Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0401931 Rosa chinensis HOM05D000070 ORTHO05D344074 2.6e-80 302.0 149 100.0
RcHm_v2.0_Chr6g0266001 Rosa chinensis HOM05D000070 ORTHO05D003315 3.2e-14 82.4 60 73.3
FAN20G2809 Fragaria x ananassa HOM05D000070 ORTHO05D003315 2.1e-13 79.7 60 70.0
FAN15G1835 Fragaria x ananassa HOM05D000070 ORTHO05D003315 2.7e-13 79.3 60 70.0
FvH4_2g09690 Fragaria vesca HOM05D000070 ORTHO05D003315 7.9e-13 77.8 60 68.3
FAN27G2131 Fragaria x ananassa HOM05D000070 ORTHO05D003315 7.9e-13 77.8 60 68.3
MD10G1068700 Malus domestica HOM05D000070 ORTHO05D003315 5.1e-12 75.1 58 67.2
Prupe.8G090700 Prunus persica HOM05D000070 ORTHO05D003315 3.3e-11 72.4 58 65.5
MD05G1060900 Malus domestica HOM05D000070 ORTHO05D003315 5.6e-11 71.6 58 65.5
Actinidia02231 Actinidia chinensis HOM05D000070 ORTHO05D003315 3.7e-10 68.9 58 60.3
RcHm_v2.0_Chr3g0485741 Rosa chinensis HOM05D000070 ORTHO05D030531 3.7e-10 68.9 60 65.0
TWI31G0054 Tripterygium wilfordii HOM05D000070 ORTHO05D003315 8.1e-10 67.8 58 62.1
CANSAT11G0352 Cannabis sativa HOM05D000070 ORTHO05D003315 1.1e-09 67.4 58 63.8
MD04G1152100 Malus domestica HOM05D000070 ORTHO05D003315 1.4e-09 67.0 60 60.0
Lalb_Chr23g0266491 Lupinus albus HOM05D000070 ORTHO05D003315 3.1e-09 65.9 57 59.6
Potri.004G158600 Populus trichocarpa HOM05D000070 ORTHO05D003315 4.0e-09 65.5 58 58.6
TWI79G1362 Tripterygium wilfordii HOM05D000070 ORTHO05D003315 5.3e-09 65.1 58 60.3
Cpa.g.sc106.1 Carica papaya HOM05D000070 ORTHO05D003315 6.9e-09 64.7 58 58.6
vmacro17458 Vaccinium macrocarpon HOM05D000070 ORTHO05D003315 6.9e-09 64.7 58 56.9
Lalb_Chr08g0245961 Lupinus albus HOM05D000070 ORTHO05D003315 9.0e-09 64.3 57 57.9
Actinidia00550 Actinidia chinensis HOM05D000070 ORTHO05D003315 1.5e-08 63.5 58 56.9
Atru.chr13.406 Acer truncatum HOM05D000070 ORTHO05D003315 2.0e-08 63.2 57 56.1
Rhsim05G0070900 Rhododendron simsii HOM05D000070 ORTHO05D003315 2.0e-08 63.2 58 55.2
Sed0010068 Sechium edule HOM05D000070 ORTHO05D003315 2.0e-08 63.2 54 57.4
TPR.G12325 Trifolium pratense HOM05D000070 ORTHO05D003315 2.0e-08 63.2 57 56.1
ECA234G0737 Erigeron canadensis HOM05D000070 ORTHO05D003315 2.6e-08 62.8 60 55.0
HanXRQChr03g0069341 Helianthus annuus HOM05D000070 ORTHO05D003315 2.6e-08 62.8 60 51.7
CSS0018015 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D003315 3.4e-08 62.4 59 57.6
CSS0033605 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D003315 3.4e-08 62.4 59 57.6
