Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 7.7e-130 467.2 250 100.0
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.3e-116 423.3 250 90.4
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 3.5e-114 415.2 250 89.6
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 5.9e-114 414.5 257 87.9
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 8.6e-113 410.6 252 87.3
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 5.2e-110 401.4 255 87.1
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 3.0e-105 385.6 251 81.3
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 5.1e-89 331.6 231 75.8
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 4.9e-84 315.1 243 68.7
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 1.9e-83 313.2 243 69.5
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 1.9e-83 313.2 243 69.5
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 9.6e-80 300.8 251 64.9
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 1.4e-78 297.0 251 64.1
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 1.8e-78 296.6 248 64.5
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 5.3e-78 295.0 245 62.0
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 5.3e-78 295.0 248 64.5
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 6.9e-78 294.7 243 66.7
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 1.4e-75 287.0 246 63.0
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 5.4e-75 285.0 244 63.1
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 7.1e-75 284.6 248 61.3
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 2.1e-74 283.1 251 62.2
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 9.6e-72 274.2 247 59.9
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 9.6e-72 274.2 247 59.9
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 8.1e-71 271.2 244 62.7
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 1.4e-70 270.4 249 56.6
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 1.2e-69 267.3 250 56.4
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 1.5e-69 266.9 253 61.3
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 2.0e-69 266.5 244 59.8
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 4.5e-69 265.4 250 56.8
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 4.5e-69 265.4 250 57.6
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 1.3e-68 263.8 244 59.0
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 3.8e-68 262.3 249 56.6
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 4.9e-68 261.9 244 59.0
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 1.1e-67 260.8 244 58.2
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 1.1e-67 260.8 251 57.4
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 1.4e-67 260.4 244 59.0
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 3.2e-67 259.2 244 59.0
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 7.1e-67 258.1 244 57.4
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 9.3e-67 257.7 250 55.6
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 1.2e-66 257.3 244 59.4
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 1.2e-66 257.3 244 58.2
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 2.7e-66 256.1 244 58.6
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 3.5e-66 255.8 250 56.8
CANSAT56G2223 Cannabis sativa HOM05D007474 ORTHO05D009367 1.0e-65 254.2 244 57.4
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 3.0e-65 252.7 244 57.8
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 3.0e-65 252.7 244 54.5
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 5.1e-65 251.9 240 57.1
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 8.7e-65 251.1 270 53.3
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 1.9e-64 250.0 245 57.1
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 2.8e-63 246.1 262 54.2
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 2.8e-63 246.1 244 56.1
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 4.8e-63 245.4 248 57.7
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 8.1e-63 244.6 249 54.6
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 1.1e-62 244.2 245 53.5
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 4.0e-62 242.3 214 60.3
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 1.5e-61 240.4 253 56.9
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 4.5e-61 238.8 238 54.2
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 2.2e-60 236.5 239 52.3
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 1.4e-59 233.8 248 54.8
QL04p010614 Quercus lobata HOM05D007474 ORTHO05D009367 4.2e-59 232.3 248 57.3
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 3.5e-58 229.2 227 53.3
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 3.5e-58 229.2 295 47.5
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 5.1e-57 225.3 227 52.9
Sabra18G0115300 Salix brachista HOM05D007474 ORTHO05D009367 1.1e-56 224.2 195 61.0
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 2.5e-56 223.0 255 52.2
BcaC06g32774 Brassica carinata HOM05D007474 ORTHO05D009367 2.4e-54 216.5 244 52.0
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 1.1e-51 207.6 244 50.0
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 5.5e-51 205.3 226 51.8
MBI16_g28190_MAGBIO Magnolia biondii HOM05D007474 ORTHO05D009367 7.2e-51 204.9 202 56.9
BraA03t14710Z Brassica rapa HOM05D007474 ORTHO05D009367 3.6e-50 202.6 256 47.7
PGR142G0563 Punica granatum HOM05D007474 ORTHO05D009367 3.0e-49 199.5 259 49.4
COL.COLO4_06926 Corchorus olitorius HOM05D007474 ORTHO05D009367 8.7e-49 198.0 201 57.7
Nitab4.5_0000056g0090 Nicotiana tabacum HOM05D007474 ORTHO05D009367 1.1e-48 197.6 272 44.5
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 1.6e-47 193.7 197 55.8
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 2.8e-47 193.0 246 43.9
EL10Ac2g04755 Beta vulgaris HOM05D007474 ORTHO05D009367 3.4e-45 186.0 246 46.7
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 5.0e-44 182.2 246 43.1
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 1.4e-43 180.6 248 45.6
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 6.1e-42 175.3 248 44.8
CSS0031812 Camellia sinensis var. sinensis HOM05D007474 ORTHO05D009367 3.1e-38 162.9 145 60.0
Ah.09g225720 Amaranthus hybridus HOM05D007474 ORTHO05D009367 4.5e-37 159.1 248 41.5
Eucgr.C00103 Eucalyptus grandis HOM05D007474 ORTHO05D009367 4.5e-37 159.1 143 59.4
AUR62039384 Chenopodium quinoa HOM05D007474 ORTHO05D009367 5.9e-37 158.7 235 43.0
Potri.018G141166 Populus trichocarpa HOM05D007474 ORTHO05D009367 1.7e-36 157.1 127 65.4
vmacro20808 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 9.4e-35 151.4 144 56.9
Potri.018G141232 Populus trichocarpa HOM05D007474 ORTHO05D009367 4.7e-34 149.1 126 61.9
Hma1.2p1_0140F.1_g063730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 1.8e-30 137.1 119 61.3
PGR142G3816 Punica granatum HOM05D007474 ORTHO05D009367 2.2e-28 130.2 121 57.9
Ca_02115_v3 Cicer arietinum L. HOM05D007474 ORTHO05D009367 3.6e-26 122.9 126 50.8
Hund13756 Selenicereus undatus HOM05D007474 ORTHO05D009367 2.8e-23 113.2 134 46.3
Lj4A313T24 Lonicera japonica HOM05D007474 ORTHO05D009367 9.4e-19 98.2 71 70.4
Actinidia07550 Actinidia chinensis HOM05D007474 ORTHO05D009367 3.6e-18 96.3 78 60.3
AUR62004543 Chenopodium quinoa HOM05D007474 ORTHO05D009367 4.0e-17 92.8 171 38.6
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 1.2e-16 91.3 243 27.6
QL04p011351 Quercus lobata HOM05D000009 ORTHO05D000008 2.2e-15 87.0 96 54.2
TWI63G1298 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 2.8e-15 86.7 108 47.2
Lju170C0T1 Lonicera japonica HOM05D007424 ORTHO05D009367 5.0e-12 75.9 115 40.9
Mapoly0011s0196 Marchantia polymorpha HOM05D007474 ORTHO05D009367 1.9e-11 73.9 259 25.9
vmacro20809 Vaccinium macrocarpon HOM05D007474 ORTHO05D009367 1.6e-10 70.9 55 63.6
arahy.Tifrunner.gnm1.ann1.245C1J Arachis hypogaea HOM05D007474 ORTHO05D009367 5.2e-09 65.9 66 48.5
arahy.Tifrunner.gnm1.ann1.TVY351 Arachis hypogaea HOM05D007474 ORTHO05D009367 6.8e-09 65.5 61 52.5
Eucgr.C00104 Eucalyptus grandis HOM05D007474 ORTHO05D009367 4.9e-07 59.3 57 54.4
Actinidia07549 Actinidia chinensis HOM05D007474 ORTHO05D009367 6.3e-07 58.9 47 59.6


User provided reference genes

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