Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0398161 Rosa chinensis HOM05D006392 ORTHO05D008010 1.7e-73 279.3 142 100.0
RcHm_v2.0_Chr6g0302911 Rosa chinensis HOM05D006392 ORTHO05D008010 4.2e-40 168.3 86 98.8
FvH4_2g38390 Fragaria vesca HOM05D006392 ORTHO05D008010 4.7e-39 164.9 95 88.4
Prupe.1G364700 Prunus persica HOM05D006392 ORTHO05D008010 3.5e-34 148.7 93 81.7
Lalb_Chr20g0119891 Lupinus albus HOM05D006392 ORTHO05D008010 1.0e-33 147.1 86 84.9
MD15G1011700 Malus domestica HOM05D006392 ORTHO05D008010 1.0e-33 147.1 98 75.5
MD08G1012700 Malus domestica HOM05D006392 ORTHO05D008010 1.7e-33 146.4 86 83.7
MD11G1014100 Malus domestica HOM05D006392 ORTHO05D008010 3.8e-33 145.2 98 74.5
TPR.G17497 Trifolium pratense HOM05D006392 ORTHO05D008010 5.0e-33 144.8 93 81.7
Haze_22639 Corylus avellana HOM05D006392 ORTHO05D008010 6.5e-33 144.4 86 83.7
Cfa013957 Carpinus fangiana HOM05D006392 ORTHO05D008010 1.5e-32 143.3 86 82.6
CiPaw.07G149200 Carya illinoinensis HOM05D006392 ORTHO05D008010 1.9e-32 142.9 101 75.2
QL02p011683 Quercus lobata HOM05D006392 ORTHO05D008010 1.9e-32 142.9 86 81.4
Ca_00791_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 2.5e-32 142.5 93 80.6
Ca_07152_v3 Cicer arietinum L. HOM05D006392 ORTHO05D008010 2.5e-32 142.5 93 80.6
Cpa.g.sc26.51 Carica papaya HOM05D006392 ORTHO05D008010 1.6e-31 139.8 86 80.2
Psat1g169520 Pisum sativum HOM05D006392 ORTHO05D008010 1.6e-31 139.8 92 80.4
Thecc.08G045200 Theobroma cacao HOM05D006392 ORTHO05D008010 1.6e-31 139.8 86 80.2
Medtr2g029040 Medicago truncatula HOM05D006392 ORTHO05D008010 2.1e-31 139.4 86 81.4
Glyma.15G275100 Glycine max HOM05D006392 ORTHO05D008010 3.6e-31 138.7 93 79.6
TWI56G0581 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 3.6e-31 138.7 86 79.1
Duzib093G0848 Durio zibethinus HOM05D006392 ORTHO05D008010 6.1e-31 137.9 86 77.9
Phvul.005G022200 Phaseolus vulgaris HOM05D006392 ORTHO05D008010 8.0e-31 137.5 93 76.3
GSVIVG01009916001 Vitis vinifera HOM05D006392 ORTHO05D008010 1.0e-30 137.1 93 75.3
Eucgr.F01664 Eucalyptus grandis HOM05D006392 ORTHO05D008010 1.4e-30 136.7 103 69.9
TWI36G0533 Tripterygium wilfordii HOM05D006392 ORTHO05D008010 1.8e-30 136.3 85 78.8
VMungo1080G0965 Vigna mungo HOM05D006392 ORTHO05D008010 1.8e-30 136.3 93 75.3
Gohir.D01G097700 Gossypium hirsutum HOM05D006392 ORTHO05D008010 2.3e-30 136.0 86 77.9
Lj6g0002207 Lotus japonicus HOM05D006392 ORTHO05D008010 2.3e-30 136.0 93 76.3
CsaV3_3G045910 Cucumis sativus L. HOM05D006392 ORTHO05D008010 5.2e-30 134.8 93 75.3
Duzib116G0836 Durio zibethinus HOM05D006392 ORTHO05D008010 5.2e-30 134.8 86 76.7
Glyma.09G103100 Glycine max HOM05D006392 ORTHO05D008010 5.2e-30 134.8 93 77.4
Hma1.2p1_0638F.1_g193900 Hydrangea macrophylla HOM05D006392 ORTHO05D008010 5.2e-30 134.8 86 75.6
Gohir.A01G111000 Gossypium hirsutum HOM05D006392 ORTHO05D008010 6.7e-30 134.4 86 76.7
Sed0018359 Sechium edule HOM05D006392 ORTHO05D008010 6.7e-30 134.4 93 75.3
Sc02g0008600 Simmondsia chinensis HOM05D006392 ORTHO05D008010 6.7e-30 134.4 90 75.6
arahy.Tifrunner.gnm1.ann1.8AJY4P Arachis hypogaea HOM05D006392 ORTHO05D008010 8.8e-30 134.0 103 70.9
arahy.Tifrunner.gnm1.ann1.GAE5DS Arachis hypogaea HOM05D006392 ORTHO05D008010 8.8e-30 134.0 103 70.9