Ca_02078_v3 Cicer arietinum L. HOM05D000070 ORTHO05D003315 3.4e-08 62.4 57 56.1
ECA240G4316 Erigeron canadensis HOM05D000070 ORTHO05D003315 3.4e-08 62.4 58 56.9
GSVIVG01023828001 Vitis vinifera HOM05D000070 ORTHO05D003315 3.4e-08 62.4 58 55.2
arahy.Tifrunner.gnm1.ann1.DPB7ZS Arachis hypogaea HOM05D000070 ORTHO05D003315 4.5e-08 62.0 57 56.1
arahy.Tifrunner.gnm1.ann1.MMR4A8 Arachis hypogaea HOM05D000070 ORTHO05D003315 4.5e-08 62.0 57 56.1
CARHR180990 Cardamine hirsuta HOM05D000070 ORTHO05D003315 4.5e-08 62.0 58 58.6
CiPaw.05G069800 Carya illinoinensis HOM05D000070 ORTHO05D003315 4.5e-08 62.0 58 55.2
Haze_02326 Corylus avellana HOM05D000070 ORTHO05D003315 4.5e-08 62.0 58 55.2
Lalb_Chr11g0062191 Lupinus albus HOM05D000070 ORTHO05D003315 4.5e-08 62.0 57 56.1
Peaxi162Scf00016g00425 Petunia axillaris HOM05D000070 ORTHO05D003315 4.5e-08 62.0 58 55.2
PGR031G2028 Punica granatum HOM05D000070 ORTHO05D003315 4.5e-08 62.0 54 57.4
MBI10_g00747_MAGBIO Magnolia biondii HOM05D000070 ORTHO05D003315 5.8e-08 61.6 54 57.4
Manes.18G021301 Manihot esculenta HOM05D000070 ORTHO05D003315 5.8e-08 61.6 58 55.2
vmacro04302 Vaccinium macrocarpon HOM05D000070 ORTHO05D003315 5.8e-08 61.6 57 56.1
vmacro22854 Vaccinium macrocarpon HOM05D000070 ORTHO05D003315 5.8e-08 61.6 57 56.1
Atru.chr9.357 Acer truncatum HOM05D000070 ORTHO05D003315 7.6e-08 61.2 57 54.4
Aqoxy6G01197 Aquilegia oxysepala HOM05D000070 ORTHO05D003315 7.6e-08 61.2 54 57.4
Migut.N01261 Erythranthe guttata HOM05D000070 ORTHO05D003315 7.6e-08 61.2 60 51.7
COL.COLO4_26240 Corchorus olitorius HOM05D000070 ORTHO05D003315 9.9e-08 60.8 58 55.2
DCAR_023011 Daucus carota HOM05D000070 ORTHO05D003315 9.9e-08 60.8 58 56.9
Gohir.A03G080100 Gossypium hirsutum HOM05D000070 ORTHO05D003315 9.9e-08 60.8 57 56.1
Gohir.A05G190500 Gossypium hirsutum HOM05D000070 ORTHO05D003315 9.9e-08 60.8 57 56.1
Gorai.005G109900 Gossypium raimondii HOM05D000070 ORTHO05D003315 9.9e-08 60.8 57 56.1
Psat5g015560 Pisum sativum HOM05D000070 ORTHO05D003315 9.9e-08 60.8 57 54.4
SalBow3G4258 Salvia bowleyana HOM05D000070 ORTHO05D003315 9.9e-08 60.8 60 48.3
Solyc01g109940.3 Solanum lycopersicum HOM05D000070 ORTHO05D003315 9.9e-08 60.8 54 57.4
Sopen01g052130 Solanum pennellii HOM05D000070 ORTHO05D003315 9.9e-08 60.8 54 57.4
PGSC0003DMG400030960 Solanum tuberosum HOM05D000070 ORTHO05D003315 9.9e-08 60.8 54 57.4
GSVIVG01009774001 Vitis vinifera HOM05D000070 ORTHO05D003315 9.9e-08 60.8 57 54.4
arahy.Tifrunner.gnm1.ann1.5QJ4TD Arachis hypogaea HOM05D000070 ORTHO05D003315 1.3e-07 60.5 56 55.4
