Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 1.8e-99 365.9 183 100.0
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 1.5e-74 283.1 164 87.8
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.7e-70 269.6 168 86.9
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.6e-69 264.6 164 82.3
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.5e-69 263.8 164 82.3
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 1.6e-68 263.1 164 82.3
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.1e-68 262.7 164 82.3
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.7e-68 261.5 164 81.7
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 4.9e-57 224.9 164 70.7
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 8.3e-57 224.2 164 68.3
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 8.9e-51 204.1 164 64.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.2e-50 203.8 164 61.6
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 1.3e-49 200.3 163 62.6
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 8.4e-49 197.6 166 62.7
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 8.4e-49 197.6 165 61.8
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.4e-48 196.8 164 59.1
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 4.1e-48 195.3 155 62.6
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 9.2e-48 194.1 165 59.4
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.2e-47 193.7 165 61.2
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.6e-47 193.4 164 59.1
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.1e-47 193.0 164 59.1
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 7.8e-47 191.0 164 59.1
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.7e-46 189.9 164 58.5
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 1.7e-46 189.9 164 59.8
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.7e-46 189.9 161 59.0
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.3e-46 189.5 164 60.4
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 1.9e-45 186.4 165 57.6
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.3e-45 185.7 164 58.5
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 5.6e-45 184.9 165 59.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 7.3e-45 184.5 164 59.8
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.1e-44 183.0 164 57.3
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 3.6e-44 182.2 146 63.0
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 1.4e-43 180.3 164 56.1
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.8e-43 179.9 164 58.5
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.8e-43 179.9 146 61.6
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 9.0e-43 177.6 165 56.4
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.5e-42 176.8 163 55.8
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 3.4e-42 175.6 156 59.0
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 7.6e-42 174.5 165 54.5
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 4.9e-41 171.8 164 53.0
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 6.4e-41 171.4 160 56.9
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 3.2e-40 169.1 162 54.9
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 3.2e-40 169.1 170 52.9
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 3.2e-40 169.1 164 52.4
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 5.4e-40 168.3 164 53.7
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 9.3e-40 167.5 164 52.4
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.2e-39 167.2 164 53.7
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 7.8e-39 164.5 164 54.3
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 7.8e-39 164.5 164 54.3
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 2.3e-38 162.9 168 53.6
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.0e-38 162.5 156 55.8
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 1.1e-37 160.6 164 53.0
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 9.6e-37 157.5 165 53.3
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 1.3e-36 157.1 164 50.0
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.6e-36 156.8 162 49.4
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 3.6e-36 155.6 155 52.9
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 3.6e-36 155.6 155 52.9
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 3.6e-36 155.6 155 52.9
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 3.6e-36 155.6 164 49.4
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 4.8e-36 155.2 164 53.0
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 6.2e-36 154.8 155 52.9
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 6.2e-36 154.8 155 52.9
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 6.2e-36 154.8 164 50.0
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 6.2e-36 154.8 165 48.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 8.1e-36 154.5 161 49.7
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 8.1e-36 154.5 164 52.4
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.4e-35 153.7 155 49.0
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 2.4e-35 152.9 164 48.8
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 2.4e-35 152.9 164 48.8
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 3.1e-35 152.5 160 51.2
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 3.1e-35 152.5 155 51.0
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 5.3e-35 151.8 155 51.0
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 5.3e-35 151.8 165 47.9
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 6.9e-35 151.4 176 47.7
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 6.9e-35 151.4 155 49.0
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 6.9e-35 151.4 165 49.1
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 1.2e-34 150.6 170 48.8
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 1.2e-34 150.6 170 48.8
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 1.2e-34 150.6 170 48.8
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 1.2e-34 150.6 164 47.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.5e-34 150.2 155 49.0
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 1.5e-34 150.2 167 48.5
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.0e-34 149.8 155 50.3
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.0e-34 149.8 165 50.9
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 2.6e-34 149.4 165 47.9
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.6e-34 149.4 165 48.5
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 2.6e-34 149.4 165 47.9
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 3.4e-34 149.1 165 49.1
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 4.5e-34 148.7 167 47.9
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 4.5e-34 148.7 155 49.0
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.8e-34 148.3 155 49.7
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 7.6e-34 147.9 165 47.9
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 7.6e-34 147.9 165 48.5
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 7.6e-34 147.9 165 49.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 9.9e-34 147.5 155 51.0
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 9.9e-34 147.5 155 51.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 9.9e-34 147.5 155 51.0
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 9.9e-34 147.5 165 46.7
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.3e-33 147.1 155 48.4
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 1.3e-33 147.1 99 73.7
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 2.9e-33 146.0 155 50.3
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 3.8e-33 145.6 155 50.3
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.8e-33 145.6 155 50.3
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.9e-33 145.2 155 48.4
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-32 142.9 155 50.3
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 4.2e-32 142.1 165 46.1
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.4e-32 141.7 161 49.7
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 7.1e-32 141.4 166 45.8
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 7.1e-32 141.4 164 48.8
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 9.3e-32 141.0 158 48.1
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.6e-31 140.2 156 46.2
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.6e-31 140.2 161 46.0
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 3.5e-31 139.0 163 44.8
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 6.0e-31 138.3 162 46.3
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 1.0e-30 137.5 162 45.7
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.0e-30 137.5 151 46.4
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.3e-30 137.1 164 43.3
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 1.3e-30 137.1 165 46.1
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.8e-30 136.7 158 48.7
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 3.0e-30 136.0 155 47.1
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 3.0e-30 136.0 162 45.7
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 6.7e-30 134.8 164 43.3
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.7e-30 134.8 165 42.4
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 1.9e-29 133.3 165 47.3
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 3.3e-29 132.5 166 45.2
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 7.4e-29 131.3 138 50.0
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.1e-28 129.8 164 40.9
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.8e-28 129.4 164 40.9
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.7e-28 129.0 113 61.1
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 4.8e-28 128.6 165 44.8
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.8e-28 128.6 128 52.3
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 6.2e-28 128.3 167 39.5
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 1.8e-27 126.7 162 43.2
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.0e-26 123.2 162 41.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 3.4e-26 122.5 174 40.8
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 8.4e-25 117.9 167 37.7
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.1e-24 117.5 155 37.4
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.2e-23 114.0 93 62.4
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 4.3e-21 105.5 166 36.7
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 6.2e-20 101.7 138 43.5
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 9.0e-19 97.8 138 41.3
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 6.5e-17 91.7 156 34.6
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.9e-16 90.1 90 51.1
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.9e-16 90.1 90 51.1
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 1.6e-15 87.0 165 32.1
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 2.7e-15 86.3 72 56.9
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 6.7e-14 81.6 78 57.7
Zm00001eb132370 Zea mays HOM05D004300 ORTHO05D005171 1.4e-08 63.9 99 32.3


User provided reference genes

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