Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0402521 Rosa chinensis HOM05D001363 ORTHO05D006255 3.6e-65 251.5 135 100.0
RcHm_v2.0_Chr4g0402491 Rosa chinensis HOM05D001363 ORTHO05D006255 2.1e-36 156.0 81 95.1
MD14G1172600 Malus domestica HOM05D001363 ORTHO05D006255 1.3e-30 136.7 80 81.2
FAN07G0609 Fragaria x ananassa HOM05D001363 ORTHO05D006255 6.4e-30 134.4 81 80.2
FvH4_4g08251 Fragaria vesca HOM05D001363 ORTHO05D006255 1.9e-29 132.9 81 79.0
MD06G1167000 Malus domestica HOM05D001363 ORTHO05D006255 2.1e-28 129.4 80 77.5
ClCG11G012170 Citrullus lanatus HOM05D001363 ORTHO05D006255 2.9e-22 109.0 73 69.9
Manes.01G004820 Manihot esculenta HOM05D001363 ORTHO05D006255 3.8e-22 108.6 72 70.8
QL02p097661 Quercus lobata HOM05D001363 ORTHO05D006255 1.9e-21 106.3 80 62.5
Haze_22100 Corylus avellana HOM05D001363 ORTHO05D006255 3.2e-21 105.5 73 67.1
Cfa013508 Carpinus fangiana HOM05D001363 ORTHO05D006255 4.2e-21 105.1 73 67.1
Thecc.09G173000 Theobroma cacao HOM05D001363 ORTHO05D006255 4.2e-21 105.1 73 69.9
Sed0007175 Sechium edule HOM05D001363 ORTHO05D006255 5.4e-21 104.8 74 63.5
TWI34G1409 Tripterygium wilfordii HOM05D001363 ORTHO05D006255 5.4e-21 104.8 72 69.4
CsaV3_2G008370 Cucumis sativus L. HOM05D001363 ORTHO05D006255 9.3e-21 104.0 73 67.1
MELO3C004027.2 Cucumis melo HOM05D001363 ORTHO05D006255 1.6e-20 103.2 73 67.1
Eucgr.C00157 Eucalyptus grandis HOM05D001363 ORTHO05D006255 2.7e-20 102.4 72 63.9
Ciclev10008928m.g Citrus clementina HOM05D001363 ORTHO05D006255 4.6e-20 101.7 74 68.9
Atru.chr7.643 Acer truncatum HOM05D001363 ORTHO05D006255 6.0e-20 101.3 72 63.9
Sp6g19160 Schrenkiella parvula HOM05D001363 ORTHO05D006255 6.0e-20 101.3 72 63.9
AT5G57450 Arabidopsis thaliana HOM05D001363 ORTHO05D006255 1.0e-19 100.5 82 59.8
THA.LOC104813524 Tarenaya hassleriana HOM05D001363 ORTHO05D006255 1.3e-19 100.1 72 63.9
BcaC01g06488 Brassica carinata HOM05D001363 ORTHO05D006255 2.3e-19 99.4 72 62.5
BcaC01g06495 Brassica carinata HOM05D001363 ORTHO05D006255 2.3e-19 99.4 72 62.5
CiPaw.08G036500 Carya illinoinensis HOM05D001363 ORTHO05D006255 2.3e-19 99.4 80 60.0
Dinv41718 Davidia involucrata HOM05D001694 ORTHO05D000248 2.3e-19 99.4 81 61.7
Prupe.1G061700 Prunus persica HOM05D001363 ORTHO05D006255 2.3e-19 99.4 80 60.0
Cpa.g.sc95.51 Carica papaya HOM05D001363 ORTHO05D006255 5.1e-19 98.2 72 69.4
BolC3t13941H Brassica oleracea HOM05D001363 ORTHO05D006255 1.9e-18 96.3 72 61.1
arahy.Tifrunner.gnm1.ann1.YA5C6P Arachis hypogaea HOM05D001363 ORTHO05D006255 2.5e-18 95.9 80 56.2
A03p12830 Brassica napus HOM05D001363 ORTHO05D006255 2.5e-18 95.9 72 59.7
C03p14990 Brassica napus HOM05D001363 ORTHO05D006255 2.5e-18 95.9 72 59.7
BraA03t10591Z Brassica rapa HOM05D001363 ORTHO05D006255 2.5e-18 95.9 72 59.7
SHI41748 Sapria himalayana HOM05D001363 ORTHO05D006255 2.5e-18 95.9 71 60.6
