.7
Sabra04G0131400 Salix brachista HOM05D001712 ORTHO05D001731 4.2e-17 90.9 67 68.7
Sabra04G0131500 Salix brachista HOM05D001712 ORTHO05D001731 4.2e-17 90.9 67 68.7
Ca_03462_v3 Cicer arietinum L. HOM05D001712 ORTHO05D001731 9.4e-17 89.7 68 64.7
COL.COLO4_04646 Corchorus olitorius HOM05D001712 ORTHO05D001731 1.6e-16 89.0 68 64.7
Gohir.A05G005400 Gossypium hirsutum HOM05D001712 ORTHO05D001731 1.6e-16 89.0 68 61.8
Ciclev10010328m.g Citrus clementina HOM05D001712 ORTHO05D001731 4.7e-16 87.4 68 64.7
Gorai.009G006100 Gossypium raimondii HOM05D001712 ORTHO05D001731 4.7e-16 87.4 68 60.3
Thecc.09G170500 Theobroma cacao HOM05D001712 ORTHO05D001731 6.1e-16 87.0 68 63.2
Atru.chr7.678 Acer truncatum HOM05D001712 ORTHO05D001731 8.0e-16 86.7 69 56.5
Lj6C284T4 Lonicera japonica HOM05D001712 ORTHO05D001731 8.0e-16 86.7 68 60.3
TWI63G0706 Tripterygium wilfordii HOM05D001712 ORTHO05D001731 8.0e-16 86.7 69 66.7
Gohir.D05G006200 Gossypium hirsutum HOM05D001712 ORTHO05D001731 1.4e-15 85.9 68 58.8
Medtr2g070310 Medicago truncatula HOM05D001712 ORTHO05D001731 1.4e-15 85.9 66 62.1
GSVIVG01029178001 Vitis vinifera HOM05D001712 ORTHO05D001731 3.0e-15 84.7 69 58.0
MBI14_g17351_MAGBIO Magnolia biondii HOM05D001712 ORTHO05D001731 3.9e-15 84.3 68 60.3
Manes.14G150600 Manihot esculenta HOM05D001712 ORTHO05D001731 6.7e-15 83.6 67 65.7
Lj9C689T18 Lonicera japonica HOM05D001712 ORTHO05D001731 8.8e-15 83.2 68 58.8
DCAR_020117 Daucus carota HOM05D001712 ORTHO05D001731 2.6e-14 81.6 68 54.4
MBI14_g17352_MAGBIO Magnolia biondii HOM05D001712 ORTHO05D001731 2.2e-13 78.6 62 59.7
Manes.14G150800 Manihot esculenta HOM05D001712 ORTHO05D001731 2.8e-13 78.2 68 58.8
Manes.14G151000 Manihot esculenta HOM05D001712 ORTHO05D001731 4.8e-13 77.4 70 61.4
CsaV3_1G031480 Cucumis sativus L. HOM05D001712 ORTHO05D001731 9.1e-12 73.2 68 54.4
Sed0021078 Sechium edule HOM05D001712 ORTHO05D001731 1.6e-11 72.4 69 52.2
MELO3C017475.2 Cucumis melo HOM05D001712 ORTHO05D001731 3.5e-11 71.2 69 53.6
ClCG06G013210 Citrullus lanatus HOM05D001712 ORTHO05D001731 1.3e-10 69.3 69 52.2
SEGI_02221 Sequoiadendron giganteum HOM05D001712 ORTHO05D001731 5.0e-10 67.4 62 54.8
ATR0796G028 Amborella trichopoda HOM05D001712 ORTHO05D001731 1.5e-09 65.9 62 53.2
SEGI_26353 Sequoiadendron giganteum HOM05D001712 ORTHO05D001731 5.5e-09 63.9 67 47.8
Gohir.D08G033600 Gossypium hirsutum HOM05D001712 ORTHO05D001731 2.1e-08 62.0 63 49.2
Gorai.004G031200 Gossypium raimondii HOM05D001712 ORTHO05D001731 2.1e-08 62.0 63 49.2
Zm00001eb014680 Zea mays HOM05D001712 ORTHO05D001731 2.1e-08 62.0 70 52.9
Zm00001eb014700 Zea mays HOM05D001712 ORTHO05D001731 2.1e-08 62.0 70 52.9
Gohir.A08G023100 Gossypium hirsutum HOM05D001712 ORTHO05D001731 3.6e-08 61.2 63 47.6
Zm00001eb396120 Zea mays HOM05D001712 ORTHO05D001731 4.7e-08 60.8 70 52.9
Hma1.2p1_0008F-1.1_g005600 Hydrangea macrophylla HOM05D001712 ORTHO05D001731 8.0e-08 60.1 62 50.0
Nn4g25596 Nelumbo nucifera HOM05D001712 ORTHO05D001731 8.0e-08 60.1 62 51.6
Zm00001eb396230 Zea mays HOM05D001712 ORTHO05D001731 8.0e-08 60.1 70 51.4
Zm00001eb396250 Zea mays HOM05D001712 ORTHO05D001731 8.0e-08 60.1 70 51.4
