Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 7.4e-68 260.4 129 100.0
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 3.5e-49 198.4 128 75.0
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 2.5e-47 192.2 128 72.7
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 2.5e-47 192.2 128 74.2
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 4.0e-45 184.9 128 69.5
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 2.7e-41 172.2 128 64.8
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.5e-39 165.6 123 65.0
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 5.5e-39 164.5 116 67.2
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.2e-39 164.1 121 64.5
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 4.7e-38 161.4 128 60.9
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-37 159.5 121 62.8
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.8e-36 153.7 127 60.6
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 7.7e-33 144.1 117 57.3
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.5e-31 137.1 103 66.0
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-30 136.7 103 66.0
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.6e-30 135.2 99 61.6
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 6.1e-30 134.4 103 64.1
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 3.0e-29 132.1 128 50.0
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 4.0e-29 131.7 128 50.8
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 1.2e-28 130.2 94 68.1
FAN11G0642 Fragaria x ananassa HOM05D000355 ORTHO05D000227 1.5e-28 129.8 88 64.8
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 3.4e-28 128.6 107 57.9
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 7.5e-28 127.5 94 61.7
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-27 126.7 127 50.4
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 2.8e-27 125.6 119 52.1
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 4.9e-27 124.8 128 52.3
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 1.1e-26 123.6 127 49.6
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-26 123.6 119 51.3
FvH4_5g04911 Fragaria vesca HOM05D000003 ORTHO05D006737 2.4e-26 122.5 83 66.3
FvH4_5g01660 Fragaria vesca HOM05D000003 ORTHO05D006737 5.4e-26 121.3 118 55.9
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 5.4e-26 121.3 120 54.2
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.0e-26 120.9 106 56.6
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 9.2e-26 120.6 123 50.4
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-25 119.4 121 52.1
FAN18G0759 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-25 119.4 81 66.7
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.9e-25 117.9 120 50.0
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 7.8e-25 117.5 119 52.1
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 1.0e-24 117.1 113 53.1
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 2.9e-24 115.5 102 51.0
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.0e-24 114.8 108 52.8
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 1.6e-22 109.8 103 54.4
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 2.8e-22 109.0 110 46.4
FAN03G1976 Fragaria x ananassa HOM05D006382 ORTHO05D008938 3.6e-22 108.6 68 73.5
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 4.7e-22 108.2 70 71.4
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 4.7e-22 108.2 128 44.5
RcHm_v2.0_Chr6g0286611 Rosa chinensis HOM05D000003 ORTHO05D006737 4.7e-22 108.2 68 72.1
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 4.7e-22 108.2 114 43.9
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 8.0e-22 107.5 128 45.3
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 3.0e-21 105.5 104 51.0
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 5.2e-21 104.8 128 43.8
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 8.9e-21 104.0 127 45.7
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 1.2e-20 103.6 128 42.2
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 7.5e-20 100.9 123 43.1
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 9.8e-20 100.5 107 47.7
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 9.8e-20 100.5 128 43.0
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.9e-19 99.0 106 44.3
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.9e-19 99.0 101 48.5
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 4.9e-19 98.2 115 45.2
FAN19G2165 Fragaria x ananassa HOM05D007821 ORTHO05D009897 5.4e-18 94.7 72 62.5
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-17 93.6 96 45.8
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.7e-17 92.4 97 47.4
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 3.5e-17 92.0 101 46.5
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 4.6e-17 91.7 92 48.9
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 5.9e-17 91.3 121 41.3
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-16 89.7 114 38.6
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-16 89.7 81 56.8
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 3.0e-16 89.0 107 43.0
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.9e-16 88.6 93 48.4
RcHm_v2.0_Chr1g0348191 Rosa chinensis HOM05D000003 ORTHO05D006737 6.6e-16 87.8 82 48.8
