Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0398391 Rosa chinensis HOM05D006584 ORTHO05D007640 7.6e-163 577.0 275 100.0
RcHm_v2.0_Chr6g0310741 Rosa chinensis HOM05D006584 ORTHO05D007640 3.8e-45 186.0 294 43.2
FAN20G0896 Fragaria x ananassa HOM05D006584 ORTHO05D007640 4.9e-45 185.7 294 42.9
FvH4_2g32010 Fragaria vesca HOM05D006584 ORTHO05D007640 2.7e-43 179.9 293 43.0
FAN15G2290 Fragaria x ananassa HOM05D001585 ORTHO05D001677 6.9e-39 165.2 305 39.0
Prupe.1G413100 Prunus persica HOM05D006584 ORTHO05D007640 5.0e-37 159.1 288 40.3
Hma1.2p1_0482F.1_g162540 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 6.5e-37 158.7 303 38.3
QL02p001321 Quercus lobata HOM05D006584 ORTHO05D007640 1.9e-36 157.1 294 38.4
MD08G1043300 Malus domestica HOM05D006584 ORTHO05D007640 2.5e-36 156.8 298 39.3
GSVIVG01035364001 Vitis vinifera HOM05D006584 ORTHO05D007640 4.2e-36 156.0 303 37.0
Atru.chr7.1052 Acer truncatum HOM05D006584 ORTHO05D007640 7.2e-36 155.2 293 37.9
CiPaw.15G039500 Carya illinoinensis HOM05D006584 ORTHO05D007640 3.5e-35 152.9 298 38.3
Manes.03G047600 Manihot esculenta HOM05D006584 ORTHO05D007640 3.5e-35 152.9 294 38.4
Cfa017949 Carpinus fangiana HOM05D006584 ORTHO05D007640 6.1e-35 152.1 298 37.6
CANSAT25G1083 Cannabis sativa HOM05D006584 ORTHO05D007640 3.0e-34 149.8 306 37.6
AUR62009158 Chenopodium quinoa HOM05D006584 ORTHO05D007640 3.0e-34 149.8 292 37.7
Potri.006G230300 Populus trichocarpa HOM05D006584 ORTHO05D007640 3.0e-34 149.8 291 37.1
Rhsim11G0044500 Rhododendron simsii HOM05D006584 ORTHO05D007640 3.0e-34 149.8 301 36.5
Ciclev10008784m.g Citrus clementina HOM05D006584 ORTHO05D007640 3.9e-34 149.4 293 36.9
Dinv27980 Davidia involucrata HOM05D006584 ORTHO05D007640 8.7e-34 148.3 297 37.0
Phvul.001G034500 Phaseolus vulgaris HOM05D006584 ORTHO05D007640 8.7e-34 148.3 300 36.7
Sabra06G0178400 Salix brachista HOM05D006584 ORTHO05D007640 1.5e-33 147.5 298 36.6
Glyma.17G229600 Glycine max HOM05D006584 ORTHO05D007640 2.5e-33 146.7 300 36.0
CSS0009868 Camellia sinensis var. sinensis HOM05D006584 ORTHO05D007640 3.3e-33 146.4 296 36.8
CSS0020610 Camellia sinensis var. sinensis HOM05D006584 ORTHO05D007640 3.3e-33 146.4 296 36.8
AUR62009159 Chenopodium quinoa HOM05D006584 ORTHO05D007640 4.3e-33 146.0 270 39.6
DCAR_004431 Daucus carota HOM05D006584 ORTHO05D007640 5.7e-33 145.6 294 35.0
Lj5g0009338 Lotus japonicus HOM05D006584 ORTHO05D007640 7.4e-33 145.2 298 36.6
vmacro00145 Vaccinium macrocarpon HOM05D006584 ORTHO05D007640 7.4e-33 145.2 293 35.8
Actinidia01191 Actinidia chinensis HOM05D006584 ORTHO05D007640 9.7e-33 144.8 296 36.1
arahy.Tifrunner.gnm1.ann1.3J87F1 Arachis hypogaea HOM05D006584 ORTHO05D007640 1.6e-32 144.1 298 36.6
arahy.Tifrunner.gnm1.ann1.U8SEXI Arachis hypogaea HOM05D006584 ORTHO05D007640 4.8e-32 142.5 298 36.6
Cc08_g10530 Coffea canephora HOM05D006584 ORTHO05D007640 4.8e-32 142.5 299 36.1
Nitab4.5_0004456g0010 Nicotiana tabacum HOM05D006584 ORTHO05D007640 4.8e-32 142.5 266 38.7
EL10Ac2g03896 Beta vulgaris HOM05D006584 ORTHO05D007640 1.1e-31 141.4 266 36.8
VMungo0647G2476 Vigna mungo HOM05D006584 ORTHO05D007640 1.4e-31 141.0 296 35.8
Lsat_1_v5_gn_3_24361 Lactuca sativa HOM05D006584 ORTHO05D007640 4.1e-31 139.4 300 34.3
