Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0398451 Rosa chinensis HOM05D007669 ORTHO05D009624 0.0e+00 1508.4 761 100.0
FAN17G0559 Fragaria x ananassa HOM05D007669 ORTHO05D009624 0.0e+00 1229.5 772 81.7
FAN07G2841 Fragaria x ananassa HOM05D007669 ORTHO05D009624 0.0e+00 1222.2 772 81.1
MD13G1236300 Malus domestica HOM05D007669 ORTHO05D009624 7.2e-304 1047.0 773 69.3
FAN22G2123 Fragaria x ananassa HOM05D007669 ORTHO05D009624 1.3e-300 1036.2 612 82.4
FvH4_4g06530 Fragaria vesca HOM05D007669 ORTHO05D009624 1.1e-272 943.3 549 83.2
Prupe.1G068100 Prunus persica HOM05D007669 ORTHO05D009624 2.7e-266 922.2 615 73.3
Cfa013482 Carpinus fangiana HOM05D007669 ORTHO05D009624 9.3e-235 817.4 774 54.3
Dinv25484 Davidia involucrata HOM05D007669 ORTHO05D009624 1.3e-220 770.4 760 52.6
QL11p009976 Quercus lobata HOM05D007669 ORTHO05D009624 2.1e-210 736.5 894 46.6
TWI34G1867 Tripterygium wilfordii HOM05D007669 ORTHO05D009624 5.1e-209 731.9 775 51.2
Ciclev10007518m.g Citrus clementina HOM05D007669 ORTHO05D009624 1.5e-208 730.3 755 51.8
Sabra18G0113000 Salix brachista HOM05D007669 ORTHO05D009624 4.5e-205 718.8 742 50.9
Potri.018G133300 Populus trichocarpa HOM05D007669 ORTHO05D009624 2.2e-204 716.5 740 51.2
CANSAT11G2077 Cannabis sativa HOM05D007669 ORTHO05D009624 1.5e-197 693.7 778 50.3
GSVIVG01029262001 Vitis vinifera HOM05D007669 ORTHO05D009624 2.0e-197 693.3 788 48.0
Gohir.D05G246300 Gossypium hirsutum HOM05D007669 ORTHO05D009624 8.5e-196 688.0 715 49.4
Gorai.009G262500 Gossypium raimondii HOM05D007669 ORTHO05D009624 2.5e-195 686.4 715 49.2
Lj4g0015120 Lotus japonicus HOM05D007669 ORTHO05D009624 2.1e-194 683.3 779 48.4
Gohir.A05G248100 Gossypium hirsutum HOM05D007669 ORTHO05D009624 2.3e-193 679.9 738 48.5
Duzib177G0349 Durio zibethinus HOM05D007669 ORTHO05D009624 5.1e-193 678.7 738 48.8
Lalb_Chr07g0180781 Lupinus albus HOM05D007669 ORTHO05D009624 1.1e-192 677.6 777 48.3
Manes.14G174400 Manihot esculenta HOM05D007669 ORTHO05D009624 2.4e-190 669.8 775 47.0
arahy.Tifrunner.gnm1.ann1.BQQL35 Arachis hypogaea HOM05D007669 ORTHO05D009624 4.1e-190 669.1 776 46.9
TPR.G5403 Trifolium pratense HOM05D007669 ORTHO05D009624 1.2e-189 667.5 769 47.6
arahy.Tifrunner.gnm1.ann1.YI9GDS Arachis hypogaea HOM05D007669 ORTHO05D009624 1.7e-188 663.7 767 47.2
Sed0018351 Sechium edule HOM05D007669 ORTHO05D009624 2.9e-188 662.9 753 48.1
Phvul.003G138500 Phaseolus vulgaris HOM05D007669 ORTHO05D009624 4.8e-183 645.6 783 47.0
Ca_21270_v3 Cicer arietinum L. HOM05D007669 ORTHO05D009624 1.1e-182 644.4 846 44.1
ClCG06G013870 Citrullus lanatus HOM05D007669 ORTHO05D009624 2.6e-181 639.8 757 47.0
PGR044G0001 Punica granatum HOM05D007669 ORTHO05D009624 8.5e-180 634.8 785 45.4
Medtr4g126780 Medicago truncatula HOM05D007669 ORTHO05D009624 1.5e-179 634.0 726 47.1
