Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 6.4e-85 317.4 161 100.0
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.8e-32 142.5 93 84.9
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.5e-30 136.7 95 78.9
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 2.9e-29 132.5 89 82.0
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.9e-29 132.5 89 82.0
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.9e-29 132.5 89 82.0
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 2.9e-29 132.5 89 82.0
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 6.5e-29 131.3 89 80.9
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 4.6e-27 125.2 92 75.0
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 1.8e-26 123.2 89 79.8
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 7.4e-25 117.9 78 80.8
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 2.0e-22 109.8 88 70.5
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 3.4e-22 109.0 89 66.3
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 4.5e-22 108.6 95 64.2
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 5.9e-22 108.2 95 64.2
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 1.3e-21 107.1 89 65.2
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 1.3e-21 107.1 95 63.2
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.3e-21 107.1 89 64.0
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.3e-21 107.1 95 64.2
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.7e-21 106.7 92 60.9
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 5.0e-21 105.1 89 61.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 1.4e-20 103.6 89 65.2
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 3.2e-20 102.4 92 60.9
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 3.2e-20 102.4 89 62.9
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 3.2e-20 102.4 89 61.8
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 5.5e-20 101.7 85 67.1
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 5.5e-20 101.7 90 64.4
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 7.2e-20 101.3 85 67.1
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 9.4e-20 100.9 90 63.3
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 1.6e-19 100.1 85 67.1
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 2.7e-19 99.4 87 63.2
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 2.7e-19 99.4 86 62.8
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 3.6e-19 99.0 89 68.5
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 7.9e-19 97.8 93 61.3
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 1.4e-18 97.1 92 57.6
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.8e-18 96.7 91 58.2
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.8e-18 96.7 91 58.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 1.8e-18 96.7 91 58.2
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 1.8e-18 96.7 91 58.2
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 1.8e-18 96.7 91 58.2
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 2.3e-18 96.3 89 62.9
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.3e-18 96.3 89 58.4
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 3.0e-18 95.9 94 56.4
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 3.0e-18 95.9 94 60.6
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.0e-18 95.9 96 63.5
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 3.9e-18 95.5 91 61.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 3.9e-18 95.5 91 57.1
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 5.1e-18 95.1 94 55.3
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.1e-18 95.1 90 61.1
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.1e-18 95.1 90 61.1
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 5.1e-18 95.1 90 61.1
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 5.1e-18 95.1 101 57.4
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 5.1e-18 95.1 98 60.2
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 6.7e-18 94.7 86 59.3
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 6.7e-18 94.7 101 56.4
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 6.7e-18 94.7 94 55.3
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 8.8e-18 94.4 94 55.3
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 1.1e-17 94.0 89 61.8
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 1.5e-17 93.6 95 56.8
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 2.0e-17 93.2 98 57.1
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 2.6e-17 92.8 90 60.0
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 4.4e-17 92.0 94 55.3
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 4.4e-17 92.0 86 60.5
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 5.7e-17 91.7 99 53.5
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 5.7e-17 91.7 86 64.0
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 1.7e-16 90.1 90 60.0
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.8e-16 88.6 104 50.0
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 6.3e-16 88.2 91 58.2
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 1.1e-15 87.4 91 57.1
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 1.4e-15 87.0 99 54.5
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 1.8e-15 86.7 113 48.7
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 2.4e-15 86.3 90 54.4
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 2.4e-15 86.3 100 55.0
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 3.1e-15 85.9 96 52.1
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 6.9e-15 84.7 93 57.0
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.1e-15 84.3 96 51.0
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.2e-14 84.0 96 52.1
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 1.2e-14 84.0 77 63.6
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 2.6e-14 82.8 90 57.8
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 3.4e-14 82.4 100 52.0
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 7.7e-14 81.3 67 68.7
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 1.0e-13 80.9 90 56.7
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 2.9e-13 79.3 83 56.6
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 2.9e-13 79.3 94 54.3
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.1e-12 77.4 88 50.0
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 1.1e-12 77.4 98 51.0
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 1.9e-12 76.6 90 57.8
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.5e-12 76.3 90 60.0
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 7.2e-12 74.7 87 56.3
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 9.4e-12 74.3 92 53.3
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 9.4e-12 74.3 90 45.6
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 9.4e-12 74.3 90 45.6
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 3.6e-11 72.4 67 56.7
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 4.7e-11 72.0 90 54.4
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.4e-10 70.5 92 52.2
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 1.4e-10 70.5 88 50.0
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 1.4e-10 70.5 61 65.6
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.0e-10 69.3 75 49.3
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 3.0e-10 69.3 75 49.3
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 6.7e-10 68.2 66 60.6
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 1.1e-09 67.4 60 63.3
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 4.4e-09 65.5 58 69.0
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.7e-09 65.1 85 51.8
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 5.7e-09 65.1 81 55.6
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 1.7e-08 63.5 78 51.3
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-08 63.5 77 45.5
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 1.7e-08 63.5 83 56.6
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 6.3e-08 61.6 59 59.3
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.1e-07 60.8 53 62.3
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 1.4e-07 60.5 57 52.6
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 7.0e-07 58.2 44 77.3
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 2.0e-06 56.6 56 53.6
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 2.0e-06 56.6 91 45.1
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 7.7e-06 54.7 47 66.0


User provided reference genes

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