Zm00001eb396280 Zea mays HOM05D001712 ORTHO05D001731 8.0e-08 60.1 70 51.4
Aa31LG1G6050 Aethionema arabicum HOM05D001712 ORTHO05D001731 1.4e-07 59.3 63 47.6
Aa31sc76G70 Aethionema arabicum HOM05D001712 ORTHO05D001731 1.4e-07 59.3 63 47.6
Zm00001eb396110 Zea mays HOM05D001712 ORTHO05D001731 1.4e-07 59.3 56 58.9
Dinv30894 Davidia involucrata HOM05D001712 ORTHO05D001731 1.8e-07 58.9 62 46.8
CSS0041726 Camellia sinensis var. sinensis HOM05D001712 ORTHO05D001731 2.3e-07 58.5 62 46.8
TWI56G1441 Tripterygium wilfordii HOM05D001712 ORTHO05D001731 2.3e-07 58.5 62 50.0
ATR0730G081 Amborella trichopoda HOM05D001712 ORTHO05D001731 3.0e-07 58.2 68 41.2
Cpa.g.sc48.161 Carica papaya HOM05D001712 ORTHO05D001731 3.0e-07 58.2 62 50.0
MBI18_g17315_MAGBIO Magnolia biondii HOM05D001712 ORTHO05D001731 3.0e-07 58.2 62 48.4
PSO170G2364 Papaver somniferum HOM05D001712 ORTHO05D001731 3.0e-07 58.2 62 48.4
PSO170G4718 Papaver somniferum HOM05D001712 ORTHO05D001731 3.0e-07 58.2 62 48.4
PSO782G2604 Papaver somniferum HOM05D001712 ORTHO05D001731 3.0e-07 58.2 62 48.4
PSO782G3680 Papaver somniferum HOM05D001712 ORTHO05D001731 3.0e-07 58.2 62 48.4
Thecc.04G298800 Theobroma cacao HOM05D001712 ORTHO05D001731 3.0e-07 58.2 62 48.4
CDE01G0827 Ceratophyllum demersum HOM05D001712 ORTHO05D001731 4.0e-07 57.8 62 46.8
HanXRQChr12g0381661 Helianthus annuus HOM05D001712 ORTHO05D001731 4.0e-07 57.8 60 46.7
PSO541G2523 Papaver somniferum HOM05D001712 ORTHO05D001731 4.0e-07 57.8 62 48.4
PSO675G3485 Papaver somniferum HOM05D001712 ORTHO05D001731 4.0e-07 57.8 62 48.4
Actinidia35522 Actinidia chinensis HOM05D001712 ORTHO05D001731 5.2e-07 57.4 62 48.4
Aa31LG1G6060 Aethionema arabicum HOM05D001712 ORTHO05D001731 5.2e-07 57.4 63 47.6
Aqoxy2G02765 Aquilegia oxysepala HOM05D001712 ORTHO05D001731 5.2e-07 57.4 62 45.2
Lj1g0028156 Lotus japonicus HOM05D001712 ORTHO05D001731 5.2e-07 57.4 62 46.8
Lalb_Chr15g0077671 Lupinus albus HOM05D001712 ORTHO05D001731 5.2e-07 57.4 62 46.8
ClCG00G005370 Citrullus lanatus HOM05D001712 ORTHO05D001731 6.7e-07 57.0 65 50.8
Lalb_Chr21g0310301 Lupinus albus HOM05D001712 ORTHO05D001731 6.7e-07 57.0 62 48.4
PSO675G8464 Papaver somniferum HOM05D001712 ORTHO05D001731 6.7e-07 57.0 62 48.4
VMungo1383G0781 Vigna mungo HOM05D001712 ORTHO05D001731 6.7e-07 57.0 62 48.4
Duzib151G0322 Durio zibethinus HOM05D001712 ORTHO05D001731 8.8e-07 56.6 62 50.0
Migut.N01375 Erythranthe guttata HOM05D001712 ORTHO05D001731 8.8e-07 56.6 56 51.8
Lsat_1_v5_gn_7_75020 Lactuca sativa HOM05D001712 ORTHO05D001731 8.8e-07 56.6 69 40.6
Lsat_1_v5_gn_7_75101 Lactuca sativa HOM05D001712 ORTHO05D001731 8.8e-07 56.6 69 40.6
Lj6C284T5 Lonicera japonica HOM05D001712 ORTHO05D001731 8.8e-07 56.6 47 57.4
PSO541G2555 Papaver somniferum HOM05D001712 ORTHO05D001731 8.8e-07 56.6 62 48.4
PSO541G4581 Papaver somniferum HOM05D001712 ORTHO05D001731 8.8e-07 56.6 62 46.8
Prupe.6G313000 Prunus persica HOM05D001712 ORTHO05D001731 8.8e-07 56.6 62 46.8
TAR362G0010 Trochodendron aralioides HOM05D001712 ORTHO05D001731 8.8e-07 56.6 62 46.8