Rhsim01G0007900 Rhododendron simsii HOM05D007669 ORTHO05D009624 1.8e-177 627.1 829 43.9
Nn8g40420 Nelumbo nucifera HOM05D007669 ORTHO05D009624 2.5e-171 606.7 779 45.2
Lj2g0020468 Lotus japonicus HOM05D007669 ORTHO05D009624 4.2e-171 605.9 767 45.8
Cc06_g12900 Coffea canephora HOM05D007669 ORTHO05D009624 2.0e-168 597.0 779 43.5
Oeu025206.1 Olea europaea HOM05D007669 ORTHO05D009624 1.1e-166 591.3 704 44.7
Cpa.g.sc115.51 Carica papaya HOM05D007669 ORTHO05D009624 1.4e-161 574.3 713 45.0
HanXRQChr09g0244441 Helianthus annuus HOM05D007669 ORTHO05D009624 1.4e-161 574.3 763 43.4
CiPaw.08G030700 Carya illinoinensis HOM05D007669 ORTHO05D009624 7.0e-158 562.0 582 52.2
SalBow1G4073 Salvia bowleyana HOM05D007669 ORTHO05D009624 2.0e-157 560.5 766 41.5
Migut.K00227 Erythranthe guttata HOM05D007669 ORTHO05D009624 1.1e-155 554.7 779 41.2
PSO063G2993 Papaver somniferum HOM05D007669 ORTHO05D009624 9.5e-155 551.6 798 41.6
Ah.09g232160 Amaranthus hybridus HOM05D007669 ORTHO05D009624 2.1e-154 550.4 768 42.2
PSO170G1866 Papaver somniferum HOM05D007669 ORTHO05D009624 2.1e-154 550.4 775 42.2
Aqoxy7G02932 Aquilegia oxysepala HOM05D007669 ORTHO05D009624 4.7e-154 549.3 774 43.4
Lsat_1_v5_gn_7_54021 Lactuca sativa HOM05D007669 ORTHO05D009624 6.4e-151 538.9 718 43.6
SGA_v2.0_scaffold17G07944 Striga asiatica HOM05D007669 ORTHO05D009624 1.9e-150 537.3 776 40.6
VMungo1215G2771 Vigna mungo HOM05D007669 ORTHO05D009624 3.3e-147 526.6 944 36.5
AUR62031310 Chenopodium quinoa HOM05D007669 ORTHO05D009624 1.2e-146 524.6 766 39.8
EL10Ac8g19326 Beta vulgaris HOM05D007669 ORTHO05D009624 2.8e-146 523.5 772 40.3
Hund06703 Selenicereus undatus HOM05D007669 ORTHO05D009624 3.6e-146 523.1 827 38.9
MELO3C017409.2 Cucumis melo HOM05D007669 ORTHO05D009624 6.2e-146 522.3 723 42.6
Eucgr.D01099 Eucalyptus grandis HOM05D007669 ORTHO05D009624 2.9e-143 513.5 526 50.4
vmacro13101 Vaccinium macrocarpon HOM05D007669 ORTHO05D009624 2.7e-141 506.9 751 41.1
Sc13g0008100 Simmondsia chinensis HOM05D007669 ORTHO05D009624 3.5e-141 506.5 751 39.8
ATR0580G240 Amborella trichopoda HOM05D007669 ORTHO05D009624 1.2e-136 491.5 806 39.1
ECA240G0205 Erigeron canadensis HOM05D007669 ORTHO05D009624 1.2e-136 491.5 678 42.8
Psat4g013920 Pisum sativum HOM05D007669 ORTHO05D009624 4.4e-136 489.6 573 48.3
Glyma.17G056500 Glycine max HOM05D007669 ORTHO05D009624 1.3e-132 478.0 560 47.3
FAN12G2799 Fragaria x ananassa HOM05D007669 ORTHO05D009624 1.7e-119 434.5 255 83.1
Hma1.2p1_0726F.1_g208990 Hydrangea macrophylla HOM05D007669 ORTHO05D009624 6.4e-119 432.6 547 45.7
Zm00001eb432590 Zea mays HOM05D007669 ORTHO05D009624 2.3e-108 397.5 733 35.9
Eucgr.L01386 Eucalyptus grandis HOM05D007669 ORTHO05D009624 1.0e-103 382.1 405 49.9
HPP92_010780 Vanilla planifolia HOM05D007669 ORTHO05D009624 6.5e-103 379.4 508 43.5
CsaV3_1G032070 Cucumis sativus L. HOM05D007669 ORTHO05D009624 3.9e-100 370.2 395 49.4
