Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1380.5 716 100.0
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1346.3 709 97.7
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1300.0 709 94.8
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1283.5 709 94.1
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1277.7 709 92.5
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1215.7 707 88.5
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1214.5 717 87.6
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 705 86.5
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1184.1 702 85.9
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1182.9 705 86.4
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1181.4 705 85.1
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1181.0 700 86.0
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1179.5 700 85.7
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1177.2 707 85.6
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1176.0 704 85.5
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1175.2 707 85.4
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1169.5 705 84.5
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1167.1 706 85.8
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1166.8 697 84.4
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1164.8 705 85.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1164.4 708 84.0
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1160.6 711 83.8
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1160.2 704 83.2
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1159.4 706 83.4
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1159.4 704 82.8
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1159.4 705 83.3
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1159.1 705 83.7
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1159.1 706 84.0
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1157.5 704 83.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1156.4 699 83.8
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1156.4 726 84.8
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1156.4 694 84.3
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1156.0 710 83.2
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1154.8 695 84.3
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1154.4 705 84.5
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1153.3 706 83.0
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1152.9 695 84.0
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1152.5 706 82.4
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1152.1 701 83.6
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1151.0 701 83.5
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1148.7 735 81.1
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1148.3 707 83.3
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1146.7 701 83.5
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1145.2 695 83.2
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1143.6 708 82.8
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1142.5 709 82.9
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1141.7 694 83.0
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1122.8 694 81.7
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1122.5 705 79.6
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1120.1 688 83.1
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1119.8 706 80.7
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 705 81.4
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 705 82.8
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 705 79.3
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1114.4 707 81.5
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1113.2 695 85.0
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 702 81.2
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1104.0 705 78.4
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 704 80.3
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1102.8 704 80.3
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1102.0 705 79.1
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1099.0 699 79.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 717 80.5
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 700 80.1
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1093.2 708 81.1
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 699 79.8
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1089.7 699 79.7
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1088.6 700 78.9
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1087.0 699 79.5
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1087.0 699 79.5
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1085.9 699 79.4
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1085.5 700 80.6
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1083.9 699 79.4
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1081.6 702 79.8
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1081.2 734 77.9
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1080.9 701 78.3
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1079.7 699 78.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1077.4 701 78.3
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1077.0 702 80.8
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1076.2 701 78.3
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 4.9e-312 1074.3 697 77.9
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 4.9e-312 1073.9 699 77.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 1.5e-311 1072.4 701 78.3
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 1.5e-311 1072.4 701 78.3
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 1.5e-311 1072.4 701 78.3
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 5.9e-311 1070.5 701 77.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.8e-310 1068.1 699 78.0
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 1.4e-309 1065.8 709 78.0
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.8e-309 1065.4 652 83.9
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 4.8e-302 1040.8 621 84.9
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 3.8e-299 1031.2 614 85.5
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 1.6e-297 1025.8 657 80.1
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.8e-297 1025.0 700 75.4
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 2.8e-297 1025.0 700 78.0
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 3.0e-296 1021.5 709 74.8
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 8.9e-296 1020.0 713 74.3
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 1.2e-295 1019.6 687 75.4
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.8e-294 1015.0 573 92.1
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 3.9e-291 1004.6 657 77.5
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.7e-286 988.0 707 71.3
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 3.7e-286 988.0 705 74.6
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.9e-286 987.6 699 72.2
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.1e-282 976.5 584 84.9
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.1e-277 957.2 732 71.6
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.5e-276 954.9 700 72.1
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 6.0e-276 954.1 644 75.0
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 9.5e-274 946.8 712 70.8
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.0e-272 941.4 541 88.0
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.0e-255 885.9 698 70.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.0e-255 885.9 735 67.1
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.3e-251 872.5 699 66.7
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 6.0e-236 821.2 525 80.4
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-233 812.8 566 72.4
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.2e-229 798.5 534 77.3
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 7.2e-221 771.2 448 89.1
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 6.1e-204 714.9 618 63.1
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 4.0e-203 712.2 671 55.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.8e-193 679.5 610 56.6
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.4e-192 677.2 557 68.8
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.7e-186 655.2 406 83.0
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.4e-184 649.8 392 84.7
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 3.0e-174 616.3 517 65.6
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 9.8e-170 601.3 629 49.4
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.5e-162 577.4 638 48.6
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.3e-158 563.5 637 48.0
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.9e-153 546.6 400 74.5
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 4.4e-138 496.1 633 43.1
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.1e-136 491.5 635 42.4
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.1e-135 487.3 641 42.3
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 3.9e-134 483.0 715 42.9
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.9e-128 464.2 621 42.8
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.5e-122 444.5 306 72.9
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.9e-106 389.4 399 52.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.6e-103 381.3 245 80.0
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.6e-101 374.0 399 57.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 9.4e-88 328.9 221 71.0
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.9e-68 263.5 224 64.7
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.5e-66 257.3 130 94.6
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.8e-54 218.4 171 71.3
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 6.4e-36 156.8 138 54.3
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-31 141.4 78 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 7.1e-27 126.7 92 66.3
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 4.3e-24 117.5 63 84.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 1.8e-22 112.1 59 86.4
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 2.9e-20 104.8 98 54.1
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 3.7e-15 87.8 56 73.2
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 4.5e-13 80.9 62 67.7
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 7.1e-11 73.6 59 62.7
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 7.1e-11 73.6 59 62.7
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 3.0e-09 68.2 55 65.5
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.9e-08 65.5 55 63.6
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

Program Settings