HanXRQChr17g0538441 Helianthus annuus HOM05D006584 ORTHO05D007640 5.3e-31 139.0 294 35.0
CsaV3_4G035570 Cucumis sativus L. HOM05D006584 ORTHO05D007640 6.9e-31 138.7 300 35.7
PGSC0003DMG400029944 Solanum tuberosum HOM05D006584 ORTHO05D007640 1.2e-30 137.9 301 34.9
PGR031G2613 Punica granatum HOM05D006584 ORTHO05D007640 1.5e-30 137.5 312 34.3
Lalb_Chr14g0367721 Lupinus albus HOM05D006584 ORTHO05D007640 2.0e-30 137.1 291 35.7
Nitab4.5_0001584g0100 Nicotiana tabacum HOM05D006584 ORTHO05D007640 2.0e-30 137.1 298 34.6
Peaxi162Scf00477g00010 Petunia axillaris HOM05D006584 ORTHO05D007640 2.6e-30 136.7 298 35.2
Aqoxy7G01236 Aquilegia oxysepala HOM05D006584 ORTHO05D007640 4.5e-30 136.0 298 34.6
Ca_13172_v3 Cicer arietinum L. HOM05D006584 ORTHO05D007640 5.9e-30 135.6 294 35.7
Ca_14355_v3 Cicer arietinum L. HOM05D000495 ORTHO05D007640 5.9e-30 135.6 294 35.7
Hund19462 Selenicereus undatus HOM05D006584 ORTHO05D007640 5.9e-30 135.6 298 33.9
Solyc08g065350.4 Solanum lycopersicum HOM05D006584 ORTHO05D007640 5.9e-30 135.6 298 34.2
Sopen08g018910 Solanum pennellii HOM05D006584 ORTHO05D007640 5.9e-30 135.6 292 34.9
SGA_v2.0_scaffold88G27225 Striga asiatica HOM05D006584 ORTHO05D007640 7.7e-30 135.2 317 33.8
CARHR187290 Cardamine hirsuta HOM05D006584 ORTHO05D007640 1.3e-29 134.4 293 35.5
Medtr1g016440 Medicago truncatula HOM05D006584 ORTHO05D007640 1.3e-29 134.4 290 35.2
MSTRG.11661 Avicennia marina HOM05D006584 ORTHO05D007640 2.2e-29 133.7 298 34.6
CAN.G181.69 Capsicum annuum HOM05D006584 ORTHO05D007640 3.8e-29 132.9 298 33.9
ClCG05G017800 Citrullus lanatus HOM05D006584 ORTHO05D007640 3.8e-29 132.9 295 35.3
Gohir.D13G193900 Gossypium hirsutum HOM05D006584 ORTHO05D007640 3.8e-29 132.9 318 34.0
Gorai.013G220000 Gossypium raimondii HOM05D006584 ORTHO05D007640 3.8e-29 132.9 318 33.6
Sed0000821 Sechium edule HOM05D006584 ORTHO05D007640 3.8e-29 132.9 298 34.2
Migut.A00139 Erythranthe guttata HOM05D006584 ORTHO05D007640 5.0e-29 132.5 288 35.1
TPR.G13096 Trifolium pratense HOM05D006584 ORTHO05D007640 1.1e-28 131.3 290 34.8
AT5G26040 Arabidopsis thaliana HOM05D006584 ORTHO05D007640 1.9e-28 130.6 291 34.4
PSO832G1739 Papaver somniferum HOM05D006584 ORTHO05D007640 2.5e-28 130.2 293 34.5
SalBow4G2021 Salvia bowleyana HOM05D006584 ORTHO05D007640 2.5e-28 130.2 310 34.2
AL6G38030 Arabidopsis lyrata HOM05D006584 ORTHO05D007640 4.2e-28 129.4 291 34.0
Eucgr.C00641 Eucalyptus grandis HOM05D006584 ORTHO05D007640 4.2e-28 129.4 290 35.2
Os06g0571100 Oryza sativa ssp. japonica HOM05D006584 ORTHO05D007640 4.2e-28 129.4 289 34.6
Aa31LG11G5020 Aethionema arabicum HOM05D006584 ORTHO05D007640 5.5e-28 129.0 291 34.7
Carub.0006s2380 Capsella rubella HOM05D006584 ORTHO05D007640 5.5e-28 129.0 291 33.7
Gohir.A13G187100 Gossypium hirsutum HOM05D006584 ORTHO05D007640 5.5e-28 129.0 338 32.5
Psat6g020800 Pisum sativum HOM05D006584 ORTHO05D007640 7.2e-28 128.6 287 35.2
A06p36540 Brassica napus HOM05D006584 ORTHO05D007640 1.2e-27 127.9 295 33.9
BolC7t44725H Brassica oleracea HOM05D006584 ORTHO05D007640 1.2e-27 127.9 291 34.0
BraA06t26580Z Brassica rapa HOM05D006584 ORTHO05D007640 1.2e-27 127.9 295 33.9
THA.LOC104811245 Tarenaya hassleriana HOM05D006584 ORTHO05D007640 1.2e-27 127.9 305 33.8
Thecc.09G053100 Theobroma cacao HOM05D006584 ORTHO05D007640 1.6e-27 127.5 291 34.0
