Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 2.0e-33 145.2 74 100.0
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.2e-30 136.0 74 90.5
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.2e-30 136.0 74 90.5
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.6e-30 135.6 74 90.5
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.0e-30 133.7 74 87.8
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.3e-29 132.5 74 87.8
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.3e-29 132.5 74 86.5
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 7.3e-28 126.7 74 81.1
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 5.3e-26 120.6 74 77.0
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 9.0e-26 119.8 74 77.0
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 4.4e-25 117.5 74 78.4
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 5.8e-25 117.1 75 74.7
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 5.8e-25 117.1 74 74.3
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 7.6e-25 116.7 74 77.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 9.9e-25 116.3 74 78.4
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.3e-24 115.9 74 77.0
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.7e-24 115.5 74 75.7
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.9e-24 114.8 74 77.0
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 2.9e-24 114.8 74 77.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 3.8e-24 114.4 75 74.7
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 3.8e-24 114.4 75 74.7
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.8e-24 114.4 74 74.3
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 4.9e-24 114.0 74 75.7
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 6.4e-24 113.6 74 73.0
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 6.4e-24 113.6 74 74.3
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 6.4e-24 113.6 74 71.6
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 6.4e-24 113.6 74 74.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.9e-23 112.1 74 74.3
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 2.4e-23 111.7 74 71.6
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 2.4e-23 111.7 74 71.6
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 2.4e-23 111.7 75 70.7
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 4.2e-23 110.9 74 74.3
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 9.3e-23 109.8 73 71.2
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 1.2e-22 109.4 74 70.3
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 2.1e-22 108.6 75 69.3
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.7e-22 108.2 74 70.3
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 4.6e-22 107.5 74 68.9
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 4.6e-22 107.5 74 70.3
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 4.6e-22 107.5 74 70.3
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 6.0e-22 107.1 73 68.5
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 7.8e-22 106.7 75 74.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.0e-21 106.3 73 68.5
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 1.3e-21 105.9 74 70.3
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 2.3e-21 105.1 74 67.6
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.3e-21 105.1 73 68.5
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.0e-21 104.8 74 70.3
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 5.1e-21 104.0 74 70.3
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 6.6e-21 103.6 75 73.3
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.9e-20 102.1 72 68.1
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.5e-20 101.7 74 70.3
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 3.3e-20 101.3 74 67.6
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 4.3e-20 100.9 72 69.4
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 5.6e-20 100.5 74 68.9
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 5.6e-20 100.5 79 68.4
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.3e-20 100.1 78 62.8
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 9.6e-20 99.8 75 68.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 9.6e-20 99.8 78 62.8
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.3e-19 99.4 78 61.5
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.3e-19 99.4 78 61.5
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 2.8e-19 98.2 74 66.2
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 3.6e-19 97.8 78 69.2
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 3.6e-19 97.8 78 61.5
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 3.6e-19 97.8 78 61.5
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.8e-19 97.4 61 72.1
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.8e-19 97.4 75 66.7
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 6.2e-19 97.1 77 67.5
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 6.2e-19 97.1 75 65.3
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 6.2e-19 97.1 79 65.8
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 8.1e-19 96.7 78 61.5
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 1.1e-18 96.3 73 63.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.8e-18 95.5 77 64.9
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 1.8e-18 95.5 74 63.5
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 2.4e-18 95.1 64 67.2
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.1e-18 94.7 71 67.6
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 4.0e-18 94.4 75 64.0
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 5.3e-18 94.0 78 57.7
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.3e-18 94.0 79 58.2
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 5.3e-18 94.0 79 58.2
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 5.3e-18 94.0 75 62.7
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 6.9e-18 93.6 72 58.3
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 9.0e-18 93.2 79 60.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 9.0e-18 93.2 79 58.2
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 9.0e-18 93.2 75 62.7
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-17 92.4 69 69.6
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-17 92.4 69 69.6
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-17 92.4 69 69.6
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 1.5e-17 92.4 69 69.6
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 1.5e-17 92.4 69 69.6
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.5e-17 92.4 72 62.5
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.0e-17 92.0 69 68.1
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-17 91.7 69 68.1
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.6e-17 91.7 80 62.5
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.5e-17 90.9 78 62.8
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 5.8e-17 90.5 69 68.1
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 5.8e-17 90.5 78 61.5
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 5.8e-17 90.5 72 61.1
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 7.6e-17 90.1 59 72.9
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 7.6e-17 90.1 80 61.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 9.9e-17 89.7 80 57.5
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 9.9e-17 89.7 62 67.7
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 1.3e-16 89.4 69 69.6
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 1.3e-16 89.4 69 69.6
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.3e-16 89.4 81 60.5
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.3e-16 89.4 76 64.5
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-16 88.6 70 61.4
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 2.9e-16 88.2 69 68.1
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.8e-16 87.8 81 61.7
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 8.4e-16 86.7 64 67.2
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 8.4e-16 86.7 73 58.9
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.4e-15 85.9 77 58.4
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.4e-15 85.9 80 57.5
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-15 85.5 75 61.3
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.9e-15 85.5 54 68.5
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 2.4e-15 85.1 57 70.2
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 4.2e-15 84.3 47 83.0
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 5.4e-15 84.0 74 59.5
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 9.3e-15 83.2 78 60.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 9.3e-15 83.2 45 82.2
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.2e-14 82.8 73 61.6
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.2e-14 82.8 66 63.6
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.2e-14 82.8 80 53.8
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 1.2e-14 82.8 56 66.1
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.7e-14 81.6 80 56.2
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.7e-14 81.6 45 80.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 6.0e-14 80.5 73 58.9
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 7.9e-14 80.1 68 54.4
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.0e-13 79.7 44 79.5
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.0e-13 79.7 77 57.1
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 1.3e-13 79.3 64 54.7
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 1.8e-13 79.0 66 54.5
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.3e-13 78.6 60 63.3
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.3e-13 78.6 60 63.3
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.3e-13 78.6 75 52.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-13 77.4 74 54.1
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-13 77.4 74 54.1
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-13 77.4 74 54.1
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 5.1e-13 77.4 74 54.1
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 5.1e-13 77.4 74 54.1
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 6.7e-13 77.0 74 52.7
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 6.7e-13 77.0 74 51.4
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 8.7e-13 76.6 74 54.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 8.7e-13 76.6 47 68.1
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 3.3e-12 74.7 53 62.3
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 4.3e-12 74.3 53 58.5
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 5.6e-12 73.9 59 61.0
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 5.6e-12 73.9 73 53.4
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 2.1e-11 72.0 55 60.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 4.8e-11 70.9 51 54.9
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.8e-11 70.9 46 65.2
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 8.1e-11 70.1 57 63.2
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 7.6e-09 63.5 35 77.1


User provided reference genes

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