CANSAT11G0841 Cannabis sativa HOM05D001363 ORTHO05D006255 3.3e-18 95.5 69 65.2
Gohir.A05G004600 Gossypium hirsutum HOM05D001363 ORTHO05D006255 3.3e-18 95.5 79 57.0
Potri.018G093100 Populus trichocarpa HOM05D001363 ORTHO05D006255 3.3e-18 95.5 72 62.5
Sabra18G0080300 Salix brachista HOM05D001363 ORTHO05D006255 3.3e-18 95.5 72 62.5
Gohir.D05G005500 Gossypium hirsutum HOM05D001363 ORTHO05D006255 4.3e-18 95.1 79 57.0
Gorai.009G005300 Gossypium raimondii HOM05D001363 ORTHO05D006255 4.3e-18 95.1 79 57.0
CARHR271240 Cardamine hirsuta HOM05D001363 ORTHO05D006255 5.6e-18 94.7 84 53.6
arahy.Tifrunner.gnm1.ann1.2PT66T Arachis hypogaea HOM05D001363 ORTHO05D006255 7.4e-18 94.4 80 56.2
Lj6g0018832 Lotus japonicus HOM05D001363 ORTHO05D006255 7.4e-18 94.4 72 61.1
COL.COLO4_30985 Corchorus olitorius HOM05D001363 ORTHO05D006255 9.6e-18 94.0 71 63.4
Thhalv10015458m.g Eutrema salsugineum HOM05D001363 ORTHO05D006255 9.6e-18 94.0 72 58.3
PGR142G0790 Punica granatum HOM05D001363 ORTHO05D006255 1.3e-17 93.6 72 62.5
Aa31LG3G13330 Aethionema arabicum HOM05D001363 ORTHO05D006255 2.8e-17 92.4 121 45.5
Glyma.18G288200 Glycine max HOM05D001363 ORTHO05D006255 2.8e-17 92.4 81 58.0
Actinidia38636 Actinidia chinensis HOM05D001363 ORTHO05D006255 3.6e-17 92.0 101 49.5
BcaC01g06492 Brassica carinata HOM05D001363 ORTHO05D006255 6.2e-17 91.3 67 65.7
Ca_12655_v3 Cicer arietinum L. HOM05D001363 ORTHO05D006255 8.1e-17 90.9 82 56.1
Lj9P685T22 Lonicera japonica HOM05D001363 ORTHO05D006255 2.4e-16 89.4 80 53.8
CSS0044369 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 3.1e-16 89.0 83 57.8
CSS0019343 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 9.0e-16 87.4 82 57.3
Nn2g12720 Nelumbo nucifera HOM05D001363 ORTHO05D006255 1.2e-15 87.0 81 51.9
Psat1g024320 Pisum sativum HOM05D001363 ORTHO05D006255 1.2e-15 87.0 81 51.9
EL10Ac4g08144 Beta vulgaris HOM05D001363 ORTHO05D006255 2.0e-15 86.3 73 56.2
Phvul.008G013800 Phaseolus vulgaris HOM05D001363 ORTHO05D006255 2.6e-15 85.9 75 58.7
Rhsim03G0264200 Rhododendron simsii HOM05D001363 ORTHO05D006255 3.4e-15 85.5 74 54.1
VMungo1383G3248 Vigna mungo HOM05D001363 ORTHO05D006255 3.4e-15 85.5 75 60.0
Cc06_g13270 Coffea canephora HOM05D001363 ORTHO05D006255 4.5e-15 85.1 79 53.2
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 5.8e-15 84.7 81 50.6
AUR62034263 Chenopodium quinoa HOM05D001363 ORTHO05D006255 7.6e-15 84.3 81 51.9
TAR625G1447 Trochodendron aralioides HOM05D001363 ORTHO05D006255 9.9e-15 84.0 80 50.0
Sc08g0005330 Simmondsia chinensis HOM05D001363 ORTHO05D006255 1.7e-14 83.2 73 56.2
vmacro06016 Vaccinium macrocarpon HOM05D001363 ORTHO05D006255 3.8e-14 82.0 116 41.4
Aqoxy2G00910 Aquilegia oxysepala HOM05D001363 ORTHO05D006255 4.9e-14 81.6 73 53.4