arahy.Tifrunner.gnm1.ann1.W7U0H3 Arachis hypogaea HOM05D000070 ORTHO05D003315 1.3e-07 60.5 56 55.4
Ciclev10001384m.g Citrus clementina HOM05D000070 ORTHO05D003315 1.3e-07 60.5 57 54.4
Haze_22558 Corylus avellana HOM05D003484 ORTHO05D004152 1.3e-07 60.5 59 52.5
MELO3C010970.2 Cucumis melo HOM05D000070 ORTHO05D003315 1.3e-07 60.5 56 53.6
Duzib116G0508 Durio zibethinus HOM05D000070 ORTHO05D003315 1.3e-07 60.5 57 56.1
Eucgr.F01600 Eucalyptus grandis HOM05D000070 ORTHO05D003315 1.3e-07 60.5 54 55.6
Gohir.A05G258316 Gossypium hirsutum HOM05D000070 ORTHO05D003315 1.3e-07 60.5 57 54.4
Gohir.D05G259801 Gossypium hirsutum HOM05D000070 ORTHO05D003315 1.3e-07 60.5 57 54.4
Gorai.009G271600 Gossypium raimondii HOM05D000070 ORTHO05D003315 1.3e-07 60.5 57 54.4
Lj1g0015561 Lotus japonicus HOM05D000070 ORTHO05D003315 1.3e-07 60.5 54 57.4
MBI16_g23835_MAGBIO Magnolia biondii HOM05D000044 ORTHO05D003315 1.3e-07 60.5 54 55.6
Manes.05G155000 Manihot esculenta HOM05D000070 ORTHO05D003315 1.3e-07 60.5 58 53.4
Medtr3g112260 Medicago truncatula HOM05D000070 ORTHO05D003315 1.3e-07 60.5 58 55.2
Sabra04G0105900 Salix brachista HOM05D000070 ORTHO05D003315 1.3e-07 60.5 58 53.4
Hund00239 Selenicereus undatus HOM05D000070 ORTHO05D003315 1.3e-07 60.5 60 56.7
ClCG08G014720 Citrullus lanatus HOM05D000070 ORTHO05D003315 1.7e-07 60.1 54 55.6
MELO3C030118.2 Cucumis melo HOM05D000070 ORTHO05D003315 1.7e-07 60.1 54 55.6
CsaV3_2G029050 Cucumis sativus L. HOM05D000070 ORTHO05D003315 1.7e-07 60.1 54 55.6
Glyma.04G029400 Glycine max HOM05D000070 ORTHO05D003315 1.7e-07 60.1 56 55.4
Glyma.06G029400 Glycine max HOM05D000070 ORTHO05D003315 1.7e-07 60.1 56 55.4
HanXRQChr12g0374321 Helianthus annuus HOM05D000070 ORTHO05D003315 1.7e-07 60.1 58 53.4
Nitab4.5_0005796g0020 Nicotiana tabacum HOM05D000070 ORTHO05D003315 1.7e-07 60.1 58 56.9
Cc02_g17230 Coffea canephora HOM05D000070 ORTHO05D003315 2.2e-07 59.7 58 55.2
Dinv42037 Davidia involucrata HOM05D000070 ORTHO05D003315 2.2e-07 59.7 59 55.9
Lsat_1_v5_gn_5_120460 Lactuca sativa HOM05D000070 ORTHO05D003315 2.2e-07 59.7 58 51.7
Nn5g29710 Nelumbo nucifera HOM05D000070 ORTHO05D003315 2.2e-07 59.7 54 57.4
Nitab4.5_0000029g0120 Nicotiana tabacum HOM05D000070 ORTHO05D003315 2.2e-07 59.7 57 56.1
Phvul.001G011400 Phaseolus vulgaris HOM05D000070 ORTHO05D003315 2.2e-07 59.7 57 52.6
Potri.009G120500 Populus trichocarpa HOM05D000070 ORTHO05D003315 2.2e-07 59.7 77 44.2
