Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 0.0e+00 1341.6 774 100.0
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 0.0e+00 1231.1 774 88.4
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1163.7 858 77.6
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1116.3 835 76.8
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 0.0e+00 1095.5 774 81.9
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 7.1e-307 1057.0 781 71.6
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 3.1e-254 882.1 715 63.9
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 7.4e-248 860.9 712 62.4
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 1.2e-245 853.6 807 56.4
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.1e-242 842.8 725 60.7
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 3.6e-242 842.0 657 65.9
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 3.6e-242 842.0 665 65.3
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-241 839.7 721 60.3
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 4.4e-240 835.1 590 69.3
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 2.8e-239 832.4 600 67.5
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 4.8e-239 831.6 596 66.6
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.6e-237 826.6 711 61.7
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.7e-237 825.9 598 67.1
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 7.7e-237 824.3 659 62.5
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 6.5e-236 821.2 780 57.3
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 1.5e-235 820.1 598 66.4
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 8.0e-234 814.3 596 67.4
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 1.5e-232 810.1 597 65.3
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.6e-232 809.3 597 65.7
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.4e-232 808.9 583 66.9
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 5.7e-232 808.1 583 67.2
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.1e-230 803.9 711 62.7
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 3.1e-230 802.4 583 66.4
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 2.7e-229 799.3 774 54.3
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 2.7e-229 799.3 781 54.7
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 1.3e-228 797.0 597 65.5
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.7e-228 796.6 597 66.0
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 5.5e-227 791.6 661 59.5
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 2.7e-226 789.3 661 59.2
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 8.0e-226 787.7 597 64.2
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.3e-225 786.2 597 65.3
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 1.5e-224 783.5 594 64.5
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 6.3e-223 778.1 578 65.7
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 4.1e-222 775.4 657 60.1
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.3e-220 769.6 597 62.8
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 1.9e-219 766.5 657 59.5
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 3.3e-219 765.8 665 59.7
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 5.2e-217 758.4 598 62.9
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 6.8e-217 758.1 615 60.3
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.0e-216 756.5 725 56.8
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 3.4e-216 755.7 547 67.5
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 9.8e-216 754.2 596 62.2
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 4.9e-215 751.9 596 64.6
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 6.4e-215 751.5 663 57.0
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 1.4e-214 750.4 596 62.1
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 4.1e-214 748.8 596 63.8
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 7.0e-214 748.0 718 57.8
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 2.7e-213 746.1 598 61.4
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 2.7e-213 746.1 598 61.5
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 1.0e-212 744.2 598 60.9
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 3.6e-210 735.7 598 60.4
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 1.0e-209 734.2 712 55.9
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 1.0e-209 734.2 657 57.2
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 1.0e-209 734.2 661 56.7
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 1.4e-209 733.8 723 56.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 2.0e-208 729.9 597 60.6
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 2.0e-208 729.9 578 63.3
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 3.4e-208 729.2 605 66.4
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.4e-208 728.8 749 51.8
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 5.8e-208 728.4 596 61.4
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.4e-206 723.8 596 62.4
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 4.6e-205 718.8 572 61.7
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 1.7e-204 716.8 574 62.5
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 6.2e-202 708.4 594 60.6
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 8.9e-201 704.5 1004 43.3
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 2.2e-199 699.9 573 59.7
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 1.1e-195 687.6 588 58.7
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 1.1e-195 687.6 586 57.3
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 2.5e-195 686.4 598 58.4
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 6.2e-194 681.8 595 58.2
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 3.2e-190 669.5 521 63.0
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 5.4e-190 668.7 504 64.1
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 9.2e-190 667.9 662 54.1
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.2e-184 651.0 594 55.1
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 5.8e-184 648.7 709 50.9
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 7.6e-184 648.3 383 83.3
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.3e-179 632.9 592 53.5
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 5.6e-179 632.1 596 56.0
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 4.9e-175 619.0 577 53.6
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.2e-174 616.3 679 51.7
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 9.3e-174 614.8 596 53.7
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 6.2e-170 602.1 585 52.5
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 8.1e-170 601.7 598 52.3
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 2.4e-161 573.5 590 50.2
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.4e-161 573.5 643 48.7
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 2.0e-160 570.5 624 48.9
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 1.0e-159 568.2 581 52.3
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 5.1e-156 555.8 583 47.3
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 4.5e-152 542.7 530 54.0
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.5e-150 537.0 579 48.2
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.1e-149 533.9 385 68.1
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 2.7e-149 533.5 584 48.1
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 4.2e-142 509.6 407 63.1
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.0e-136 490.7 494 53.4
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 3.6e-133 479.9 615 42.3
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.3e-124 450.7 537 45.6
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 2.7e-120 437.2 604 43.4
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.5e-118 430.6 330 64.8
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 3.7e-114 416.8 357 59.9
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 1.4e-113 414.8 318 64.5
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.6e-112 411.4 336 58.6
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.5e-110 402.9 293 64.2
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 6.1e-101 372.9 408 55.9
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 8.0e-101 372.5 392 53.3
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.1e-97 362.1 501 41.5
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 3.6e-93 347.1 438 42.0
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 3.1e-92 344.0 521 37.8
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 3.4e-91 340.5 493 40.2
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.4e-89 335.1 358 50.0
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 2.3e-84 317.8 306 55.2
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 6.8e-84 316.2 573 35.4
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 6.4e-82 309.7 281 56.2
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.1e-76 292.4 523 37.9
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 8.7e-71 272.7 567 30.0
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 1.1e-65 255.8 369 47.4
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.6e-63 246.5 215 58.1
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 2.0e-59 235.0 156 71.2
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 5.8e-59 233.4 208 59.6
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 6.4e-58 229.9 155 70.3
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.3e-53 215.7 147 68.7
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 2.1e-53 214.9 326 41.7
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 2.8e-53 214.5 135 74.1
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 1.4e-52 212.2 146 70.5
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.4e-52 212.2 189 52.4
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 3.1e-52 211.1 287 42.2
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 2.0e-51 208.4 357 39.5
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.0e-51 208.4 197 54.3
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 2.5e-46 191.4 249 45.8
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 4.3e-46 190.7 185 55.1
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.4e-44 184.9 207 50.2
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 1.1e-38 166.0 303 37.0
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 7.6e-35 153.3 118 66.1
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.0e-31 142.9 92 73.9
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 5.1e-31 140.6 84 79.8
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 1.5e-30 139.0 303 35.3
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-28 132.1 101 64.4
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.8e-28 132.1 82 73.2
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.5e-27 129.0 108 55.6
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 5.9e-27 127.1 117 55.6
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 6.5e-26 123.6 232 34.1
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 4.7e-24 117.5 85 63.5
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.0e-23 114.8 86 65.1
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.0e-22 112.1 105 60.0
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 3.7e-21 107.8 70 71.4
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 2.6e-19 101.7 70 74.3
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 8.5e-18 96.7 86 54.7
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 5.2e-15 87.4 94 51.1
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 4.2e-09 67.8 106 40.6
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 8.0e-08 63.5 97 40.2


User provided reference genes

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