HanXRQChr05g0143031 Helianthus annuus HOM05D001363 ORTHO05D006255 6.4e-14 81.3 74 52.7
Medtr2g445230 Medicago truncatula HOM05D001363 ORTHO05D006255 1.1e-13 80.5 74 54.1
MBI14_g17365_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D006255 1.4e-13 80.1 74 52.7
PSO339G0974 Papaver somniferum HOM05D000001 ORTHO05D006255 1.9e-13 79.7 74 54.1
PSO801G0379 Papaver somniferum HOM05D001363 ORTHO05D006255 2.4e-13 79.3 74 52.7
Oeu056514.1 Olea europaea HOM05D001363 ORTHO05D006255 3.2e-13 79.0 80 52.5
Hund26352 Selenicereus undatus HOM05D001363 ORTHO05D006255 3.2e-13 79.0 81 50.6
Oeu002544.1 Olea europaea HOM05D001363 ORTHO05D006255 4.2e-13 78.6 80 51.2
MSTRG.19704 Avicennia marina HOM05D001363 ORTHO05D006255 5.5e-13 78.2 71 53.5
PGSC0003DMG400020439 Solanum tuberosum HOM05D001363 ORTHO05D006255 5.5e-13 78.2 76 50.0
TPR.G9532 Trifolium pratense HOM05D001363 ORTHO05D006255 5.5e-13 78.2 83 50.6
DCAR_014703 Daucus carota HOM05D001363 ORTHO05D006255 1.6e-12 76.6 71 56.3
BcaB01g04460 Brassica carinata HOM05D001363 ORTHO05D006255 2.7e-12 75.9 52 67.3
Migut.J01476 Erythranthe guttata HOM05D001363 ORTHO05D006255 2.7e-12 75.9 71 52.1
Lsat_1_v5_gn_8_66820 Lactuca sativa HOM05D001363 ORTHO05D006255 6.0e-12 74.7 84 50.0
Sopen07g027050 Solanum pennellii HOM05D000134 ORTHO05D003318 7.9e-12 74.3 74 50.0
unitig_0.g574 Utricularia gibba HOM05D001363 ORTHO05D006255 1.0e-11 73.9 71 49.3
ECA236G4924 Erigeron canadensis HOM05D001363 ORTHO05D006255 1.3e-11 73.6 84 47.6
SEGI_22217 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 2.3e-11 72.8 79 43.0
Solyc07g055170.1 Solanum lycopersicum HOM05D001363 ORTHO05D006255 2.3e-11 72.8 74 50.0
SGA_v2.0_scaffold66G22453 Striga asiatica HOM05D001363 ORTHO05D006255 3.0e-11 72.4 79 44.3
CAN.G1081.7 Capsicum annuum HOM05D001363 ORTHO05D006255 3.9e-11 72.0 75 48.0
SalBow6G0285 Salvia bowleyana HOM05D001363 ORTHO05D006255 8.7e-11 70.9 71 45.1
ATR0580G043 Amborella trichopoda HOM05D001363 ORTHO05D006255 2.5e-10 69.3 71 45.1
Peaxi162Scf00276g00065 Petunia axillaris HOM05D001363 ORTHO05D006255 2.5e-10 69.3 73 49.3
Peaxi162Scf00113g00112 Petunia axillaris HOM05D001363 ORTHO05D006255 2.1e-09 66.2 73 47.9
GSVIVG01029206001 Vitis vinifera HOM05D001363 ORTHO05D006255 2.8e-09 65.9 43 76.7
CBR_g28512 Chara braunii HOM05D001363 ORTHO05D006255 4.8e-09 65.1 71 42.3
Zm00001eb243950 Zea mays HOM05D001363 ORTHO05D006255 3.1e-08 62.4 117 37.6
Os02g0562100 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D006255 6.9e-08 61.2 114 37.7
Carub.0008s1796 Capsella rubella HOM05D001363 ORTHO05D006255 9.0e-08 60.8 42 64.3
Mapoly0009s0225 Marchantia polymorpha HOM05D001363 ORTHO05D006255 2.6e-07 59.3 72 43.1
Manes.01G004910 Manihot esculenta HOM05D001363 ORTHO05D006255 5.8e-07 58.2 85 43.5


User provided reference genes

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