Duzib106G1224 Durio zibethinus HOM05D001712 ORTHO05D001731 1.2e-06 56.2 56 50.0
ECA234G2747 Erigeron canadensis HOM05D001712 ORTHO05D001731 1.2e-06 56.2 62 41.9
Lalb_Chr21g0317391 Lupinus albus HOM05D001712 ORTHO05D001731 1.2e-06 56.2 67 46.3
Lalb_Chr21g0317411 Lupinus albus HOM05D001712 ORTHO05D001731 1.2e-06 56.2 67 44.8
Manes.08G111200 Manihot esculenta HOM05D001712 ORTHO05D001731 1.2e-06 56.2 62 48.4
PSO210G3315 Papaver somniferum HOM05D001712 ORTHO05D001731 1.2e-06 56.2 62 48.4
PSO761G0328 Papaver somniferum HOM05D001712 ORTHO05D001731 1.2e-06 56.2 62 50.0
Psat0s1183g0200 Pisum sativum HOM05D001712 ORTHO05D001731 1.2e-06 56.2 62 46.8
TWI12G0867 Tripterygium wilfordii HOM05D001712 ORTHO05D001731 1.2e-06 56.2 62 48.4
CDE05G1036 Ceratophyllum demersum HOM05D001712 ORTHO05D001731 1.5e-06 55.8 62 46.8
ECA236G2543 Erigeron canadensis HOM05D001712 ORTHO05D001731 1.5e-06 55.8 69 40.6
Gohir.A11G273400 Gossypium hirsutum HOM05D001712 ORTHO05D001731 1.5e-06 55.8 56 53.6
Gohir.D11G283500 Gossypium hirsutum HOM05D001712 ORTHO05D001731 1.5e-06 55.8 56 53.6
Gorai.007G306400 Gossypium raimondii HOM05D001712 ORTHO05D001731 1.5e-06 55.8 56 53.6
Lsat_1_v5_gn_5_104220 Lactuca sativa HOM05D001712 ORTHO05D001731 1.5e-06 55.8 61 44.3
Os07g0689600 Oryza sativa ssp. japonica HOM05D001712 ORTHO05D001731 1.5e-06 55.8 68 48.5
EL10Ac4g09455 Beta vulgaris HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 46.8
AUR62000396 Chenopodium quinoa HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 46.8
AUR62006752 Chenopodium quinoa HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 46.8
FvH4_6g07450 Fragaria vesca HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 45.2
FAN05G4399 Fragaria x ananassa HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 45.2
FAN14G1452 Fragaria x ananassa HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 45.2
Medtr1g084050 Medicago truncatula HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 46.8
PSO357G0310 Papaver somniferum HOM05D001712 ORTHO05D001731 2.0e-06 55.5 69 42.0
QL03p008689 Quercus lobata HOM05D001712 ORTHO05D001731 2.0e-06 55.5 62 45.2
SGA_v2.0_scaffold5G02886 Striga asiatica HOM05D001712 ORTHO05D001731 2.0e-06 55.5 63 46.0
unitig_46.g18367 Utricularia gibba HOM05D001712 ORTHO05D001731 2.0e-06 55.5 56 51.8
Ah.04g158680 Amaranthus hybridus HOM05D001712 ORTHO05D001731 2.6e-06 55.1 62 45.2
arahy.Tifrunner.gnm1.ann1.M0RSZ5 Arachis hypogaea HOM05D001712 ORTHO05D001731 2.6e-06 55.1 62 41.9
COL.COLO4_05552 Corchorus olitorius HOM05D001712 ORTHO05D001731 2.6e-06 55.1 60 46.7
MELO3C004185.2 Cucumis melo HOM05D001712 ORTHO05D001731 2.6e-06 55.1 68 50.0
Migut.B00968 Erythranthe guttata HOM05D001712 ORTHO05D001731 2.6e-06 55.1 56 48.2
Os03g0307200 Oryza sativa ssp. japonica HOM05D001712 ORTHO05D001731 2.6e-06 55.1 56 53.6
Os03g0307300 Oryza sativa ssp. japonica HOM05D001712 ORTHO05D001731 2.6e-06 55.1 56 53.6
PSO210G3165 Papaver somniferum HOM05D001712 ORTHO05D001731 2.6e-06 55.1 62 48.4
TWI53G1250 Tripterygium wilfordii HOM05D001712 ORTHO05D001731 2.6e-06 55.1 62 46.8
