Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0400591 Rosa chinensis HOM05D004714 ORTHO05D005614 1.1e-18 95.5 45 100.0
FAN07G0359 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.1e-10 68.9 34 100.0
FAN12G0160 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.1e-10 68.9 34 100.0
Prupe.1G079700 Prunus persica HOM05D004714 ORTHO05D005614 1.1e-10 68.9 34 100.0
RcHm_v2.0_Chr4g0400331 Rosa chinensis HOM05D004714 ORTHO05D005614 1.1e-10 68.9 34 100.0
RcHm_v2.0_Chr4g0400411 Rosa chinensis HOM05D004714 ORTHO05D005614 1.1e-10 68.9 34 100.0
RcHm_v2.0_Chr4g0400471 Rosa chinensis HOM05D004714 ORTHO05D005614 1.1e-10 68.9 34 100.0
RcHm_v2.0_Chr4g0400651 Rosa chinensis HOM05D004714 ORTHO05D005614 1.1e-10 68.9 34 100.0
FAN17G0676 Fragaria x ananassa HOM05D004714 ORTHO05D005614 1.4e-10 68.6 34 97.1
FvH4_4g07660 Fragaria vesca HOM05D004714 ORTHO05D005614 2.5e-10 67.8 34 97.1
CANSAT11G1559 Cannabis sativa HOM05D004714 ORTHO05D005614 4.2e-10 67.0 34 91.2
CiPaw.08G034200 Carya illinoinensis HOM05D004714 ORTHO05D005614 4.2e-10 67.0 34 94.1
HanXRQChr05g0138351 Helianthus annuus HOM05D004714 ORTHO05D005614 4.2e-10 67.0 34 97.1
HanXRQChr06g0179551 Helianthus annuus HOM05D004714 ORTHO05D005614 4.2e-10 67.0 34 97.1
Ca_12516_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
Ca_12517_v3 Cicer arietinum L. HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
Duzib168G0788 Durio zibethinus HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
Glyma.08G214400 Glycine max HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
Gohir.A08G018200 Gossypium hirsutum HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
Gorai.004G025900 Gossypium raimondii HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
Lj3g0005475 Lotus japonicus HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
Psat7g257720 Pisum sativum HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
TWI32G1166 Tripterygium wilfordii HOM05D004714 ORTHO05D005614 5.5e-10 66.6 34 97.1
ECA236G1620 Erigeron canadensis HOM05D004714 ORTHO05D005614 7.1e-10 66.2 34 94.1
Medtr4g009880 Medicago truncatula HOM05D004714 ORTHO05D005614 9.3e-10 65.9 34 94.1
HanXRQChr10g0294251 Helianthus annuus HOM05D004714 ORTHO05D005614 1.2e-09 65.5 34 94.1
Lalb_Chr01g0012111 Lupinus albus HOM05D004714 ORTHO05D005614 1.2e-09 65.5 34 94.1
Phvul.010G157500 Phaseolus vulgaris HOM05D004714 ORTHO05D005614 1.2e-09 65.5 34 94.1
QL11p004848 Quercus lobata HOM05D004714 ORTHO05D005614 1.2e-09 65.5 33 97.0
vmacro19765 Vaccinium macrocarpon HOM05D004714 ORTHO05D005614 1.2e-09 65.5 36 88.9
arahy.Tifrunner.gnm1.ann1.72XQC0 Arachis hypogaea HOM05D004714 ORTHO05D005614 1.6e-09 65.1 34 91.2
arahy.Tifrunner.gnm1.ann1.ZK581Z Arachis hypogaea HOM05D004714 ORTHO05D005614 1.6e-09 65.1 34 91.2
CSS0001667 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 1.6e-09 65.1 34 94.1
Cpa.g.sc173.21 Carica papaya HOM05D004714 ORTHO05D005614 1.6e-09 65.1 34 94.1
Lj7C659G12 Lonicera japonica HOM05D004714 ORTHO05D005614 1.6e-09 65.1 34 94.1
Potri.018G088400 Populus trichocarpa HOM05D004714 ORTHO05D005614 1.6e-09 65.1 32 100.0
PGR142G4249 Punica granatum HOM05D004714 ORTHO05D005614 1.6e-09 65.1 34 94.1
Thecc.09G180100 Theobroma cacao HOM05D004714 ORTHO05D005614 1.6e-09 65.1 34 94.1
MD03G1036000 Malus domestica HOM05D004714 ORTHO05D005614 2.1e-09 64.7 34 91.2
MD13G1245000 Malus domestica HOM05D004714 ORTHO05D005614 2.1e-09 64.7 34 91.2
VMungo0331G1132 Vigna mungo HOM05D004714 ORTHO05D005614 2.1e-09 64.7 34 91.2
