Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0398171 Rosa chinensis HOM05D006392 ORTHO05D008010 3.9e-87 324.7 159 100.0
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 1.5e-57 226.5 113 96.5
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 6.3e-53 211.1 109 92.7
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 4.1e-52 208.4 109 90.8
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 7.0e-52 207.6 109 90.8
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 2.0e-51 206.1 113 87.6
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 9.5e-41 170.6 112 73.2
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 2.2e-37 159.5 111 72.1
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 2.4e-36 156.0 111 69.4
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 9.2e-36 154.1 129 57.4
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 9.5e-33 144.1 114 62.3
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 1.2e-32 143.7 132 54.5
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 1.2e-32 143.7 115 60.9
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 2.1e-32 142.9 109 66.1
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 2.1e-32 142.9 110 62.7
Actinidia16990 Actinidia chinensis HOM05D006392 ORTHO05D004187 2.8e-32 142.5 134 51.5
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 3.6e-32 142.1 128 55.5
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 3.6e-32 142.1 128 55.5
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 3.6e-32 142.1 127 52.8
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 3.6e-32 142.1 116 58.6
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 3.6e-32 142.1 110 62.7
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 4.7e-32 141.7 113 60.2
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 8.1e-32 141.0 112 59.8
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 1.1e-31 140.6 110 58.2
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 1.1e-31 140.6 110 58.2
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 1.1e-31 140.6 115 57.4
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 1.8e-31 139.8 120 55.0
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 1.8e-31 139.8 112 60.7
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.3e-31 139.4 134 52.2
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 3.1e-31 139.0 113 59.3
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 3.1e-31 139.0 110 60.9
Hma1.2p1_0638F.1_g193910 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 3.1e-31 139.0 110 60.9
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 3.1e-31 139.0 127 56.7
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 5.2e-31 138.3 109 60.6
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 6.8e-31 137.9 110 60.9
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 8.9e-31 137.5 110 56.4
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 8.9e-31 137.5 115 57.4
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 1.2e-30 137.1 112 58.0
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 1.2e-30 137.1 110 60.0
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 2.0e-30 136.3 110 58.2
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 2.0e-30 136.3 108 59.3
Ah.11g039750 Amaranthus hybridus HOM05D006392 ORTHO05D008010 3.4e-30 135.6 108 59.3
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 3.4e-30 135.6 127 51.2
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 4.4e-30 135.2 114 57.9
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 5.8e-30 134.8 108 59.3
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 7.6e-30 134.4 110 58.2
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 9.9e-30 134.0 110 59.1
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 9.9e-30 134.0 110 59.1
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 9.9e-30 134.0 110 58.2
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 1.3e-29 133.7 107 61.7
vmacro07583 Vaccinium macrocarpon HOM05D006392 ORTHO05D008010 1.3e-29 133.7 132 53.0
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 1.7e-29 133.3 109 56.9
Nn1g05904 Nelumbo nucifera HOM05D006392 ORTHO05D008010 2.9e-29 132.5 110 57.3
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 2.9e-29 132.5 107 60.7
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 4.9e-29 131.7 112 59.8
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 4.9e-29 131.7 108 56.5
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 4.9e-29 131.7 109 56.0
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 6.4e-29 131.3 107 57.0
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 6.4e-29 131.3 108 59.3
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 8.4e-29 131.0 109 56.9
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.1e-28 130.6 112 54.5
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.1e-28 130.6 112 54.5
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 1.1e-28 130.6 112 54.5
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 1.4e-28 130.2 115 54.8
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 1.4e-28 130.2 107 59.8
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.4e-28 130.2 107 57.0
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 1.4e-28 130.2 108 57.4
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 2.4e-28 129.4 112 52.7
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 2.4e-28 129.4 108 53.7
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 2.4e-28 129.4 109 56.9
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 3.2e-28 129.0 107 55.1
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 3.2e-28 129.0 111 55.9
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 3.2e-28 129.0 115 54.8
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 3.2e-28 129.0 115 54.8
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 3.2e-28 129.0 110 54.5
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 4.1e-28 128.6 110 56.4
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 5.4e-28 128.3 110 56.4
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 7.1e-28 127.9 110 54.5
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 9.2e-28 127.5 110 54.5
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 1.2e-27 127.1 116 56.9
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 1.6e-27 126.7 110 54.5
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 2.1e-27 126.3 108 55.6
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 4.6e-27 125.2 110 53.6
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 4.6e-27 125.2 110 53.6
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 4.6e-27 125.2 112 53.6
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 4.6e-27 125.2 117 53.8
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 6.0e-27 124.8 147 42.2
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 7.8e-27 124.4 110 53.6
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 1.0e-26 124.0 114 51.8
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 2.3e-26 122.9 113 54.0
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 3.0e-26 122.5 115 52.2
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 3.9e-26 122.1 111 50.5
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 1.9e-25 119.8 111 53.2
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 1.9e-25 119.8 111 53.2
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 2.5e-25 119.4 112 50.0
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 4.3e-25 118.6 113 50.4
Cc10_g01620 Coffea canephora HOM05D006392 ORTHO05D008010 5.6e-25 118.2 114 49.1
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 9.6e-25 117.5 112 51.8
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 1.6e-24 116.7 109 49.5
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 1.8e-23 113.2 107 50.5
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 1.5e-22 110.2 120 47.5
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 3.4e-22 109.0 107 48.6
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 3.4e-22 109.0 109 51.4
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 3.2e-20 102.4 92 54.3
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 2.1e-19 99.8 107 46.7
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 7.8e-19 97.8 107 46.7
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 1.0e-18 97.4 106 49.1
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 2.3e-18 96.3 106 44.3
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 1.1e-17 94.0 112 41.1
TPR.G29580 Trifolium pratense HOM05D006392 ORTHO05D008010 3.3e-17 92.4 78 53.8
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 4.8e-16 88.6 113 38.9
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 2.4e-15 86.3 129 34.1
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 9.0e-15 84.3 112 39.3
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 4.2e-12 75.5 53 69.8
Actinidia27159 Actinidia chinensis HOM05D006392 ORTHO05D008010 2.4e-07 59.7 109 34.9


User provided reference genes

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