Gorai.002G123300 Gossypium raimondii HOM05D006392 ORTHO05D008010 1.2e-29 133.7 86 76.7
HanXRQChr13g0387101 Helianthus annuus HOM05D006392 ORTHO05D008010 1.2e-29 133.7 86 74.4
THA.LOC104809190 Tarenaya hassleriana HOM05D006392 ORTHO05D008010 1.5e-29 133.3 86 77.9
TAR628G0005 Trochodendron aralioides HOM05D006392 ORTHO05D008010 3.3e-29 132.1 93 74.2
CANSAT25G2040 Cannabis sativa HOM05D006392 ORTHO05D008010 4.4e-29 131.7 103 68.0
EL10Ac1g02188 Beta vulgaris HOM05D006392 ORTHO05D008010 5.7e-29 131.3 86 74.4
ECA233G3412 Erigeron canadensis HOM05D006392 ORTHO05D008010 7.5e-29 131.0 95 66.3
AUR62033899 Chenopodium quinoa HOM05D006392 ORTHO05D008010 1.3e-28 130.2 86 73.3
Lsat_1_v5_gn_8_30701 Lactuca sativa HOM05D006392 ORTHO05D008010 1.7e-28 129.8 86 69.8
Rhsim06G0021200 Rhododendron simsii HOM05D006392 ORTHO05D008010 2.2e-28 129.4 95 67.4
SalBow7G2189 Salvia bowleyana HOM05D006392 ORTHO05D008010 2.2e-28 129.4 92 66.3
AUR62041903 Chenopodium quinoa HOM05D006392 ORTHO05D008010 2.8e-28 129.0 86 72.1
Cc10_g01630 Coffea canephora HOM05D006392 ORTHO05D008010 4.8e-28 128.3 86 69.8
Oeu014179.1 Olea europaea HOM05D006392 ORTHO05D008010 4.8e-28 128.3 95 66.3
Aa31LG9G12590 Aethionema arabicum HOM05D006392 ORTHO05D008010 6.3e-28 127.9 95 67.4
ATR0810G120 Amborella trichopoda HOM05D006392 ORTHO05D008010 6.3e-28 127.9 86 69.8
CSS0006206 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 6.3e-28 127.9 86 70.9
CSS0012189 Camellia sinensis var. sinensis HOM05D006392 ORTHO05D008010 6.3e-28 127.9 86 70.9
Lj4C23T1 Lonicera japonica HOM05D006392 ORTHO05D008010 1.1e-27 127.1 86 70.9
AT5G42470 Arabidopsis thaliana HOM05D006392 ORTHO05D008010 1.8e-27 126.3 95 66.3
MSTRG.1188 Avicennia marina HOM05D006392 ORTHO05D008010 1.8e-27 126.3 86 69.8
Carub.0008s0658 Capsella rubella HOM05D006392 ORTHO05D008010 1.8e-27 126.3 97 66.0
FAN27G1073 Fragaria x ananassa HOM05D006392 ORTHO05D008010 3.1e-27 125.6 68 91.2
Actinidia21265 Actinidia chinensis HOM05D006392 ORTHO05D008010 4.1e-27 125.2 97 63.9
FAN15G0959 Fragaria x ananassa HOM05D006392 ORTHO05D008010 4.1e-27 125.2 64 93.8
FAN20G2474 Fragaria x ananassa HOM05D006392 ORTHO05D008010 4.1e-27 125.2 64 93.8
PSO541G2958 Papaver somniferum HOM05D006392 ORTHO05D008010 4.1e-27 125.2 86 68.6
Potri.002G021700 Populus trichocarpa HOM05D006392 ORTHO05D008010 4.1e-27 125.2 86 69.8
HPP92_024091 Vanilla planifolia HOM05D006392 ORTHO05D008010 4.1e-27 125.2 93 67.7
AL8G18870 Arabidopsis lyrata HOM05D006392 ORTHO05D008010 7.0e-27 124.4 95 66.3
A06p48320 Brassica napus HOM05D006392 ORTHO05D008010 7.0e-27 124.4 95 66.3
BraA06t27702Z Brassica rapa HOM05D006392 ORTHO05D008010 7.0e-27 124.4 95 66.3
CAN.G311.35 Capsicum annuum HOM05D006392 ORTHO05D008010 1.2e-26 123.6 93 66.7
PSO675G2043 Papaver somniferum HOM05D006392 ORTHO05D008010 1.2e-26 123.6 86 68.6
PGR083G2660 Punica granatum HOM05D006392 ORTHO05D008010 1.2e-26 123.6 86 70.9
Sopen04g035110 Solanum pennellii HOM05D006392 ORTHO05D008010 1.2e-26 123.6 93 67.7
PGSC0003DMG400009939 Solanum tuberosum HOM05D006392 ORTHO05D008010 1.2e-26 123.6 93 67.7
CARHR181930 Cardamine hirsuta HOM05D006392 ORTHO05D008010 1.6e-26 123.2 95 65.3