ClCG03G002280 Citrullus lanatus HOM05D004714 ORTHO05D005614 2.7e-09 64.3 34 91.2
MELO3C005041.2 Cucumis melo HOM05D004714 ORTHO05D005614 2.7e-09 64.3 34 91.2
CsaV3_1G012970 Cucumis sativus L. HOM05D004714 ORTHO05D005614 2.7e-09 64.3 34 91.2
Eucgr.I01084 Eucalyptus grandis HOM05D004714 ORTHO05D005614 2.7e-09 64.3 34 91.2
Glyma.07G028400 Glycine max HOM05D004714 ORTHO05D005614 2.7e-09 64.3 34 94.1
Rhsim08G0112000 Rhododendron simsii HOM05D004714 ORTHO05D005614 2.7e-09 64.3 36 86.1
Sabra18G0076900 Salix brachista HOM05D004714 ORTHO05D005614 2.7e-09 64.3 34 91.2
Cc05_g03940 Coffea canephora HOM05D004714 ORTHO05D005614 3.5e-09 63.9 34 91.2
DCAR_003032 Daucus carota HOM05D004714 ORTHO05D005614 3.5e-09 63.9 34 91.2
Dinv25399 Davidia involucrata HOM05D004714 ORTHO05D005614 3.5e-09 63.9 34 91.2
Nn4g22433 Nelumbo nucifera HOM05D004714 ORTHO05D005614 3.5e-09 63.9 33 93.9
Rhsim05G0122400 Rhododendron simsii HOM05D004714 ORTHO05D005614 3.5e-09 63.9 34 91.2
Sc24g0003530 Simmondsia chinensis HOM05D004714 ORTHO05D005614 3.5e-09 63.9 34 88.2
TAR623G1076 Trochodendron aralioides HOM05D004714 ORTHO05D005614 3.5e-09 63.9 34 91.2
Ciclev10009101m.g Citrus clementina HOM05D004714 ORTHO05D005614 4.6e-09 63.5 34 88.2
EL10Ac6g14222 Beta vulgaris HOM05D004714 ORTHO05D005614 6.1e-09 63.2 34 88.2
CSS0032245 Camellia sinensis var. sinensis HOM05D004714 ORTHO05D005614 6.1e-09 63.2 34 91.2
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.1e-09 63.2 31 96.8
GSVIVG01024342001 Vitis vinifera HOM05D004714 ORTHO05D005614 6.1e-09 63.2 34 91.2
Haze_14511 Corylus avellana HOM05D004714 ORTHO05D005614 7.9e-09 62.8 34 91.2
Duzib160G0192 Durio zibethinus HOM05D004714 ORTHO05D005614 7.9e-09 62.8 34 88.2
SGA_v2.0_scaffold63G21841 Striga asiatica HOM05D004714 ORTHO05D005614 7.9e-09 62.8 34 88.2
unitig_8.g4678 Utricularia gibba HOM05D004714 ORTHO05D005614 7.9e-09 62.8 34 88.2
AUR62014206 Chenopodium quinoa HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 82.4
AUR62041230 Chenopodium quinoa HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 82.4
Thhalv10014276m.g Eutrema salsugineum HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 88.2
Manes.14G158566 Manihot esculenta HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 88.2
SalBow4G0136 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 88.2
SalBow4G0166 Salvia bowleyana HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 88.2
Solyc01g081470.4 Solanum lycopersicum HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 88.2
Sopen01g033030 Solanum pennellii HOM05D004714 ORTHO05D005614 1.0e-08 62.4 34 88.2
Duzib168G1985 Durio zibethinus HOM05D004714 ORTHO05D005614 1.3e-08 62.0 32 87.5
MBI07_g09259_MAGBIO Magnolia biondii HOM05D004714 ORTHO05D005614 1.3e-08 62.0 34 85.3
Nn3g18335 Nelumbo nucifera HOM05D004714 ORTHO05D005614 1.3e-08 62.0 32 93.8
Aqoxy7G03753 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 85.3
AL8G33270 Arabidopsis lyrata HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 85.3
AT5G57300 Arabidopsis thaliana HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 85.3
CARHR271100 Cardamine hirsuta HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 85.3
Migut.L01902 Erythranthe guttata HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 85.3
PSO541G2874 Papaver somniferum HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 88.2
Sp6g19030 Schrenkiella parvula HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 85.3
THA.LOC104802911 Tarenaya hassleriana HOM05D004714 ORTHO05D005614 1.8e-08 61.6 34 85.3