RcHm_v2.0_Chr5g0004021 Rosa chinensis HOM05D000003 ORTHO05D006737 6.6e-16 87.8 73 61.6
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-15 86.3 82 52.4
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 3.3e-15 85.5 91 47.3
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-15 85.5 93 45.2
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-15 85.5 93 45.2
FvH4_3g30681 Fragaria vesca HOM05D000003 ORTHO05D000006 2.1e-14 82.8 128 38.3
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 6.2e-14 81.3 88 46.6
RcHm_v2.0_Chr6g0260491 Rosa chinensis HOM05D000003 ORTHO05D006737 8.0e-14 80.9 83 47.0
FvH4_4g12942 Fragaria vesca HOM05D001338 ORTHO05D001239 1.1e-13 80.5 51 70.6
FAN19G0368 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-13 80.5 80 46.2
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-13 80.1 102 45.1
FvH4_5g01582 Fragaria vesca HOM05D000003 ORTHO05D006737 1.8e-13 79.7 59 64.4
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 5.2e-13 78.2 61 60.7
FAN08G0755 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.4e-12 75.5 63 55.6
FAN09G3474 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.4e-12 75.1 81 43.2
FAN22G0118 Fragaria x ananassa HOM05D001283 ORTHO05D001109 7.5e-12 74.3 86 41.9
FvH4_4g01552 Fragaria vesca HOM05D000003 ORTHO05D006737 6.4e-11 71.2 77 42.9
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 1.4e-10 70.1 74 45.9
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 4.1e-10 68.6 85 42.4
FAN05G1347 Fragaria x ananassa HOM05D015760 ORTHO05D020672 4.1e-10 68.6 67 44.8
FAN03G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.4e-10 68.2 76 43.4
FAN04G0671 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.4e-10 68.2 70 44.3
FAN16G3138 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.4e-10 68.2 74 43.2
FAN01G1551 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-09 66.6 75 44.0
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 6.0e-09 64.7 118 34.7
Ah.04g154180 Amaranthus hybridus HOM05D000003 ORTHO05D006737 7.8e-09 64.3 128 32.8
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 7.8e-09 64.3 116 31.0
Duzib132G0669 Durio zibethinus HOM05D000003 ORTHO05D000167 7.8e-09 64.3 128 29.7
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 1.7e-08 63.2 127 29.1
FvH4_3g26222 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-08 63.2 92 40.2
FAN07G0587 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.6e-08 61.2 68 41.2
FvH4_4g08194 Fragaria vesca HOM05D000003 ORTHO05D000004 8.6e-08 60.8 47 57.4
FAN04G2364 Fragaria x ananassa HOM05D030836 ORTHO05D035801 8.6e-08 60.8 39 74.4
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 1.5e-07 60.1 118 28.0
QL02p009216 Quercus lobata HOM05D000003 ORTHO05D000167 1.9e-07 59.7 123 30.1
Sed0025910 Sechium edule HOM05D000003 ORTHO05D000167 1.9e-07 59.7 118 31.4
Duzib170G1141 Durio zibethinus HOM05D000003 ORTHO05D000167 2.5e-07 59.3 118 29.7
FvH4_4g16971 Fragaria vesca HOM05D000003 ORTHO05D000004 2.5e-07 59.3 69 42.0
TWI36G1323 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 2.5e-07 59.3 118 33.9
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-07 58.9 84 33.3
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.3e-07 58.9 130 30.0
FAN26G2731 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-07 58.9 60 50.0
CANSAT01G2509 Cannabis sativa HOM05D000003 ORTHO05D000004 5.6e-07 58.2 127 28.3
FAN08G2392 Fragaria x ananassa HOM05D000003 ORTHO05D006737 5.6e-07 58.2 71 49.3
FAN06G1488 Fragaria x ananassa HOM05D003102 ORTHO05D006737 7.3e-07 57.8 38 68.4
FAN02G2776 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.5e-07 57.4 80 40.0
QL07p036969 Quercus lobata HOM05D000003 ORTHO05D000167 9.5e-07 57.4 96 34.4
Atru.chr4.2041 Acer truncatum HOM05D000003 ORTHO05D000167 1.2e-06 57.0 118 30.5
FAN12G0644 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-06 57.0 44 68.2
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.2e-06 57.0 95 33.7
QL05p005727 Quercus lobata HOM05D000432 ORTHO05D000320 1.2e-06 57.0 89 37.1
QL08p050440 Quercus lobata HOM05D000003 ORTHO05D000167 1.2e-06 57.0 125 25.6
Dinv03486 Davidia involucrata HOM05D014767 ORTHO05D016862 1.6e-06 56.6 128 30.5
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 1.6e-06 56.6 127 26.0
FAN12G1814 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-06 56.6 66 48.5
PSO339G5584 Papaver somniferum HOM05D007919 ORTHO05D006738 2.1e-06 56.2 95 38.9
FAN11G2439 Fragaria x ananassa HOM05D046867 ORTHO05D045776 2.8e-06 55.8 57 45.6
Atru.chr13.1818 Acer truncatum HOM05D000003 ORTHO05D000004 3.6e-06 55.5 126 28.6
FvH4_3g34330 Fragaria vesca HOM05D046867 ORTHO05D045776 3.6e-06 55.5 57 45.6
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 4.7e-06 55.1 127 29.9
QL12p007586 Quercus lobata HOM05D000003 ORTHO05D000167 4.7e-06 55.1 128 25.8
FAN05G1674 Fragaria x ananassa HOM05D038108 ORTHO05D006737 6.2e-06 54.7 64 43.8
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 6.2e-06 54.7 127 28.3
Atru.chr11.887 Acer truncatum HOM05D000003 ORTHO05D000167 8.1e-06 54.3 118 30.5
Atru.chr2.2049 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-06 54.3 110 31.8
QL07p013392 Quercus lobata HOM05D000003 ORTHO05D000167 8.1e-06 54.3 90 30.0


User provided reference genes

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