CiPaw.07G029700 Carya illinoinensis HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 50.0
COL.COLO4_34635 Corchorus olitorius HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 46.8
Haze_04063 Corylus avellana HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 48.4
MD04G1215600 Malus domestica HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 45.2
Nitab4.5_0022042g0010 Nicotiana tabacum HOM05D001712 ORTHO05D001731 3.3e-06 54.7 56 46.4
Phvul.001G225000 Phaseolus vulgaris HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 46.8
RcHm_v2.0_Chr3g0457051 Rosa chinensis HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 43.5
SalBow7G2709 Salvia bowleyana HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 45.2
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 3.3e-06 54.7 62 43.5
Ah.06g195950 Amaranthus hybridus HOM05D001712 ORTHO05D001731 4.4e-06 54.3 62 45.2
BcaC06g32207 Brassica carinata HOM05D001712 ORTHO05D001731 4.4e-06 54.3 63 49.2
Cfa006704 Carpinus fangiana HOM05D001712 ORTHO05D001731 4.4e-06 54.3 62 46.8
Lalb_Chr21g0317401 Lupinus albus HOM05D001712 ORTHO05D001731 4.4e-06 54.3 67 44.8
Potri.005G014300 Populus trichocarpa HOM05D001712 ORTHO05D001731 4.4e-06 54.3 62 45.2
TPR.G2589 Trifolium pratense HOM05D001712 ORTHO05D001731 4.4e-06 54.3 62 45.2
ECA236G4808 Erigeron canadensis HOM05D001712 ORTHO05D001731 5.7e-06 53.9 69 39.1
Thhalv10014123m.g Eutrema salsugineum HOM05D001712 ORTHO05D001731 5.7e-06 53.9 63 49.2
Glyma.09G036400 Glycine max HOM05D001712 ORTHO05D001731 5.7e-06 53.9 70 42.9
Potri.010G143100 Populus trichocarpa HOM05D001712 ORTHO05D001731 5.7e-06 53.9 62 43.5
SalBow7G4727 Salvia bowleyana HOM05D001712 ORTHO05D001731 5.7e-06 53.9 62 43.5
CSS0042659 Camellia sinensis var. sinensis HOM05D001712 ORTHO05D001731 7.5e-06 53.5 63 47.6
Duzib177G0853 Durio zibethinus HOM05D001712 ORTHO05D001731 7.5e-06 53.5 60 45.0
HanXRQChr09g0249341 Helianthus annuus HOM05D001712 ORTHO05D001731 7.5e-06 53.5 60 41.7
HanXRQChr10g0301401 Helianthus annuus HOM05D001712 ORTHO05D001731 7.5e-06 53.5 61 41.0
MD12G1205900 Malus domestica HOM05D001712 ORTHO05D001731 7.5e-06 53.5 62 43.5
Nitab4.5_0000155g0090 Nicotiana tabacum HOM05D001712 ORTHO05D001731 7.5e-06 53.5 56 44.6
PSO170G5524 Papaver somniferum HOM05D001712 ORTHO05D001731 7.5e-06 53.5 69 40.6
QL03p013718 Quercus lobata HOM05D001712 ORTHO05D001731 7.5e-06 53.5 62 45.2
QL06p011787 Quercus lobata HOM05D001712 ORTHO05D001731 7.5e-06 53.5 62 45.2
CARHR208310 Cardamine hirsuta HOM05D001712 ORTHO05D001731 9.7e-06 53.1 58 51.7
Cpa.g.sc9.73 Carica papaya HOM05D001712 ORTHO05D001731 9.7e-06 53.1 62 45.2
Thhalv10024166m.g Eutrema salsugineum HOM05D001712 ORTHO05D001731 9.7e-06 53.1 57 49.1
Gorai.013G207700 Gossypium raimondii HOM05D001712 ORTHO05D001731 9.7e-06 53.1 56 50.0
Phvul.006G117300 Phaseolus vulgaris HOM05D001712 ORTHO05D001731 9.7e-06 53.1 56 46.4
PGR083G0633 Punica granatum HOM05D001712 ORTHO05D001731 9.7e-06 53.1 61 47.5
Sed0009008 Sechium edule HOM05D001712 ORTHO05D001731 9.7e-06 53.1 67 46.3


User provided reference genes

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