C07p41940 Brassica napus HOM05D006584 ORTHO05D007640 2.7e-27 126.7 291 33.7
Duzib150G0622 Durio zibethinus HOM05D006584 ORTHO05D007640 2.7e-27 126.7 293 34.5
PSO782G5661 Papaver somniferum HOM05D006584 ORTHO05D007640 2.7e-27 126.7 298 31.5
CDE05G0889 Ceratophyllum demersum HOM05D006584 ORTHO05D007640 3.6e-27 126.3 297 33.7
Sp2g21680 Schrenkiella parvula HOM05D006584 ORTHO05D007640 4.6e-27 125.9 291 34.7
COL.COLO4_21049 Corchorus olitorius HOM05D006584 ORTHO05D007640 6.1e-27 125.6 293 34.5
PSO063G1048 Papaver somniferum HOM05D006584 ORTHO05D007640 1.4e-26 124.4 293 33.8
unitig_748.g7524 Utricularia gibba HOM05D006584 ORTHO05D007640 3.9e-26 122.9 279 34.1
Duzib168G0725 Durio zibethinus HOM05D006584 ORTHO05D007640 8.8e-26 121.7 277 33.2
Thhalv10004371m.g Eutrema salsugineum HOM05D006584 ORTHO05D007640 5.7e-25 119.0 313 31.9
MBI01_g09962_MAGBIO Magnolia biondii HOM05D006584 ORTHO05D007640 6.3e-24 115.5 165 42.4
MELO3C016865.2 Cucumis melo HOM05D006584 ORTHO05D007640 2.4e-23 113.6 285 33.3
SMO228G0123 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 2.4e-23 113.6 290 31.7
Sc23g0004490 Simmondsia chinensis HOM05D006584 ORTHO05D007640 5.3e-23 112.5 191 37.7
Haze_18198 Corylus avellana HOM05D006584 ORTHO05D007640 2.0e-22 110.5 298 33.6
RcHm_v2.0_Chr6g0269981 Rosa chinensis HOM05D006584 ORTHO05D007640 4.5e-22 109.4 52 94.2
Mapoly0007s0200 Marchantia polymorpha HOM05D006584 ORTHO05D007640 1.1e-20 104.8 298 29.5
Pp3c16_3940 Physcomitrium patens HOM05D006584 ORTHO05D007640 1.2e-19 101.3 297 29.6
Pp3c6_24640 Physcomitrium patens HOM05D006584 ORTHO05D007640 3.0e-18 96.7 304 28.0
FAN27G2179 Fragaria x ananassa HOM05D006584 ORTHO05D007640 3.3e-17 93.2 290 31.7
Lj8A547G7 Lonicera japonica HOM05D006584 ORTHO05D007640 3.3e-17 93.2 288 30.6
CBR_g50289 Chara braunii HOM05D006584 ORTHO05D007640 2.8e-16 90.1 186 33.9
Hma1.2p1_0482F.1_g162550 Hydrangea macrophylla HOM05D006584 ORTHO05D007640 8.2e-16 88.6 134 43.3
Cpa.g.sc7.166 Carica papaya HOM05D006584 ORTHO05D007640 1.4e-15 87.8 130 43.1
ATR0716G011 Amborella trichopoda HOM05D006584 ORTHO05D007640 2.4e-15 87.0 90 48.9
Zm00001eb385130 Zea mays HOM05D006584 ORTHO05D007640 4.1e-15 86.3 90 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1186 Anthoceros agrestis HOM05D006584 ORTHO05D007640 5.9e-14 82.4 301 27.2
RcHm_v2.0_Chr5g0028711 Rosa chinensis HOM05D006584 ORTHO05D007640 1.0e-13 81.6 139 41.0
HPP92_026784 Vanilla planifolia HOM05D006584 ORTHO05D007640 1.3e-13 81.3 230 32.2
RcHm_v2.0_Chr5g0034671 Rosa chinensis HOM05D006584 ORTHO05D007640 2.2e-13 80.5 39 92.3
AUR62022066 Chenopodium quinoa HOM05D006584 ORTHO05D007640 2.9e-13 80.1 236 34.3
RcHm_v2.0_Chr2g0140831 Rosa chinensis HOM05D006584 ORTHO05D348852 6.5e-13 79.0 47 85.1
Oeu029409.1 Olea europaea HOM05D006584 ORTHO05D007640 8.5e-13 78.6 89 48.3
AUR62022067 Chenopodium quinoa HOM05D006584 ORTHO05D007640 1.1e-12 78.2 234 31.6
SEGI_11187 Sequoiadendron giganteum HOM05D006584 ORTHO05D007640 1.1e-09 68.2 154 31.8
RcHm_v2.0_Chr5g0034681 Rosa chinensis HOM05D006584 ORTHO05D007640 3.3e-09 66.6 32 87.5
Lj8A542T15 Lonicera japonica HOM05D006584 ORTHO05D007640 4.5e-06 56.2 83 36.1


User provided reference genes

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