Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 2.6e-83 312.0 155 100.0
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 4.3e-70 268.1 164 85.4
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 2.4e-65 252.3 179 76.5
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 5.1e-63 244.6 168 78.0
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.1e-63 244.6 168 78.0
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.3e-62 240.7 169 75.7
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 6.8e-60 234.2 168 76.2
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 2.8e-53 212.2 166 68.7
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 2.4e-52 209.1 163 69.3
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 3.4e-51 205.3 166 63.3
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.2e-50 202.6 166 62.7
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 4.9e-50 201.4 166 62.0
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 1.1e-49 200.3 166 61.4
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 1.4e-49 199.9 173 59.0
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 5.4e-49 198.0 166 60.2
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 2.1e-48 196.1 166 60.2
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 2.7e-48 195.7 166 60.8
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 4.6e-48 194.9 166 58.4
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 6.0e-48 194.5 170 58.8
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 6.0e-48 194.5 163 60.1
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 7.8e-48 194.1 168 58.9
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 7.8e-48 194.1 166 60.8
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 1.0e-47 193.7 170 58.2
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 1.0e-47 193.7 165 60.0
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 3.0e-47 192.2 170 58.8
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 3.9e-47 191.8 170 58.2
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 5.1e-47 191.4 167 59.3
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 8.7e-47 190.7 170 57.6
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 8.7e-47 190.7 166 60.2
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 1.1e-46 190.3 172 58.1
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.1e-46 190.3 166 60.8
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.5e-46 189.9 168 57.7
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 1.5e-46 189.9 166 62.0
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 1.9e-46 189.5 166 58.4
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 2.5e-46 189.1 166 58.4
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 3.3e-46 188.7 166 59.6
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 3.3e-46 188.7 170 59.4
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 4.3e-46 188.3 167 59.3
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 4.3e-46 188.3 166 58.4
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 5.6e-46 188.0 168 57.7
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 5.6e-46 188.0 168 57.7
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 9.6e-46 187.2 166 57.2
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 9.6e-46 187.2 169 57.4
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 1.3e-45 186.8 169 56.8
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 1.6e-45 186.4 166 59.6
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 2.1e-45 186.0 166 59.0
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 2.1e-45 186.0 168 57.7
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 3.6e-45 185.3 166 56.0
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 4.8e-45 184.9 168 54.2
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 4.8e-45 184.9 168 56.5
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 6.2e-45 184.5 166 56.0
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 1.4e-44 183.3 163 56.4
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.4e-44 183.3 169 56.2
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 1.8e-44 183.0 167 55.7
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 1.8e-44 183.0 167 58.1
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 1.8e-44 183.0 172 55.8
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 1.8e-44 183.0 169 56.2
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 2.4e-44 182.6 166 59.0
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 2.4e-44 182.6 165 56.4
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 3.1e-44 182.2 166 58.4
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 3.1e-44 182.2 166 57.2
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 3.1e-44 182.2 166 57.8
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 9.0e-44 180.6 167 58.7
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 1.2e-43 180.3 169 56.2
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 1.5e-43 179.9 167 56.9
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 2.6e-43 179.1 165 55.8
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 2.6e-43 179.1 165 55.8
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 3.4e-43 178.7 169 53.3
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 4.4e-43 178.3 167 56.3
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 5.8e-43 177.9 168 56.0
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 5.8e-43 177.9 170 53.5
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 7.6e-43 177.6 164 56.1
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 7.6e-43 177.6 166 55.4
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 9.9e-43 177.2 165 55.2
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 1.3e-42 176.8 165 54.5
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 1.3e-42 176.8 166 54.2
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 2.9e-42 175.6 165 54.5
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 2.9e-42 175.6 166 56.0
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 2.9e-42 175.6 166 58.4
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 3.8e-42 175.3 165 53.9
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 3.8e-42 175.3 193 50.8
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 4.9e-42 174.9 165 53.3
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 6.4e-42 174.5 165 53.3
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 1.4e-41 173.3 169 54.4
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 4.2e-41 171.8 165 53.9
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 9.3e-41 170.6 167 53.9
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.2e-40 170.2 148 60.1
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.5e-40 168.7 168 53.0
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 6.0e-40 167.9 194 49.5
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.7e-39 166.4 168 51.8
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 2.3e-39 166.0 187 48.1
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 3.0e-39 165.6 168 53.6
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 3.0e-39 165.6 163 51.5
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 5.1e-39 164.9 198 46.5
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 6.6e-39 164.5 81 96.3
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 6.6e-39 164.5 80 96.2
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 4.3e-38 161.8 171 49.7
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 9.6e-38 160.6 151 56.3
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 8.1e-37 157.5 180 48.9
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 4.9e-34 148.3 166 47.0
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.1e-28 130.6 140 50.7
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 1.1e-28 130.6 197 38.1
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 2.4e-28 129.4 166 43.4
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 2.4e-28 129.4 150 49.3
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 6.9e-28 127.9 146 45.2
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 3.2e-25 119.0 166 42.2
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 1.0e-23 114.0 164 42.1
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 1.1e-22 110.5 122 50.0
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 4.3e-22 108.6 162 40.1
RcHm_v2.0_Chr1g0326961 Rosa chinensis HOM05D005646 ORTHO05D006828 1.6e-21 106.7 53 94.3
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 1.5e-19 100.1 78 61.5
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 3.4e-19 99.0 48 97.9
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.6e-16 90.1 67 61.2
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 1.8e-15 86.7 133 39.8
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 8.2e-13 77.8 69 52.2
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 7.7e-11 71.2 120 37.5
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 6.5e-10 68.2 42 71.4
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 1.9e-09 66.6 104 37.5
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.6e-08 63.5 122 33.6
COL.COLO4_03873 Corchorus olitorius HOM05D065443 ORTHO05D160768 7.4e-06 54.7 34 67.6


User provided reference genes

Program Settings