Eucgr.D01111 Eucalyptus grandis HOM05D007669 ORTHO05D009624 3.3e-99 367.1 771 34.8
MBI16_g09333_MAGBIO Magnolia biondii HOM05D007669 ORTHO05D009624 1.4e-97 361.7 509 43.0
Glyma.13G102601 Glycine max HOM05D007669 ORTHO05D009624 2.0e-96 357.8 455 44.4
AUR62027394 Chenopodium quinoa HOM05D007669 ORTHO05D009624 5.5e-94 349.7 451 42.6
DCAR_017992 Daucus carota HOM05D007669 ORTHO05D009624 1.4e-86 325.1 500 38.0
SEGI_13081 Sequoiadendron giganteum HOM05D007669 ORTHO05D009624 3.9e-84 317.0 598 34.1
CDE02G1706 Ceratophyllum demersum HOM05D007669 ORTHO05D009624 7.9e-77 292.7 457 39.8
AagrBONN_evm.TU.Sc2ySwM_117.3295 Anthoceros agrestis HOM05D007669 ORTHO05D009624 7.0e-73 279.6 775 29.2
Pp3c9_5530 Physcomitrium patens HOM05D007669 ORTHO05D009624 2.2e-66 258.1 798 27.4
SEGI_05703 Sequoiadendron giganteum HOM05D007669 ORTHO05D009624 9.8e-59 232.6 526 31.4
Haze_22064 Corylus avellana HOM05D007669 ORTHO05D009624 1.2e-56 225.7 199 56.3
SMO356G0293 Selaginella moellendorffii HOM05D007669 ORTHO05D009624 2.2e-55 221.5 567 31.4
Mapoly0147s0035 Marchantia polymorpha HOM05D007669 ORTHO05D009624 1.0e-52 212.6 593 28.5
COL.COLO4_25058 Corchorus olitorius HOM05D007669 ORTHO05D009624 8.9e-44 183.0 166 52.4
Eucgr.D01101 Eucalyptus grandis HOM05D007669 ORTHO05D009624 1.7e-42 178.7 201 48.3
Psat7g062600 Pisum sativum HOM05D007669 ORTHO05D009624 7.0e-41 173.3 134 62.7
DCAR_017991 Daucus carota HOM05D007669 ORTHO05D009624 1.2e-32 146.0 199 38.2
Glyma.13G102550 Glycine max HOM05D007669 ORTHO05D009624 3.1e-28 131.3 271 36.2
Psat4g139360 Pisum sativum HOM05D007669 ORTHO05D009624 2.3e-15 88.6 87 50.6
Haze_22063 Corylus avellana HOM05D007669 ORTHO05D009624 3.0e-15 88.2 174 39.1
PRCOL_00001814 Prasinoderma coloniale HOM05D007669 ORTHO05D009624 1.9e-14 85.5 144 38.2
Cre07.g356600 Chlamydomonas reinhardtii HOM05D007669 ORTHO05D009624 4.7e-13 80.9 108 39.8
COL.COLO4_25059 Corchorus olitorius HOM05D007669 ORTHO05D009624 1.4e-12 79.3 155 38.1
CiPaw.08G030600 Carya illinoinensis HOM05D007669 ORTHO05D009624 5.2e-12 77.4 75 48.0
Pp3c25_1540 Physcomitrium patens HOM05D024043 ORTHO05D031244 5.2e-12 77.4 151 35.8
PRCOL_00006584 Prasinoderma coloniale HOM05D024043 ORTHO05D009624 1.2e-11 76.3 128 35.9
MCO10G383 Micromonas commoda HOM05D024043 ORTHO05D009624 7.6e-11 73.6 134 36.6
Lj3A156T43 Lonicera japonica HOM05D007669 ORTHO05D009624 1.7e-10 72.4 166 36.1
Mapoly0004s0046 Marchantia polymorpha HOM05D024043 ORTHO05D031244 2.2e-10 72.0 111 38.7
AagrBONN_evm.TU.Sc2ySwM_369.230 Anthoceros agrestis HOM05D024043 ORTHO05D031244 5.4e-09 67.4 110 33.6
Os04g0659150 Oryza sativa ssp. japonica HOM05D007669 ORTHO05D009624 1.3e-07 62.8 154 31.2
SEGI_25409 Sequoiadendron giganteum HOM05D007669 ORTHO05D009624 1.7e-07 62.4 219 27.4


User provided reference genes

Program Settings