Peaxi162Scf00438g00835 Petunia axillaris HOM05D006392 ORTHO05D008010 1.6e-26 123.2 93 67.7
Solyc04g081500.3 Solanum lycopersicum HOM05D006392 ORTHO05D008010 1.6e-26 123.2 93 67.7
Aqoxy6G00284_Aqoxy6G00285 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 2.0e-26 122.9 86 67.4
DCAR_023015 Daucus carota HOM05D006392 ORTHO05D008010 2.0e-26 122.9 103 60.2
Migut.C00843 Erythranthe guttata HOM05D006392 ORTHO05D008010 2.0e-26 122.9 86 69.8
BcaC02g10765 Brassica carinata HOM05D006392 ORTHO05D008010 2.7e-26 122.5 95 65.3
C04p25370 Brassica napus HOM05D006392 ORTHO05D008010 2.7e-26 122.5 95 65.3
BolC4t24044H Brassica oleracea HOM05D006392 ORTHO05D008010 2.7e-26 122.5 95 65.3
Sabra05G0185500 Salix brachista HOM05D006392 ORTHO05D008010 2.7e-26 122.5 86 66.3
Nitab4.5_0013390g0010 Nicotiana tabacum HOM05D006392 ORTHO05D008010 3.5e-26 122.1 93 65.6
Potri.005G240000 Populus trichocarpa HOM05D006392 ORTHO05D008010 3.5e-26 122.1 86 66.3
BcaC06g31757 Brassica carinata HOM05D006392 ORTHO05D008010 4.5e-26 121.7 95 64.2
MELO3C030484.2 Cucumis melo HOM05D006392 ORTHO05D008010 7.7e-26 120.9 117 59.8
SGA_v2.0_scaffold11G05922 Striga asiatica HOM05D006392 ORTHO05D008010 1.0e-25 120.6 95 62.1
Sabra02G0018100 Salix brachista HOM05D006392 ORTHO05D008010 1.3e-25 120.2 86 66.3
Actinidia35835 Actinidia chinensis HOM05D006392 ORTHO05D008010 1.7e-25 119.8 95 63.2
Hund05186 Selenicereus undatus HOM05D006392 ORTHO05D008010 1.7e-25 119.8 86 67.4
CDE04G0374 Ceratophyllum demersum HOM05D006392 ORTHO05D008010 2.2e-25 119.4 85 68.2
Ciclev10001496m.g Citrus clementina HOM05D006392 ORTHO05D008010 2.9e-25 119.0 93 66.7
Sp7g07860 Schrenkiella parvula HOM05D006392 ORTHO05D008010 2.9e-25 119.0 95 62.1
Os06g0715600 Oryza sativa ssp. japonica HOM05D006392 ORTHO05D008010 5.0e-25 118.2 86 68.6
Thhalv10003229m.g Eutrema salsugineum HOM05D006392 ORTHO05D008010 1.5e-24 116.7 95 63.2
Zm00001eb228060 Zea mays HOM05D006392 ORTHO05D008010 3.6e-23 112.1 86 64.0
SEGI_16132 Sequoiadendron giganteum HOM05D006392 ORTHO05D008010 1.8e-22 109.8 131 48.1
Eucgr.F02661 Eucalyptus grandis HOM05D006392 ORTHO05D008010 4.4e-21 105.1 64 78.1
Atru.chr13.285 Acer truncatum HOM05D006392 ORTHO05D008010 1.3e-20 103.6 125 47.2
Dinv31849 Davidia involucrata HOM05D006392 ORTHO05D008010 1.3e-20 103.6 65 76.9
Manes.05G146900 Manihot esculenta HOM05D006392 ORTHO05D008010 1.7e-20 103.2 64 78.1
SMO196G0156 Selaginella moellendorffii HOM05D006392 ORTHO05D008010 1.2e-18 97.1 95 47.4
AagrBONN_evm.TU.Sc2ySwM_117.3435 Anthoceros agrestis HOM05D006392 ORTHO05D008010 5.9e-18 94.7 86 52.3
Pp3c4_9730 Physcomitrium patens HOM05D006392 ORTHO05D008010 2.5e-16 89.4 86 51.2
Mapoly0064s0103 Marchantia polymorpha HOM05D006392 ORTHO05D008010 7.2e-16 87.8 97 42.3
CBR_g23034 Chara braunii HOM05D006392 ORTHO05D008010 5.2e-14 81.6 95 44.2
COL.COLO4_26140 Corchorus olitorius HOM05D006392 ORTHO05D008010 3.4e-13 79.0 47 80.9
MBI05_g07507_MAGBIO Magnolia biondii HOM05D006392 ORTHO05D008010 1.8e-11 73.2 93 49.5
Aqoxy4G01015 Aquilegia oxysepala HOM05D006392 ORTHO05D008010 2.3e-09 66.2 47 63.8
unitig_32.g11136 Utricularia gibba HOM05D006392 ORTHO05D008010 1.9e-08 63.2 47 61.7


User provided reference genes

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