Thecc.08G033800 Theobroma cacao HOM05D000070 ORTHO05D003315 2.2e-07 59.7 57 54.4
VMungo0647G1835 Vigna mungo HOM05D000070 ORTHO05D003315 2.2e-07 59.7 57 52.6
Lalb_Chr14g0369541 Lupinus albus HOM05D000070 ORTHO05D003315 2.9e-07 59.3 57 52.6
Nitab4.5_0001317g0120 Nicotiana tabacum HOM05D000070 ORTHO05D003315 2.9e-07 59.3 60 55.0
Aa31LG9G13120 Aethionema arabicum HOM05D000070 ORTHO05D003315 3.8e-07 58.9 58 55.2
Aa31LG9G13130 Aethionema arabicum HOM05D000070 ORTHO05D003315 3.8e-07 58.9 55 58.2
BcaB07g30595 Brassica carinata HOM05D000070 ORTHO05D003315 3.8e-07 58.9 58 56.9
CAN.G1544.8 Capsicum annuum HOM05D000070 ORTHO05D003315 3.8e-07 58.9 54 55.6
Gohir.D02G096200 Gossypium hirsutum HOM05D000070 ORTHO05D003315 3.8e-07 58.9 57 54.4
Oeu041623.1 Olea europaea HOM05D000070 ORTHO05D003315 3.8e-07 58.9 60 50.0
TAR381G1663 Trochodendron aralioides HOM05D000070 ORTHO05D003315 3.8e-07 58.9 54 55.6
Dinv39457 Davidia involucrata HOM05D000070 ORTHO05D003315 4.9e-07 58.5 57 52.6
FvH4_3g45500 Fragaria vesca HOM05D000406 ORTHO05D003425 4.9e-07 58.5 32 87.5
FAN11G2103 Fragaria x ananassa HOM05D000406 ORTHO05D003425 4.9e-07 58.5 32 87.5
FAN16G3670 Fragaria x ananassa HOM05D000406 ORTHO05D003425 4.9e-07 58.5 32 87.5
FAN21G1971 Fragaria x ananassa HOM05D000406 ORTHO05D003425 4.9e-07 58.5 32 87.5
FAN25G3238 Fragaria x ananassa HOM05D000406 ORTHO05D003425 4.9e-07 58.5 32 87.5
Nitab4.5_0003234g0060 Nicotiana tabacum HOM05D000070 ORTHO05D003315 4.9e-07 58.5 58 55.2
Oeu046143.1 Olea europaea HOM05D000070 ORTHO05D003315 4.9e-07 58.5 58 51.7
Peaxi162Scf00003g00719 Petunia axillaris HOM05D000070 ORTHO05D003315 4.9e-07 58.5 58 55.2
RcHm_v2.0_Chr5g0083291 Rosa chinensis HOM05D000406 ORTHO05D003425 4.9e-07 58.5 32 87.5
Sed0004477 Sechium edule HOM05D000070 ORTHO05D003315 4.9e-07 58.5 54 53.7
TAR376G0806 Trochodendron aralioides HOM05D000070 ORTHO05D003315 4.9e-07 58.5 56 55.4
CSS0023561 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D003315 6.4e-07 58.2 54 57.4
CDE04G3711 Ceratophyllum demersum HOM05D000070 ORTHO05D003315 6.4e-07 58.2 56 53.6
CDE06G2317 Ceratophyllum demersum HOM05D000070 ORTHO05D003315 6.4e-07 58.2 56 53.6
Gohir.D05G193900 Gossypium hirsutum HOM05D000070 ORTHO05D003315 6.4e-07 58.2 57 54.4
Gorai.009G198900 Gossypium raimondii HOM05D000070 ORTHO05D003315 6.4e-07 58.2 57 54.4
Nitab4.5_0012022g0010 Nicotiana tabacum HOM05D000070 ORTHO05D003315 6.4e-07 58.2 57 54.4
BcaC03g16551 Brassica carinata HOM05D000070 ORTHO05D003315 8.4e-07 57.8 58 55.2