Actinidia25713 Actinidia chinensis HOM05D004714 ORTHO05D005614 2.3e-08 61.2 34 85.3
CDE02G3847 Ceratophyllum demersum HOM05D004714 ORTHO05D005614 2.3e-08 61.2 34 85.3
Aa31LG3G13180 Aethionema arabicum HOM05D004714 ORTHO05D005614 3.0e-08 60.8 34 88.2
Mapoly0052s0093 Marchantia polymorpha HOM05D004714 ORTHO05D005614 3.0e-08 60.8 34 85.3
PSO675G7537 Papaver somniferum HOM05D004714 ORTHO05D005614 3.0e-08 60.8 32 87.5
PGSC0003DMG400031122 Solanum tuberosum HOM05D004714 ORTHO05D005614 3.0e-08 60.8 34 85.3
TPR.G38676 Trifolium pratense HOM05D004714 ORTHO05D005614 3.0e-08 60.8 30 96.7
MSTRG.10455 Avicennia marina HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
BcaB01g04462 Brassica carinata HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
BcaB08g36090 Brassica carinata HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
BcaC04g19980 Brassica carinata HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
A10p14730 Brassica napus HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
C09p49140 Brassica napus HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
BraA10t43556Z Brassica rapa HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
Carub.0008s1781 Capsella rubella HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
DCAR_002998 Daucus carota HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 85.3
Nitab4.5_0006785g0020 Nicotiana tabacum HOM05D004714 ORTHO05D005614 3.9e-08 60.5 32 87.5
Peaxi162Scf00907g00027 Petunia axillaris HOM05D004714 ORTHO05D005614 3.9e-08 60.5 34 82.4
ATR0686G131 Amborella trichopoda HOM05D004714 ORTHO05D005614 6.7e-08 59.7 34 82.4
Zm00001eb362110 Zea mays HOM05D004714 ORTHO05D005614 6.7e-08 59.7 34 82.4
Zm00001eb398140 Zea mays HOM05D004714 ORTHO05D005614 6.7e-08 59.7 34 82.4
Aqoxy7G03018 Aquilegia oxysepala HOM05D004714 ORTHO05D005614 8.7e-08 59.3 34 82.4
CAN.G992.24 Capsicum annuum HOM05D004714 ORTHO05D005614 8.7e-08 59.3 32 87.5
Oeu031756.1 Olea europaea HOM05D004714 ORTHO05D005614 8.7e-08 59.3 34 85.3
Pp3c3_21690 Physcomitrium patens HOM05D004714 ORTHO05D005614 8.7e-08 59.3 34 82.4
BcaC03g14165 Brassica carinata HOM05D004714 ORTHO05D005614 1.5e-07 58.5 34 79.4
A03p12900 Brassica napus HOM05D004714 ORTHO05D005614 1.5e-07 58.5 34 79.4
C02p14380 Brassica napus HOM05D004714 ORTHO05D005614 1.5e-07 58.5 34 79.4
C03p15050 Brassica napus HOM05D004714 ORTHO05D005614 1.5e-07 58.5 34 79.4
BolC3t13947H Brassica oleracea HOM05D004714 ORTHO05D005614 1.5e-07 58.5 34 79.4
BraA03t10598Z Brassica rapa HOM05D004714 ORTHO05D005614 1.5e-07 58.5 34 79.4
Os01g0976600 Oryza sativa ssp. japonica HOM05D004714 ORTHO05D005614 1.5e-07 58.5 34 79.4
BolC9t57763H Brassica oleracea HOM05D004714 ORTHO05D005614 1.9e-07 58.2 34 79.4
QL08p018134 Quercus lobata HOM05D004714 ORTHO05D005614 1.9e-07 58.2 29 96.6
A02p08610 Brassica napus HOM05D004714 ORTHO05D005614 4.3e-07 57.0 34 76.5
BraA02t05930Z Brassica rapa HOM05D004714 ORTHO05D005614 4.3e-07 57.0 34 76.5
CBR_g3967 Chara braunii HOM05D004714 ORTHO05D005614 4.3e-07 57.0 34 76.5
COL.COLO4_25457 Corchorus olitorius HOM05D004714 ORTHO05D005614 4.3e-07 57.0 28 96.4
SEGI_34543 Sequoiadendron giganteum HOM05D004714 ORTHO05D005614 4.3e-07 57.0 34 76.5
SHI02880 Sapria himalayana HOM05D004714 ORTHO05D005614 5.7e-07 56.6 34 73.5
COL.COLO4_36489 Corchorus olitorius HOM05D004714 ORTHO05D005614 1.3e-06 55.5 34 73.5
BolC2t07562H Brassica oleracea HOM05D004714 ORTHO05D005614 1.6e-06 55.1 34 76.5


User provided reference genes

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