BcaC06g31732 Brassica carinata HOM05D000070 ORTHO05D003315 8.4e-07 57.8 58 55.2
C02p43690 Brassica napus HOM05D000070 ORTHO05D003315 8.4e-07 57.8 58 55.2
CsaV3_2G029040 Cucumis sativus L. HOM05D000070 ORTHO05D003315 8.4e-07 57.8 54 53.7
Duzib041G0366 Durio zibethinus HOM05D000070 ORTHO05D003315 8.4e-07 57.8 57 50.9
Duzib093G1071 Durio zibethinus HOM05D000070 ORTHO05D003315 8.4e-07 57.8 57 52.6
Nitab4.5_0005128g0040 Nicotiana tabacum HOM05D000070 ORTHO05D003315 8.4e-07 57.8 60 53.3
Phvul.009G060700 Phaseolus vulgaris HOM05D000070 ORTHO05D003315 8.4e-07 57.8 56 51.8
Potri.002G031400 Populus trichocarpa HOM05D000070 ORTHO05D003315 8.4e-07 57.8 58 53.4
VMungo1309G0952 Vigna mungo HOM05D000070 ORTHO05D003315 8.4e-07 57.8 56 51.8
AL8G17760 Arabidopsis lyrata HOM05D000070 ORTHO05D003315 1.1e-06 57.4 58 53.4
AT5G43010 Arabidopsis thaliana HOM05D000070 ORTHO05D003315 1.1e-06 57.4 58 53.4
A02p27630 Brassica napus HOM05D000070 ORTHO05D003315 1.1e-06 57.4 58 55.2
BolC2t10413H Brassica oleracea HOM05D000070 ORTHO05D003315 1.1e-06 57.4 58 55.2
BraA02t07797Z Brassica rapa HOM05D000070 ORTHO05D003315 1.1e-06 57.4 58 55.2
Carub.0008s0574 Capsella rubella HOM05D000070 ORTHO05D003315 1.1e-06 57.4 58 53.4
Cfa013878 Carpinus fangiana HOM05D000070 ORTHO05D003315 1.1e-06 57.4 57 50.9
CiPaw.13G176500 Carya illinoinensis HOM05D000406 ORTHO05D003425 1.1e-06 57.4 61 49.2
Hma1.2p1_0851F.1_g228410 Hydrangea macrophylla HOM05D000070 ORTHO05D003315 1.1e-06 57.4 58 53.4
Nn8g41134 Nelumbo nucifera HOM05D000070 ORTHO05D003315 1.1e-06 57.4 54 55.6
Peaxi162Scf00028g00194 Petunia axillaris HOM05D000070 ORTHO05D003315 1.1e-06 57.4 57 52.6
HPP92_003113 Vanilla planifolia HOM05D000070 ORTHO05D003315 1.1e-06 57.4 57 52.6
Dinv31787 Davidia involucrata HOM05D000070 ORTHO05D003315 1.4e-06 57.0 54 53.7
THA.LOC104822836 Tarenaya hassleriana HOM05D000070 ORTHO05D003315 1.4e-06 57.0 58 53.4
Aqoxy5G01551 Aquilegia oxysepala HOM05D000070 ORTHO05D003315 1.9e-06 56.6 50 58.0
MELO3C014724.2 Cucumis melo HOM05D000406 ORTHO05D003425 1.9e-06 56.6 64 46.9
Glyma.14G071000 Glycine max HOM05D000070 ORTHO05D003315 1.9e-06 56.6 54 53.7
Glyma.17G253600 Glycine max HOM05D000070 ORTHO05D003315 1.9e-06 56.6 54 53.7
Rhsim07G0242400 Rhododendron simsii HOM05D000070 ORTHO05D003315 1.9e-06 56.6 58 51.7
Rhsim07G0243000 Rhododendron simsii HOM05D000070 ORTHO05D003315 1.9e-06 56.6 58 51.7
BcaC02g10784 Brassica carinata HOM05D000070 ORTHO05D003315 2.4e-06 56.2 58 53.4
C04p25120 Brassica napus HOM05D000070 ORTHO05D003315 2.4e-06 56.2 58 53.4
BolC4t24016H Brassica oleracea HOM05D000070 ORTHO05D003315 2.4e-06 56.2 58 53.4
BraA06t27680Z Brassica rapa HOM05D000070 ORTHO05D003315 2.4e-06 56.2 58 53.4
CANSAT25G3384 Cannabis sativa HOM05D000070 ORTHO05D003315 2.4e-06 56.2 57 52.6
Migut.B00207 Erythranthe guttata HOM05D000070 ORTHO05D003315 3.2e-06 55.8 58 48.3
Lsat_1_v5_gn_9_107940 Lactuca sativa HOM05D000070 ORTHO05D003315 3.2e-06 55.8 59 50.8
QL02p009661 Quercus lobata HOM05D000070 ORTHO05D003315 3.2e-06 55.8 57 49.1
Sabra02G0025200 Salix brachista HOM05D000070 ORTHO05D003315 3.2e-06 55.8 58 51.7
Sp2g07780 Schrenkiella parvula HOM05D000070 ORTHO05D003315 3.2e-06 55.8 58 53.4
Hund06251 Selenicereus undatus HOM05D000070 ORTHO05D003315 3.2e-06 55.8 55 56.4
Sc18g0005140 Simmondsia chinensis HOM05D000070 ORTHO05D003315 3.2e-06 55.8 54 53.7
CiPaw.14G136200 Carya illinoinensis HOM05D000406 ORTHO05D003425 4.2e-06 55.5 61 47.5
CDE06G0282 Ceratophyllum demersum HOM05D000070 ORTHO05D003315 4.2e-06 55.5 58 50.0
Hma1.2p1_0469F.1_g158900 Hydrangea macrophylla HOM05D000070 ORTHO05D003315 4.2e-06 55.5 54 51.9
Lj5g0026627 Lotus japonicus HOM05D000070 ORTHO05D003315 4.2e-06 55.5 60 50.0
Psat5g005360 Pisum sativum HOM05D000070 ORTHO05D003315 4.2e-06 55.5 61 50.8
QL02p009707 Quercus lobata HOM05D000044 ORTHO05D337151 4.2e-06 55.5 56 50.0
MD03G1004300 Malus domestica HOM05D000406 ORTHO05D003425 5.5e-06 55.1 32 81.2
SGA_v2.0_scaffold58G20500 Striga asiatica HOM05D000070 ORTHO05D003315 5.5e-06 55.1 58 48.3
AL1G52630 Arabidopsis lyrata HOM05D000070 ORTHO05D003315 7.1e-06 54.7 58 51.7
AT1G45000 Arabidopsis thaliana HOM05D000070 ORTHO05D003315 7.1e-06 54.7 58 51.7
A06p48110 Brassica napus HOM05D000070 ORTHO05D003315 7.1e-06 54.7 58 51.7
Ca_15347_v3 Cicer arietinum L. HOM05D000070 ORTHO05D003315 7.1e-06 54.7 60 46.7
Ca_30248_v3 Cicer arietinum L. HOM05D000070 ORTHO05D003315 7.1e-06 54.7 60 46.7
CsaV3_4G017510 Cucumis sativus L. HOM05D000406 ORTHO05D003425 7.1e-06 54.7 64 45.3
SalBow6G2237 Salvia bowleyana HOM05D000070 ORTHO05D003315 7.1e-06 54.7 58 50.0
MSTRG.27684 Avicennia marina HOM05D000070 ORTHO05D003315 9.3e-06 54.3 58 51.7
ClCG02G024370 Citrullus lanatus HOM05D000406 ORTHO05D003425 9.3e-06 54.3 64 45.3
Sabra01G0003100 Salix brachista HOM05D000406 ORTHO05D003425 9.3e-06 54.3 36 69.4
THA.LOC104812563 Tarenaya hassleriana HOM05D000070 ORTHO05D003315 9.3e-06 54.3 58 51.7


User provided reference genes

Program Settings